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  • Baltar, F., J. Aristegui, J. M. Gasol, and G. J. Herndl. 2012. Microbial functioning and community structure variability in the mesopelagic and epipelagic waters of the subtropical northeast atlantic ocean. Appl. Environ. Microbiol. 78:33093316.
  • Blenkinsopp, S. A., and M. A. Lock. 1994. The impact of storm flow on river biofilm architecture. J. Phycol. 30:807818.
  • Borsheim, K. Y., and G. Bratbak. 1987. Cell-volume to cell carbon conversion factors for a Bacterivorous monas sp enriched from seawater. Mar. Ecol. Prog. Ser. 36:171175.
  • Bouvier, T., and C. F. Maurice. 2011. A Single-Cell Analysis of Virioplankton Adsorption, Infection, and Intracellular Abundance in Different Bacterioplankton Physiologic Categories. Microbial Ecol. 62:669678.
  • Brancelj, A., and H. J. Dumont. 2007. A review of the diversity, adaptations and groundwater colonization pathways in Cladocera and Calanoida (Crustacea), two rare and contrasting groups of stygobionts. Fundam. Appl. Limnol. 168:317.
  • Brussaard, C. P. D. 2004. Optimization of procedures for counting viruses by flow cytometry. Appl. Environ. Microbiol. 70:15061513.
  • Brussaard, C. P. D., S. W. Wilhelm, F. Thingstad, M. G. Weinbauer, G. Bratbak, M. Heldal, et al. 2008. Global-scale processes with a nanoscale drive: the role of marine viruses. ISME J. 2:575578.
  • Chen, F., J. R. Lu, B. J. Binder, Y. C. Liu, and R. E. Hodson. 2001. Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR gold. Appl. Environ. Microbiol. 67:539545.
  • Cho, J. C., and S. J. Kim. 2000. Increase in bacterial community diversity in subsurface aquifers receiving livestock wastewater input. Appl. Environ. Microbiol. 66:956965.
  • D'Amore, F., G. Scandiffio, and C. Panichi. 1983. Some observations on the chemical classification of ground water. Geothermics 12:141148.
  • Deng, L., A. Gregory, S. Yilmaz, B. T. Poulos, P. Hugenholtz, and M. B. Sullivan. 2012. Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging. MBio. 3:e0037312.
  • Drew, D., and H. Hötzl. 1999. Karst hydrogeology and human activities: impacts, consequences and implications. Vol. 20. IAH International Contributions to Hydrogeology, Brookfield, VT.
  • Farnleitner, A. H., G. Ryzinska-Paier, G. H. Reischer, M. M. Burtscher, S. Knetsch, S. Rudnicki, et al. 2010. Escherichia coli and enterococci are sensitive and reliable indicators for human, livestock, and wild life faecal pollution in alpine mountainous water resources. J. Appl. Microbiol. 109:15991608.
  • Farnleitner, A. H., I. Wilhartitz, A. K. T. Kirschner, H. Stadler, M. M. Burtscher, R. Hornek, et al. 2005. Bacterial dynamics in spring water of alpine karst aquifers indicates the presence of stable autochthonous microbial endokarst communities. Environ. Microbiol. 7:12481259.
  • Fischer, U. R., A. K. T. Kirschner, and B. Velimirov. 2005. Optimization of extraction and estimation of viruses in silty freshwater sediments. Aquat. Microb. Ecol. 40:207216.
  • Ford, D. C., and P. W. Williams. 1996. Karst geomorphology and hydrology. Chapman and Hall, London.
  • Ford, D. C., and P. W. Williams. 2007. Karst geomorphology and hydrology. Chapman and Hall, London.
  • Galassi, D. M. P., F. Stoch, B. Fiasca, T. Di Lorenzo, and E. Gattone. 2009. Groundwater biodiversity patterns in the Lessinian Massif of northern Italy. Freshw. Biol. 54:830847.
  • Gasol, J. M. 1994. A framework for the assessment of top-down vs bottom-up control of heterotrophic nanoflagellate abundance. Mar. Ecol. Prog. Ser. 113:291300.
  • Gasol, J. M., C. Pedrós-Alió, and D. Vaqué. 2002. Regulation of bacterial assemblages in oligotrophic plancton systems: results from experimental and empirical approaches. Antonie Van Leeuwenhoek 81:435452.
