Review Article
A framework based on spin glass models for the inference of anatomical connectivity from diffusion-weighted MR data – a technical review
Article first published online: 5 DEC 2002
DOI: 10.1002/nbm.780
Copyright © 2002 John Wiley & Sons, Ltd.
Issue
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NMR in Biomedicine
Special Issue: Diffusion tensor imaging and axonal mapping - state of the art
Volume 15, Issue 7-8, pages 481–492, November - December 2002
Additional Information
How to Cite
Mangin, J.-F., Poupon, C., Cointepas, Y., Rivière, D., Papadopoulos-Orfanos, D., Clark, C. A., Régis, J. and Le Bihan, D. (2002), A framework based on spin glass models for the inference of anatomical connectivity from diffusion-weighted MR data – a technical review. NMR Biomed., 15: 481–492. doi: 10.1002/nbm.780
Publication History
- Issue published online: 5 DEC 2002
- Article first published online: 5 DEC 2002
- Manuscript Accepted: 29 JAN 2002
- Manuscript Revised: 7 JAN 2002
- Manuscript Received: 17 MAY 2001
- Abstract
- Article
- References
- Cited By
Keywords:
- diffusion;
- connectivity;
- white matter;
- fiber;
- regularization;
- inverse problem;
- spin glass
Abstract
A family of methods aiming at the reconstruction of a putative fascicle map from any diffusion-weighted dataset is proposed. This fascicle map is defined as a trade-off between local information on voxel microstructure provided by diffusion data and a priori information on the low curvature of plausible fascicles. The optimal fascicle map is the minimum energy configuration of a simulated spin glass in which each spin represents a fascicle piece. This spin glass is embedded into a simulated magnetic external field that tends to align the spins along the more probable fiber orientations according to diffusion models. A model of spin interactions related to the curvature of the underlying fascicles introduces a low bending potential constraint. Hence, the optimal configuration is a trade-off between these two kind of forces acting on the spins. Experimental results are presented for the simplest spin glass model made up of compass needles located in the center of each voxel of a tensor based acquisition. Copyright © 2002 John Wiley & Sons, Ltd.
REFERENCES
- 1. Tracking neural pathways with MRI. Trends Neurosci. 1999; 22(9): 373–374.
- 2, , . The Analysis of Cortical Connectivity. Neuroscience Intelligence Unit. Springer: Berlin, 1995.
- 3, , , , , , . Diffusion tensor imaging: concepts and applications. J. Magn. Reson. Imag. 2001; 13: 534–546.Direct Link:
- 4, , . Nuclear magnetic resonance measurements of skeletal muscle. anisotropy of the diffusion coefficient of the intracellular water. Biophys. J. 1976; 16: 1043–1053.
- 5, , . Diffusion-weighted MR imaging of anisotropic water diffusion in cat central nervous system. Radiology 1990; 176: 439–446.
- 6, , . Anisotropic diffusion within human white matter: demonstration with NMR techniques in vivo. Radiology 1990; 177: 401–405.
- 7, , , , , . Echo-planar imaging of intravoxel incoherent motions. Radiology 1990; 177: 407–414.
- 8, , . MR diffusion tensor spectroscopy and imaging. Biophys. J. 1994; 66: 259–267.
- 9, , , . High angular resolution diffusion imaging of the human brain. In VIIth ISMRM, Philadelphia, USA, 1999.
- 10, . Orientational diffusion reflects fiber structure within a voxel. In ISMRM-ESMRMB, Glasgow, 2001; 1528.
- 11. Characterization of anisotropy in high angular resolution diffusion weighted MRI. In ISMRM-ESMRMB, Glasgow, 2001; 1531.
- 12, , , , . Measuring corticocortical connectivity matrices with diffusion spectrum imaging. In ISMRM-ESMRMB, Glasgow, 2001; 502.
- 13, , , . Three dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 1999; 45: 265–269.Direct Link:
- 14, , , , , , , , . Tracking neuronal fiber pathways in the living human brain. Proc. Natl Acad. Sci. USA 1999; 96: 10422–10427.
- 15, , , , . In vivo fiber tractography using DT-MRI data. Magn. Reson. Med. 2000; 44(4): 625–632.Direct Link:
- 16, . An algorithm for tracking fluid particles in numerical simulations of homogeneous turbulence. J. Comput. Phys. 1988; 79: 373–416.
- 17, , , , . Validation of DT-MRI tractography in the descending motor pathways of human subjects. In ISMRM-ESMRMB, Glasgow, 2001; 501.
