Review Article

You have free access to this content

A framework based on spin glass models for the inference of anatomical connectivity from diffusion-weighted MR data – a technical review

  1. J.-F. Mangin1,*,
  2. C. Poupon1,
  3. Y. Cointepas1,
  4. D. Rivière1,
  5. D. Papadopoulos-Orfanos1,
  6. C. A. Clark1,
  7. J. Régis2,
  8. D. Le Bihan1

Article first published online: 5 DEC 2002

DOI: 10.1002/nbm.780

Issue

NMR in Biomedicine

NMR in Biomedicine

Special Issue: Diffusion tensor imaging and axonal mapping - state of the art

Volume 15, Issue 7-8, pages 481–492, November - December 2002

Additional Information

How to Cite

Mangin, J.-F., Poupon, C., Cointepas, Y., Rivière, D., Papadopoulos-Orfanos, D., Clark, C. A., Régis, J. and Le Bihan, D. (2002), A framework based on spin glass models for the inference of anatomical connectivity from diffusion-weighted MR data – a technical review. NMR Biomed., 15: 481–492. doi: 10.1002/nbm.780

Author Information

  1. 1

    Service Hospitalier Frédéric Joliot, CEA, Orsay, France

  2. 2

    Service de Neurochirurgie Fonctionnelle et Stéréotaxique, CHU La Timone, France

*Service Hospitalier Frédéric Joliot CEA, 4 place du Général Leclerc, 91401 Orsay Cedex, France

Publication History

  1. Issue published online: 5 DEC 2002
  2. Article first published online: 5 DEC 2002
  3. Manuscript Accepted: 29 JAN 2002
  4. Manuscript Revised: 7 JAN 2002
  5. Manuscript Received: 17 MAY 2001

SEARCH

SEARCH BY CITATION

ARTICLE TOOLS

View Full Article (HTML) Get PDF (397K)