  • Gibert, J., and D. C. Culver. 2009. Assessing and conserving groundwater biodiversity: an introduction. Freshw. Biol. 54:639648.
  • Gibert, J., D. C. Culver, M. J. Dole-Olivier, F. Malard, M. C. Christman, and L. Deharveng. 2009. Assessing and conserving groundwater biodiversity: synthesis and perspectives. Freshw. Biol. 54:930941.
  • Goddard, V. J., A. C. Baker, J. E. Davy, D. G. Adams, M. M. De Ville, S. J. Thackeray, et al. 2005. Temporal distribution of viruses, bacteria and phytoplankton throughout the water column in a freshwater hypereutrophic lake. Aquat. Microb. Ecol. 39:211223.
  • Gordon, C., and S. Toze. 2003. Influence of groundwater characteristics on the survival of enteric viruses. J. Appl. Microbiol. 95:536544.
  • Hobbie, J. E., R. J. Daley, and S. Jasper. 1977. Use of nucleopore filters for counting bacteria by fluorescence microscopy. Appl. Environ. Microbiol. 33:12251228.
  • Husman, A. M. D. R., W. J. Lodder, S. A. Rutjes, J. F. Schijven, and P. F. M. Teunis. 2009. Long-term inactivation study of three enteroviruses in artificial surface and groundwaters, using PCR and cell culture. Appl. Environ. Microbiol. 75:10501057.
  • John, D. E., and J. B. Rose. 2005. Review of factors affecting microbial survival in groundwater. Environ. Sci. Technol. 39:73457356.
  • Kjelleberg, S. 1993. Starvation in bacteria. Plenum Press, New York, NY.
  • Lehman, R. M., F. S. Colwell, and G. A. Bala. 2001a. Attached and unattached microbial communities in a simulated basalt aquifer under fracture- and porous-flow conditions. Appl. Environ. Microbiol. 67:27992809.
  • Lehman, R. M., F. F. Roberto, D. Earley, D. F. Bruhn, S. E. Brink, S. P. O'connell, et al. 2001b. Attached and unattached bacterial communities in a 120-meter corehole in an acidic, crystalline rock aquifer. Appl. Environ. Microbiol. 67:20952106.
  • Lucena, F., F. Ribas, A. E. Duran, S. Skraber, C. Gantzer, C. Campos, et al. 2006. Occurrence of bacterial indicators and bacteriophages infecting enteric bacteria in groundwater in different geographical areas. J. Appl. Microbiol. 101:96102.
  • Marie, D., C. P. D. Brussaard, R. Thyrhaug, G. Bratbak, and D. Vaulot. 1999. Enumeration of marine viruses in culture and natural samples by flow cytometry. Appl. Environ. Microbiol. 65:4552.
  • Morita, R.Y. 1997. Bacteria in oligotrophic environments. Chapman and Hall, London, U.K.
  • Noble, R. T. 2001. Enumeration of viruses. Method Microbiol. 30:4350.
  • Novarino, G., A. Warren, H. Butler, G. Lambourne, A. Boxshall, J. Bateman, et al. 1997. Protistan communities in aquifers: a review. FEMS Microbiol. Rev. 20:261275.
  • Pronk, M., N. Goldscheider, and J. Zopfi. 2006. Dynamics and interaction of organic carbon, turbidity and bacteria in a karst aquifer system. Hydrogeol. J. 14:473484.
  • Pronk, M., N. Goldscheider, and J. Zopfi. 2009a. Microbial communities in karst groundwater and their potential use for biomonitoring. Hydrogeol. J. 17:3748.
  • Pronk, M., N. Goldscheider, J. Zopfi, and F. Zwahlen. 2009b. Percolation and particle transport in the unsaturated zone of a karst aquifer. Ground Water 47:361369.
  • Reischer, G., D. Kasper, R. Steinborn, R. Mach, and A. Farnleitner. 2006. Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions. Appl. Environ. Microbiol. 72:56105614.
  • Reischer, G., D. C. Kasper, R. Steinborn, A. H. Farnleitner, and R. L. Mach. 2007. A quantitative real-time PCR assay for the highly sensitive and specific detection of human feacal influence in spring water from a large alpine catchment area. Lett. Appl. Microbiol. 44:351356.
  • Rouch, R. 1977. Karst as an ecosystem. Comptes Rendus Hebdomadaires Des Seances De L Academie Des Sciences Serie D 284:11011103.
