PROTEOMICS

Cover image for Vol. 11 Issue 6

Special Issue: Quality Control in Proteomics

No. 6 March 2011

Volume 11, Issue 6

Pages 1013–1211

Issue edited by: Lennart Martens, Juan Antonio Vizcaíno, Roz Banks

  1. Cover Picture

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Cover Picture: Proteomics 6'11

      Version of Record online: 4 MAR 2011 | DOI: 10.1002/pmic.201190021

  2. In this issue

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. In this issue

      Version of Record online: 4 MAR 2011 | DOI: 10.1002/pmic.201190023

  3. Contents

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Contents – Proteomics 6'2011

      Version of Record online: 4 MAR 2011 | DOI: 10.1002/pmic.201190024

  4. Editorial Board

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Editorial Board: Proteomics

      Version of Record online: 4 MAR 2011 | DOI: 10.1002/pmic.201190022

  5. From Our Sister Journal

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. From Our Sister Journal (page 1013)

      Version of Record online: 4 MAR 2011 | DOI: 10.1002/pmic.201190019

  6. Editorial

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
  7. Viewpoints

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Challenges for proteomics core facilities (pages 1017–1025)

      Kathryn S. Lilley, Michael J. Deery and Laurent Gatto

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000693

    2. Quality control in LC-MS/MS (pages 1026–1030)

      Thomas Köcher, Peter Pichler, Remco Swart and Karl Mechtler

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000578

    3. Quality meets quantity – quality control, data standards and repositories (pages 1031–1036)

      Martin Eisenacher, Anke Schnabel and Christian Stephan

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000441

  8. Review

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
  9. Research Article

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Quality control of nano-LC-MS systems using stable isotope-coded peptides (pages 1049–1057)

      Julia Maria Burkhart, Thomas Premsler and Albert Sickmann

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000604

  10. Technical Brief

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
  11. Research Articles

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. COMPASS: A suite of pre- and post-search proteomics software tools for OMSSA (pages 1064–1074)

      Craig D. Wenger, Douglas H. Phanstiel, M. Violet Lee, Derek J. Bailey and Joshua J. Coon

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000616

  12. Standardisation & Guidelines

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
  13. Rapid Communication

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. A stringent approach to improve the quality of nitrotyrosine peptide identifications (pages 1094–1098)

      Bart Ghesquière, Kenny Helsens, Joël Vandekerckhove and Kris Gevaert

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000526

  14. Research Article

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides (pages 1099–1109)

      Florian Beck, Urs Lewandrowski, Matthias Wiltfang, Ingo Feldmann, Jörg Geiger, Albert Sickmann and René Peiman Zahedi

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000562

  15. Rapid Communication

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. A comparison of MS2-based label-free quantitative proteomic techniques with regards to accuracy and precision (pages 1110–1113)

      Niklaas Colaert, Joël Vandekerckhove, Kris Gevaert and Lennart Martens

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000521

  16. Research Articles

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Generic workflow for quality assessment of quantitative label-free LC-MS analysis (pages 1114–1124)

      Marianne Sandin, Morten Krogh, Karin Hansson and Fredrik Levander

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000493

    2. iTRAQ protein quantification: A quality-controlled workflow (pages 1125–1134)

      Julia M. Burkhart, Marc Vaudel, René P. Zahedi, Lennart Martens and Albert Sickmann

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000711

  17. Standardisation and Guidelines

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Systematic quantification of peptides/proteins in urine using selected reaction monitoring (pages 1135–1147)

      Nathalie Selevsek, Mariette Matondo, Marta Sanchez Carbayo, Ruedi Aebersold and Bruno Domon

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000599

  18. Technical Briefs

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Evaluation of absolute peptide quantitation strategies using selected reaction monitoring (pages 1148–1152)

      James Campbell, Taha Rezai, Amol Prakash, Bryan Krastins, Loïc Dayon, Malcolm Ward, Sarah Robinson and Mary Lopez

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000511

    2. Mass spectrometry-based immuno-precipitation proteomics – The user's guide (pages 1153–1159)

      Sara ten Have, Séverine Boulon, Yasmeen Ahmad and Angus I. Lamond

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000548

  19. Research Articles

    1. Top of page
    2. Cover Picture
    3. In this issue
    4. Contents
    5. Editorial Board
    6. From Our Sister Journal
    7. Editorial
    8. Viewpoints
    9. Review
    10. Research Article
    11. Technical Brief
    12. Research Articles
    13. Standardisation & Guidelines
    14. Rapid Communication
    15. Research Article
    16. Rapid Communication
    17. Research Articles
    18. Standardisation and Guidelines
    19. Technical Briefs
    20. Research Articles
    1. Toward a standardized urine proteome analysis methodology (pages 1160–1171)

      Magali Court, Nathalie Selevsek, Mariette Matondo, Yves Allory, Jerome Garin, Christophe D. Masselon and Bruno Domon

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000566

    2. A reproducibility-based evaluation procedure for quantifying the differences between MS/MS peak intensity normalization methods (pages 1172–1180)

      Sven Degroeve, Niklaas Colaert, Joël Vandekerckhove, Kris Gevaert and Lennart Martens

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000605

    3. A global analysis of peptide fragmentation variability (pages 1181–1188)

      Harald Barsnes, Ingvar Eidhammer and Lennart Martens

      Version of Record online: 16 FEB 2011 | DOI: 10.1002/pmic.201000640

    4. Simulating and validating proteomics data and search results (pages 1189–1211)

      Scott J. Geromanos, Chris Hughes, Dan Golick, Steven Ciavarini, Marc V. Gorenstein, Keith Richardson, John B. Hoyes, Johannes P.C. Vissers and James I. Langridge

      Version of Record online: 7 FEB 2011 | DOI: 10.1002/pmic.201000576

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