SEARCH

SEARCH BY CITATION

References

  • Bennasar, A., R. Rosselló-Mora, J. Lalucat, E. R. Moore. 1996. 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. Int. J. Syst. Bacteriol. 46:200205.
  • Carlson, C. A., L. S. Pierson, J. J. Rosen, and J. L. Ingraham. 1983. Pseudomonas stutzeri and related species undergo natural transformation. J. Bacteriol. 153:9399.
  • Chauhan, S., P. Barbieri, and T. K. Wood. 1998. Oxidation of trichloroethylene, 1,1-dichloroethylene, and chloroform by toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1. Appl. Environ. Microbiol. 64:30233024.
  • Cladera, A. M., A. Bennasar, M. Barceló, J. Lalucat, and E. García-Valdés. 2004. Comparative genetic diversity of Pseudomonas stutzeri genomovars, Clonal structure, and phylogeny of the species. J. Bacteriol. 186:52395248.
  • Coates, J. D., U. Michaelidou, R. A. Bruce, S. M. O'Connor, J. N. Crespi, and L. A. Achenbach. 1999. Ubiquity and diversity of dissimilatory (per) chlorate-reducing bacteria. Appl. Environ. Microbiol. 65:52345241.
  • Criddle, C. S., J. T. DeWitt, D. Grbic-Galic, and P. L. McCarty. 1990. Transformation of carbon tetrachloride by Pseudomonas sp. strain KC under denitrification conditions. Appl. Environ. Microbiol. 56:32403246.
  • Dahle, H., F. Garshol, M. Madsen, and N. K. Birkeland. 2008. Microbial community structure analysis of produced water from a high-temperature North Sea oil-field. Antonie Van Leeuwenhoek 93:3749.
  • Finkel, S. E., and R. Kolter. 1999. Evolution of microbial diversity during prolonged starvation. Proc. Natl. Acad. Sci. USA 96:40234027.
  • Fisher, J. B. 1987. Distribution and occurrence of aliphatic acid anions in deep subsurface waters. Geochim. Cosmochim. Acta 51:24592468.
  • García-Valdés, E., M. Mulet, and J. Lalucat. 2010. Insights into the life styles of Pseudomonas stutzeri. Pp. 177198 in J. L. Ramos and A. Filloux, eds. Pseudomonas. Volume 6, molecular microbiology, infection and biodiversity. Vol. 6, Springer Press, New York, NY.
  • Ginard, M., J. Lalucat, B. Tummler, and U. Romling. 1997. Genome organization of Pseudomonas stutzeri and resulting taxonomic and evolutionary considerations. Int. J. Syst. Bacteriol. 47:132143.
  • Holmes, B. 1986. Identification and distribution of Pseudomonas stutzeri in clinical material. J. Appl. Bacteriol. 60:401411.
  • Keeler, S. J., R. D. Fallon, E. R. Hendrickson, L. L. Hnatow, S. C. Jackson, and M. P. Perry. 2013. Identification, characterization, and application of Pseudomonas stutzeri (LH4:15), using in microbially enhanced oil release. US Patent 8,357,526
  • Kilbane, J. J. II, C. M. S. Ribeiro, and M. M. Linbares. 2003. Bacterial cleavage of only organic C-N bonds of carbonaceous materials to reduce nitrogen content. US patent 6,541,240.
  • Kobayashi, H., K. Endo, S. Sakata, D. Mayumi, H. Kawaguchi, M. Ikarashi, et al. 2012. Phylogenetic diversity of microbial communities associated with the crude-oil, large-insoluble-particle and formation-water components of the reservoir fluid from a non-flooded high-temperature petroleum reservoir. J. Biosci. Bioeng. 113:204210.
  • Lalucat, J., A. Bennasar, R. Bosch, E. García-Valdés, and N. J. Palleroni. 2006. Biology of Pseudomonas stutzeri. Microbiol. Mol. Biol. Rev. 70:510547.
  • Li, H., S. Z. Yang, B. Z. Mu, Z. F. Rong, and J. Zhang. 2007. Molecular phylogenetic diversity of the microbial community associated with a high-temperature petroleum reservoir at an offshore oilfield. FEMS Microbiol. Ecol. 60:7484.
  • Li, D., D. J. Midgley, J. P. Ross, Y. Oytam, G. C. Abell, H. Volk, et al. 2012. Microbial biodiversity in a Malaysian oil field and systematic comparison with oil reservoirs worldwide. Arch. Microbiol. 194:513523.
  • Magot, M. 2005. Indigenous microbial communities in oil fields. Pp. 2134 in B. Ollivier and M. Magot, eds. Petroleum microbiology. ASM, Washington, DC.
  • Magot, M., B. Ollivier, and B. K. C. Patel. 2000. Microbiology of petroleum reservoirs. Antonie Van Leeuwenhoek 77:103116.
  • Mulet, M., J. Lalucat, and E. García-Valdés. 2010. DNA sequence-based analysis of the Pseudomonas species. Environ. Microbiol. 12:15131530.
  • Mulet, M., Z. David, B. Nogales, R. Bosch, J. Lalucat, and E. García-Valdés. 2011. Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after the Prestige oil spill. Appl. Environ. Microbiol. 77:10761085.
  • Nunoura, T., H. Oida, N. Masui, F. Inagaki, K. Takai, S. Hirano, et al. 2006. Culture-dependent and independent analyses of subsurface microbial communities in oil-bearing strata of Sagara oil reservoir. Island. Arc. 15:328337.
  • Oliver, A., R. Canton, P. Campo, F. Baquero, and J. Blazquez. 2000. High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. Science 288:12511254.