REFERENCES

  • 1
    Rye DB. Tracking neural pathways with MRI. Trends Neurosci. 1999; 22(9): 373–374.
  • 2
    Young MP, Scannell JW, Burns G. The Analysis of Cortical Connectivity. Neuroscience Intelligence Unit. Springer: Berlin, 1995.
  • 3
    Le Bihan D, Mangin J-F, Poupon C, Clark CA, Pappata S, Molko N, Chabriat H. Diffusion tensor imaging: concepts and applications. J. Magn. Reson. Imag. 2001; 13: 534–546.
    Direct Link:
  • 4
    Cleveland GG, Chang DC, Hazelwood CF. Nuclear magnetic resonance measurements of skeletal muscle. anisotropy of the diffusion coefficient of the intracellular water. Biophys. J. 1976; 16: 1043–1053.
  • 5
    Moseley ME, Cohen Y, Kucharczyk J. Diffusion-weighted MR imaging of anisotropic water diffusion in cat central nervous system. Radiology 1990; 176: 439–446.
  • 6
    Chenevert TL, Brunberg JA, Pipe JG. Anisotropic diffusion within human white matter: demonstration with NMR techniques in vivo. Radiology 1990; 177: 401–405.
  • 7
    Turner R, Le Bihan D, Maier J, Vavrek R, Hedges LK, Pekar J. Echo-planar imaging of intravoxel incoherent motions. Radiology 1990; 177: 407–414.
  • 8
    Basser PJ, Mattiello J, LeBihan D. MR diffusion tensor spectroscopy and imaging. Biophys. J. 1994; 66: 259–267.
  • 9
    Tuch DS, Weisskoff RM, Belliveau JW, Wedeen VJ. High angular resolution diffusion imaging of the human brain. In VIIth ISMRM, Philadelphia, USA, 1999.
  • 10
    Von dem Hagen E, Henkelman RM. Orientational diffusion reflects fiber structure within a voxel. In ISMRM-ESMRMB, Glasgow, 2001; 1528.
  • 11
    Frank L. Characterization of anisotropy in high angular resolution diffusion weighted MRI. In ISMRM-ESMRMB, Glasgow, 2001; 1531.
  • 12
    Tuch DS, Wiegell MR, Reese TG, Belliveau JW, Van Wedeen J. Measuring corticocortical connectivity matrices with diffusion spectrum imaging. In ISMRM-ESMRMB, Glasgow, 2001; 502.
  • 13
    Mori S, Crain BJ, Chacko VP, Van Zijl PCM. Three dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 1999; 45: 265–269.
    Direct Link:
  • 14
    Conturo TE, Lori NF, Cull TS, Akbudak E, Snyder AZ, Shimony JS, McKinstry RC, Burton H, Raichle ME. Tracking neuronal fiber pathways in the living human brain. Proc. Natl Acad. Sci. USA 1999; 96: 10422–10427.
  • 15
    Basser PJ, Pajevic S, Pierpaoli C, Duda J, Aldroubi A. In vivo fiber tractography using DT-MRI data. Magn. Reson. Med. 2000; 44(4): 625–632.
    Direct Link:
  • 16
    Yeung P, Pope S. An algorithm for tracking fluid particles in numerical simulations of homogeneous turbulence. J. Comput. Phys. 1988; 79: 373–416.
  • 17
    Pierpaoli C, Barnett AS, Pajevic S, Virta A, Basser PJ. Validation of DT-MRI tractography in the descending motor pathways of human subjects. In ISMRM-ESMRMB, Glasgow, 2001; 501.
  • 18
    Westin C-F, Maier SE, Khidir B, Everett P, Jolesz FA, Kikinis R. Image processing for diffusion tensor magnetic resonance imaging. In MICCAI'99, Cambridge, UK, LNCS-1679. Springer: Berlin, 1999; 441–452.
  • 19
    Coulon O, Alexander DC, Arridge SR. A regularization scheme for diffusion tensor magnetic resonance images. In XVIIth IPMI, NCS-2082. Springer: Berlin, 2001; 92–105.
  • 20
    Tschumperle D, Deriche R. Diffusion tensor regularization with constraints preservation. In CVPR., Hawai, 2001.
  • 21
    Poupon C, Mangin J-F, Frouin V, Régis J, Poupon F, Pachot-Clouard M, Le Bihan D, Bloch I. Regularization of MR diffusion tensor maps for tracking brain white matter bundles. In MICCAI'98, MIT, LNCS-1496. Springer: Berlin, 1998; 489–498.
  • 22
    Poupon C, Clark CA, Frouin V, Régis J, Bloch I, Le Bihan D, Mangin J-F. Regularization of diffusion-based direction maps for the tracking of brain white matter fascicles. NeuroImage 2000; 12: 184–195.
  • 23
    Weinstein D, Kindlmann G, Lundberg E. Tensorlines: advection-diffusion based propagation through diffusion tensor fields. In IEEE Visualization. IEEE: New York, 1999; 249.
  • 24
    Lazar M, Alexander A. Error analysis of white matter tracking algorithms (streamlines and tensorlines) for DT-MRI. In ISMRM-ESMRMB, Glasgow, 2001; 506.