  • Roudnew, B., T. J. Lavery, J. R. Seymour, R. J. Smith, and J. G. Mitchell. 2013. Spatially varying complexity of bacteria and virus-like particle communities within an aquifer system. Aquat. Microb. Ecol. 68:259266.
  • Säwström, C., M. A. Anesio, W. Granéli, and J. Laybourn-Parry. 2006. Seasonal viral loop dynamics in two large ultraoligotrophic antarctic freshwater lakes. Microb. Ecol. 53:111.
  • Sherr, B. F., E. B. Sherr, and J. Mcdaniel. 1992. Effect of protistan grazing on the frequency of dividing cells in bacterioplankton assemblages. Appl. Environ. Microbiol. 58:23812385.
  • Sibbald, M. J., and L. J. Albright. 1988. Aggregated and free bacteria as food sources for heterotrophic microflagellates. Appl. Environ. Microbiol. 54:613616.
  • Simek, K., J. Armengol, M. Comerma, J. C. Garcia, P. Kojecka, J. Nedoma, et al. 2001. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microb. Ecol. 42:359371.
  • Simon, K. S., J. Ginert, P. Petitot, and R. Laurent. 2001. Spatial and temporal patterns of bacterial densitiy and metabolic activity in karst. Arch. Hydrobiol. 151:6782.
  • Stadler, H., and E. Strobl. 1997. Karstwasserdynamik Zeller Staritzen (in German). Endbericht Joanneum für MA31 Stadt Wien, 171.
  • Stadler, H., Strobl , and E . 1998. Karstwasserdynamik und Karstwasserschutz Hochschwab STA 28K/96 (in German). Endbericht 2. Arbeitsjahr im Auftrag MA31 Stadt Wien.
  • Starink, M., I. N. Krylova, M. J. Bargilissen, R. P. M. Bak, and T. E. Cappenberg. 1994. Rates of benthic protozoan grazing on free and attached sediment bacteria measured with fluorescently stained sediment. Appl. Environ. Microbiol. 60:22592264.
  • Suttle, C. A. 2005. Viruses in the sea. Nature 437:356361.
  • Suttle, C. A. 2007. Marine viruses-major players in the global ecosystem. Nat. Rev. 5:801812.
  • Vazquez-Dominguez, E., J. M. Gasol, S. Agusti, C. M. Duarte, and D. Vaque. 2005. Growth and grazing losses of prokaryotes in the central Atlantic Ocean. J. Plankton Res. 27:10551066.
  • Vazquez-Dominguez, E., C. M. Duarte, S. Agusti, K. Jurgens, D. Vaque, and J. M. Gasol. 2008. Microbial plankton abundance and heterotrophic activity across the Central Atlantic Ocean. Prog. Oceanogr. 79:8394.
  • Weinbauer, M. G., and F. Rassoulzadegan. 2004. Are viruses driving microbial diversification and diversity? Environ. Microbiol. 6:111.
  • Weinbauer, M. G., I. Brettar, and M. G. Hofle. 2003. Lysogeny and virus-induced mortality of bacterioplankton in surface, deep, and anoxic marine waters. Limnol. Oceanogr. 48:14571465.
  • Wieltschnig, C., A. K. T. Kirschner, A. Steitz, and B. Velimirov. 2001. Weak coupling between heterotrophic nanoflagellates and bacteria ina eutrophic freshwater environment. Microb. Ecol. 42:159167.
  • Wieltschnig, C., U. R. Fischer, A. K. T. Kirschner, and B. Velimirov. 2003. Benthic bacterial production and protozoan predation in a silty freshwater environment. Microb. Ecol. 46:6272.
  • Wilhartitz, I. C., A. K. T. Kirschner, H. Stadler, G. J. Herndl, R. L. Mach, and A. H. Farnleitner. 2009. Heterotrophic prokaryotic production in ultra-oligotrophic alpine karst aquifers and ecological implications. FEMS Microbiol. Ecol. 68:287299.
  • Wilhelm, S. W., and C. A. Suttle. 1999. Viruses and nutrient cycles in the sea. Bioscience 49:781788.
  • Williamson, S. J., L. A. Houchin, L. Mcdaniel, and J. H. Paul. 2002. Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida. Appl. Environ. Microbiol. 68:43074314.
  • Wommack, K. E., and R. R. Colwell. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:69114.