PROTEOMICS

Cover image for Vol. 12 Issue 8

April 2012

Volume 12, Issue 8

Pages 1073–1300

  1. Cover Picture

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. You have free access to this content
      Cover Picture: Proteomics 8'12

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201270031

  2. Editorial Board

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. Editorial Board: Proteomics

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201270032

  3. In This Issue

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. In This Issue

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201270033

  4. Contents

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. You have free access to this content
      Contents - Proteomics 8'12

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201270034

  5. Editorial

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. You have free access to this content
      Targeted Proteomics (page 1073)

      Christine Carapito and Ruedi Aebersold

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201270035

  6. Instrumentation and Measurement Technology

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics (pages 1074–1092)

      Tujin Shi, Dian Su, Tao Liu, Keqi Tang, David G. Camp II, Wei-Jun Qian and Richard D. Smith

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100436

    2. Using iRT, a normalized retention time for more targeted measurement of peptides (pages 1111–1121)

      Claudia Escher, Lukas Reiter, Brendan MacLean, Reto Ossola, Franz Herzog, John Chilton, Michael J. MacCoss and Oliver Rinner

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100463

    3. Highly multiplexed targeted proteomics using precise control of peptide retention time (pages 1122–1133)

      Sebastien Gallien, Scott Peterman, Reiko Kiyonami, Jamal Souady, Elodie Duriez, Alan Schoen and Bruno Domon

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100533

  7. Assay Generation and Interference Problems

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. The development of selected reaction monitoring methods for targeted proteomics via empirical refinement (pages 1134–1141)

      Michael S. Bereman, Brendan MacLean, Daniela M. Tomazela, Daniel C. Liebler and Michael J. MacCoss

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201200042

  8. Data Resources and Analysis

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. Chromatographic retention time prediction for posttranslationally modified peptides (pages 1151–1159)

      Luminita Moruz, An Staes, Joseph M. Foster, Maria Hatzou, Evy Timmerman, Lennart Martens and Lukas Käll

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100386

    2. PASSEL: The PeptideAtlas SRMexperiment library (pages 1170–1175)

      Terry Farrah, Eric W. Deutsch, Richard Kreisberg, Zhi Sun, David S. Campbell, Luis Mendoza, Ulrike Kusebauch, Mi-Youn Brusniak, Ruth Hüttenhain, Ralph Schiess, Nathalie Selevsek, Ruedi Aebersold and Robert L. Moritz

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100515

    3. An assessment of current bioinformatic solutions for analyzing LC-MS data acquired by selected reaction monitoring technology (pages 1176–1184)

      Mi-Youn K. Brusniak, Caroline S. Chu, Ulrike Kusebauch, Mark J. Sartain, Julian D. Watts and Robert L. Moritz

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100571

  9. Quantification

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. Mass spectrometry-based absolute protein quantification: PSAQ™ strategy makes use of “noncanonical” proteotypic peptides (pages 1217–1221)

      Michel Jaquinod, Mathieu Trauchessec, Céline Huillet, Mathilde Louwagie, Dorothée Lebert, Guillaume Picard, Annie Adrait, Alain Dupuis, Jérôme Garin, Virginie Brun and Christophe Bruley

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100538

  10. Biological Applications in the Biomarker Field

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma (pages 1222–1243)

      Dominik Domanski, Andrew J. Percy, Juncong Yang, Andrew G. Chambers, John S. Hill, Gabriela V. Cohen Freue and Christoph H. Borchers

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100568

    2. SRM targeted proteomics in search for biomarkers of HCV-induced progression of fibrosis to cirrhosis in HALT-C patients (pages 1244–1252)

      Shizhen Qin, Yong Zhou, Anna S. Lok, Alex Tsodikov, Xiaowei Yan, Li Gray, Min Yuan, Robert L. Moritz, David Galas, Gilbert S. Omenn and Leroy Hood

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100601

    3. Multiplexed quantification of estrogen receptor and HER2/Neu in tissue and cell lysates by peptide immunoaffinity enrichment mass spectrometry (pages 1253–1260)

      Regine M. Schoenherr, Jeffrey R. Whiteaker, Lei Zhao, Richard G. Ivey, Mary Trute, Jacob Kennedy, Uliana J. Voytovich, Ping Yan, Chenwei Lin and Amanda G. Paulovich

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100587

  11. Technical Applications

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations
    1. Targeted proteomics for quantification of histone acetylation in Alzheimer's disease (pages 1261–1268)

      Kangling Zhang, Matthew Schrag, Andrew Crofton, Rishi Trivedi, Harry Vinters and Wolff Kirsch

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201200010

    2. Comparative characterization of the glycosylation profiles of an influenza hemagglutinin produced in plant and insect hosts (pages 1269–1288)

      Sheng Zhang, Robert W. Sherwood, Yong Yang, Tara Fish, Wei Chen, James A. McCardle, R. Mark Jones, Vidadi Yusibov, Eliel Ruiz May, Jocelyn K.C. Rose and Theodore. W. Thannhauser

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100474

    3. Application of targeted proteomics to metabolically engineered Escherichia coli (pages 1289–1299)

      Pragya Singh, Tanveer S. Batth, Darmawi Juminaga, Robert H. Dahl, Jay D. Keasling, Paul D. Adams and Christopher J. Petzold

      Article first published online: 11 MAY 2012 | DOI: 10.1002/pmic.201100482

  12. Standard Abbreviations

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In This Issue
    5. Contents
    6. Editorial
    7. Instrumentation and Measurement Technology
    8. Assay Generation and Interference Problems
    9. Data Resources and Analysis
    10. Quantification
    11. Biological Applications in the Biomarker Field
    12. Technical Applications
    13. Standard Abbreviations

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