  • 25
    Koch M, Norris DG, Hund-Georgiadis M. An investigation of functional and anatomical connectivity using diffusion tensor imaging. In ISMRM-ESMRMB, Glasgow, 2001; 1509.
  • 26
    Gembris D, Schumacher H, Suter D. Solving the diffusion equation for fiber tracking in the living human brain. In ISMRM-ESMRMB, Glasgow, 2001; 1529.
  • 27
    Parker GJM, Wheeler-Kingssbott CA, Barker GJ. Distributed anatomical brain connectivity derived from diffusion tensor imaging. In XVIIth IPMI, LNCS-2082. Springer: Berlin, 2001; 106–120.
  • 28
    Batchelor PG, Hill DLG, Calamante F, Atkinson D. Study of connectivity in the brain using the full diffusion tensor from MRI. In XVIIth IPMI, LNCS-2082. Springer: Berlin, 2001; 121–133.
  • 29
    Tupin F, Maitre H, Mangin J-F, Nicholas J-M, Pechersky E. Detection of linear features in SAR images: application to the road network extraction. IEEE Geosci. Remote Sens. 1998; 36(2): 434–453.
  • 30
    Pierpaoli C, Basser PJ. Toward a quantitative assessment of diffusion anisotropy. Magn. Reson. Mag. 1996; 36: 893–906.
  • 31
    Mangin J-F, Frouin V, Bloch I, Regis J, Lopez-Krahe J. From 3D magnetic resonance images to structural representations of the cortex topography using topology preserving deformations. J. Math. Imag. Vision 1995; 5(4): 297–318.
  • 32
    Bajcsy R, Kovacic R. Multiresolution elastic matching. Comput. Vision Graph. Image Process. 1989; 46: 1–21.
  • 33
    Miller MI, Christensen GE, amit Y, Grenander U. Mathematical textbook of deformable neuroanatomies. Proc. Natl Acad. Sci. USA 1993; 90(24): 11944–11948.
  • 34
    Perona P, Malik J. Scale-space and edge detection using anisotropic diffusion. IEEE Trans. Pattern Anal. Mach. Intell. 1990; 12(7): 629–639.
  • 35
    Geman S, Geman D. Stochastic relaxation. Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell. 1984; 6(6): 721–741.
  • 36
    Wiegell MR, Larsson HB, Wedeen VJ. Fiber crossing in human brain depicted with diffusion tensor MR imaging. Radiology 2000; 217(3): 897–903.
  • 37
    Williams TH, Gluhbegovic N, Jew JY. The human brain: dissections of the real brain. Virtual Hospital, University of Iowa; www.vh.org/Providers/Textbooks/BrainAnatomy, 1997.
  • 38
    Poupon C, Mangin J-F, Clark CA, Frouin V, Régis J, Le Bihan D, Bloch I. Towards inference of human brain connectivity from MR diffusion tensor data. Med. Image Anal. 2001; 5: 1–15.
  • 39
    Pierpaoli C, Jezzard P, Basser PJ, Barnett A, Di Chiro G. Diffusion tensor MR imaging of the human brain. Radiology 1996; 201: 637–648.
  • 40
    Mangin J-F, Poupon C, Clark C, Le Bihan D, Bloch I. Eddy-current distortion correction and robust tensor estimation for MR diffusion imaging. In MICCAI'01, Utrecht, LNCS. Springer: Berlin, 2001; 186–194.
  • 41
    Basser PJ, Pierpaoli C. Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J. Magn. Reson. 1996; 111: 209–219.
  • 42
    Rivière D, Mangin J-F, Papadopoulos D, Martinez J-M, Frouin V, Régis J. Automatic recognition of cortical sulci using a congregation of neural networks. In MICCAI, Pittsburgh, LNCS 1935. Springer: Berlin, 2000; 40–49.
  • 43
    Tootel R, Dale A, Sereno M, Malach R. New images from human visual cortex. Trends Neurosci. 1996; 19: 481–489.
  • 44
    Ono M, Kubik S, Abernathey CD. Atlas of the Cerebral Sulci. Thieme: Germany, 1990.
  • 45
    Cachia A, Mangin J-F, Boddaert N, Régis J, Kherif F, Sonigo P, Zilbovicius M, Bloch I, Brunelle F. Study of cortical folding process with prenatal MR imaging. In ISMRM-ESMRMB, Glasgow. 2001; 121.
  • 46
    Régis J, Mangin J-F, Frouin V, Sastre F, Peragut JC, Samson Y. Generic model for the localization of the cerebral cortex and preoperative multimodal integration in epilepsy surgery. Stereotact. Funct. Neurosurg. 1995; 65: 72–80.
  • 47
    Van Essen DC. A tension-based theory of morphogenesis and compact wiring in the central nervous system. Nature 1997; 385: 313–318.
View Full Article (HTML) Get PDF (397K)