- 18, , , , , . Image processing for diffusion tensor magnetic resonance imaging. In MICCAI'99, Cambridge, UK, LNCS-1679. Springer: Berlin, 1999; 441–452.
- 19, , . A regularization scheme for diffusion tensor magnetic resonance images. In XVIIth IPMI, NCS-2082. Springer: Berlin, 2001; 92–105.
- 20, . Diffusion tensor regularization with constraints preservation. In CVPR., Hawai, 2001.
- 21, , , , , , , . Regularization of MR diffusion tensor maps for tracking brain white matter bundles. In MICCAI'98, MIT, LNCS-1496. Springer: Berlin, 1998; 489–498.
- 22, , , , , , . Regularization of diffusion-based direction maps for the tracking of brain white matter fascicles. NeuroImage 2000; 12: 184–195.
- 23, , . Tensorlines: advection-diffusion based propagation through diffusion tensor fields. In IEEE Visualization. IEEE: New York, 1999; 249.
- 24, . Error analysis of white matter tracking algorithms (streamlines and tensorlines) for DT-MRI. In ISMRM-ESMRMB, Glasgow, 2001; 506.
- 25, , . An investigation of functional and anatomical connectivity using diffusion tensor imaging. In ISMRM-ESMRMB, Glasgow, 2001; 1509.
- 26, , . Solving the diffusion equation for fiber tracking in the living human brain. In ISMRM-ESMRMB, Glasgow, 2001; 1529.
- 27, , . Distributed anatomical brain connectivity derived from diffusion tensor imaging. In XVIIth IPMI, LNCS-2082. Springer: Berlin, 2001; 106–120.
- 28, , , . Study of connectivity in the brain using the full diffusion tensor from MRI. In XVIIth IPMI, LNCS-2082. Springer: Berlin, 2001; 121–133.
- 29, , , , . Detection of linear features in SAR images: application to the road network extraction. IEEE Geosci. Remote Sens. 1998; 36(2): 434–453.
- 30, . Toward a quantitative assessment of diffusion anisotropy. Magn. Reson. Mag. 1996; 36: 893–906.
- 31, , , , . From 3D magnetic resonance images to structural representations of the cortex topography using topology preserving deformations. J. Math. Imag. Vision 1995; 5(4): 297–318.
- 32, . Multiresolution elastic matching. Comput. Vision Graph. Image Process. 1989; 46: 1–21.
- 33, , , . Mathematical textbook of deformable neuroanatomies. Proc. Natl Acad. Sci. USA 1993; 90(24): 11944–11948.
- 34, . Scale-space and edge detection using anisotropic diffusion. IEEE Trans. Pattern Anal. Mach. Intell. 1990; 12(7): 629–639.
- 35, . Stochastic relaxation. Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell. 1984; 6(6): 721–741.
- 36, , . Fiber crossing in human brain depicted with diffusion tensor MR imaging. Radiology 2000; 217(3): 897–903.
- 37, , . The human brain: dissections of the real brain. Virtual Hospital, University of Iowa; www.vh.org/Providers/Textbooks/BrainAnatomy, 1997.
- 38, , , , , , . Towards inference of human brain connectivity from MR diffusion tensor data. Med. Image Anal. 2001; 5: 1–15.
- 39, , , , . Diffusion tensor MR imaging of the human brain. Radiology 1996; 201: 637–648.
- 40, , , , . Eddy-current distortion correction and robust tensor estimation for MR diffusion imaging. In MICCAI'01, Utrecht, LNCS. Springer: Berlin, 2001; 186–194.
- 41, . Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J. Magn. Reson. 1996; 111: 209–219.
- 42, , , , , . Automatic recognition of cortical sulci using a congregation of neural networks. In MICCAI, Pittsburgh, LNCS 1935. Springer: Berlin, 2000; 40–49.
- 43, , , . New images from human visual cortex. Trends Neurosci. 1996; 19: 481–489.
- 44, , . Atlas of the Cerebral Sulci. Thieme: Germany, 1990.
- 45, , , , , , , , . Study of cortical folding process with prenatal MR imaging. In ISMRM-ESMRMB, Glasgow. 2001; 121.
- 46, , , , , . Generic model for the localization of the cerebral cortex and preoperative multimodal integration in epilepsy surgery. Stereotact. Funct. Neurosurg. 1995; 65: 72–80.
- 47. A tension-based theory of morphogenesis and compact wiring in the central nervous system. Nature 1997; 385: 313–318.
- DSI
diffusion spectrum imaging
- DTI
diffusion tensor imaging

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