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Figure S1. Peptide length distributions of mouse reference protein database and experimental dataset.

Figure S2. Number distributions of in silico digested peptide of mouse RefSeq database which are suitable for identification and quantification.

Figure S3. Overlap of the suitable detected peptides for identification (A) and quantification (B) in three digest methods.

Figure S4. Overlaps of qualitatively and quantitatively identified peptides and proteins between repeat experiments of three bands of each protease dataset.

Figure S5. Distributions of peptide and protein abundance.

Table S1. The numbers of peptide and protein identification in combined LysC-Trypsin dataset.

pmic7472-sup-0002-suppmat.docx29Ksupplementary material

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