  • Orphan, V. J., L. T. Taylor, D. Hafenbradl, and E. F. Delong. 2000. Culture-dependent and culture-independent characterization of microbial assemblages associated with high temperature petroleum reservoirs. Appl. Environ. Microbiol. 66:700711.
  • Palys, T., L. K. Nakamura, and F. M. Cohan. 1997. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47:11451156.
  • Papadopoulos, D., D. Schneider, J. Meier-Eiss, W. Arber, R. E. Lenski, and M. Blot. 1999. Genomic evolution during a 10,000-generation experiment with bacteria. Proc. Natl. Acad. Sci. USA 96:38073812.
  • Papapetropoulou, M., J. Iliopoulou, G. Rodopoulou, J. Detorakis, and O. Paniara. 1994. Occurrence and antibiotic-resistance of Pseudomonas species isolated from drinking water in southern Greece. J. Chemother. 6:111116.
  • Pham, V. D., L. L. Hoatow, S. Zhang, R. D. Fallon, S. C. Jackson, J.-F. Tomb, et al. 2009. Charactering microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods. Environ. Microbiol. 1:172187.
  • Radman, M. 1999. Enzymes of evolutionary change. Nature 401:866867.
  • Ren, H. Y., X. J. Zhang, Z. Y. Song, W. Rupert, G. J. Gao, S. X. Guo, et al. 2011. Comparison of microbial community compositions of injection and production well samples in a long-term water-flooded petroleum reservoir. PLoS One 6:e23258.
  • Rius, N., M. C. Fusté, C. Guasp, J. Lalucat, and J. G. Lorén. 2001. Clonal population structure of Pseudomonas stutzeri, a species with exceptional genetic diversity. J. Bacteriol. 183:736744.
  • Rosselló, R. A., E. García-Valdés, J. Lalucat, and J. Ursing. 1991. Genotypic and phenotypic diversity of Pseudomonas stutzeri. System. Appl. Microbiol. 14:150157.
  • Scotta, C., M. Mulet, D. Sánchez, M. Gomila, A. Ramírez, A. Bennasar, et al. 2012. Identification and genomovar assignation of clinical strains of Pseudomonas stutzeri. Eur. J. Clin. Microbiol. Infect. Dis. 31:21332139.
  • Scotta, C., M. Gomila, M. Mulet, J. Lalucat, and E. García-Valdés. 2013. Whole-cell MALDI-TOF mass spectrometry and multilocus sequence analysis in the discrimination of Pseudomonas stutzeri populations: three novel genomovars. Ecol. Microb.. doi: 10.1007/s00248-013-0246-8
  • Sikorski, J., M. Möhle, and W. Wackernagel. 2002a. Identification of complex composition, strong strain diversity and directional selection in local Pseudomonas stutzeri populations from marine sediment and soils. Environ. Microbiol. 4:465476.
  • Sikorski, J., N. Teschner, and W. Wackernagel. 2002b. Highly different levels of natural transformation are associated with genomic subgroups within a local population of Pseudomonas stutzeri from soil. Appl. Environ. Microbiol. 68:865873.
  • Sikorski, J., J. Lalucat, and W. Wackernagel. 2005. Genomovars 11 to 18 of Pseudomonas stutzeri, identified among isolates from soil and marine sediment. Int. J. Syst. Bacteriol. 55:17671770.
  • Silva, T. R., L. C. L. Verde, E. V. Santos Neto, and V. M. Oliveira. 2013. Diversity analyses of microbial communities in petroleum samples from Brazilian oil fields. Int. Biodeterior. Biodegradation 81:5170.
  • Singleton, D. R., M. A. Furlong, S. L. Rathbun, and W. B. Whitman. 2001. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67:43744376.
  • Tang, Y. Q., Y. Li, J. Y. Zhao, C. Q. Chi, L. X. Huang, H. P. Dong, et al. 2012. Microbial communities in long-term, water-flooded petroleum reservoirs with different in situ temperatures in the Huabei oilfield, China. PLoS One 3:e33535.
  • Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S ribosomal-RNA sequences reveal uncultured inhabitants of a well-studied thermal community. FEMS Microbiol. Rev. 75:105115.
  • Yamamoto, S., H. Kasai, D. L. Arnold, R. W. Jackson, A. Vivian, and S. Harayama. 2000. Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146:23852394.
  • Yamane, K., H. Maki, T. Nakayma, T. Nakajima, N. Nomura, H. Uchiyama, et al. 2008. Diversity and similarity of microbial communities in petroleum crude oils produced in Asia. Biosci. Biotechnol. Biochem. 72:28312839.
  • Youssef, N., M. S. Elshahed, and M. J. McInerney. 2009. Microbial process in oil field: culprits, problems, and opportunities. Adv. Appl. Microbiol. 66:141251.
  • Zhang, F., Y. H. She, S. S. Ma, J. M. Hu, I. M. Banat, and D. J. Hou. 2010. Response of microbial community structure to microbial plugging in a mesothermic petroleum reservoir in China. Appl. Microbiol. Biotechnol. 88:14131422.
  • Zhang, F., Y. H. She, L. J. Chai, I. M. Banat, X. T. Zhang, F. C. Shu, et al. 2012. Microbial diversity in long-term water flooded oil reservoirs with different in situ temperatures in Chian. Sci. Rep. 2:760.
  • Zhao, L., T. Ma, M. Gao, P. Gao, M. Cao, X. Zhu, et al. 2012. Characterization of microbial diversity and community in water flooding oil reservoirs in China. World. J. Microbial. Biotechnol. 28:30393052.