Report

Common interchange standards for proteomics data: Public availability of tools and schema. Report on the Proteomic Standards Initiative Workshop, 2nd Annual HUPO Congress, Montreal, Canada, 8–11th October 2003

  1. Sandra Orchard1,*,
  2. Henning Hermjakob1,
  3. Randall K. Julian Jr.2,
  4. Kai Runte1,
  5. David Sherman3,
  6. Jérôme Wojcik4,
  7. Weimin Zhu1,
  8. Rolf Apweiler1

Article first published online: 13 JAN 2004

DOI: 10.1002/pmic.200300694

Issue

PROTEOMICS

PROTEOMICS

Special Issue: Proteomics at Cordoba Proceedings of the Proteomics Seminars, Cordoba, Spain 5-7 February 2003

Volume 4, Issue 2, pages 490–491, February 2004

Additional Information

How to Cite

Orchard, S., Hermjakob, H., Julian, R. K., Runte, K., Sherman, D., Wojcik, J., Zhu, W. and Apweiler, R. (2004), Common interchange standards for proteomics data: Public availability of tools and schema. Report on the Proteomic Standards Initiative Workshop, 2nd Annual HUPO Congress, Montreal, Canada, 8–11th October 2003. Proteomics, 4: 490–491. doi: 10.1002/pmic.200300694

Author Information

  1. 1

    EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

  2. 2

    Lilly Research Laboratories, Indianapolis, IN, USA

  3. 3

    University of Bordeaux, Bordeaux,France

  4. 4

    Hybrigenics Paris, Paris, France

*EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK Fax: +44-1223-494-468

Publication History

  1. Issue published online: 29 JAN 2004
  2. Article first published online: 13 JAN 2004
  3. Manuscript Received: 21 NOV 2003

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Keywords:

  • Human Proteome Organization;
  • Protein Standards Initiative

Abstract

The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics and to facilitate data comparision, exchange and verification. To this end, a Level 1 Molecular Interaction XML data exchange format has been developed which has been accepted for publication and is freely available at the PSI website (http.//psidev.sf.net/). Several major protein interaction databases are already making data available in this format. A draft XML interchange format for mass spectrometry data has been written and is currently undergoing evaluation whilst work is ongoing to develop a proteomics data integration model, MIAPE.

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