PROTEOMICS - Clinical Applications

© WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

Cover image for Vol. 4 Issue 10‐11

November 2010

Volume 4, Issue 10-11

Pages 782–879

  1. Cover Picture

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. Contents
    5. Review
    6. Research Articles
    7. Biomedical Abstracts
    8. Erratum
    1. Cover Picture: Proteomics – Clinical Applications 10–11/10

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090097

  2. Editorial Board

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. Contents
    5. Review
    6. Research Articles
    7. Biomedical Abstracts
    8. Erratum
    1. Editorial Board: Proteomics – Clinical Applications

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090098

  3. Contents

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. Contents
    5. Review
    6. Research Articles
    7. Biomedical Abstracts
    8. Erratum
    1. Contents – Proteomics – Clinical Applications 10–11'10

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090099

  4. Review

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. Contents
    5. Review
    6. Research Articles
    7. Biomedical Abstracts
    8. Erratum
    1. Hepatitis C virus-induced oxidative stress and mitochondrial dysfunction: A focus on recent advances in proteomics (pages 782–793)

      Maria Paola Simula and Valli De Re

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201000049

  5. Research Articles

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. Contents
    5. Review
    6. Research Articles
    7. Biomedical Abstracts
    8. Erratum
    1. Tissue proteome profiling of preeclamptic placenta using recombinant antibody microarrays (pages 794–807)

      Linda Dexlin-Mellby, Anna Sandström, Magnus Centlow, Sara Nygren, Stefan R. Hansson, Carl A. K. Borrebaeck and Christer Wingren

      Version of Record online: 4 OCT 2010 | DOI: 10.1002/prca.201000001

    2. Secreted protein profile from HepG2 cells incubated by S(−) and R(+) enantiomers of chiral drug warfarin – An analysis in cell-based system and clinical samples (pages 808–815)

      Jing Bai, Chi Bun Ching, Balram Chowbay and Wei Ning Chen

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201000027

    3. Proteome profiling of immortalization-to-senescence transition of human breast epithelial cells identified MAP2K3 as a senescence-promoting protein which is downregulated in human breast cancer (pages 816–828)

      Min Jia, Nazariy Souchelnytskyi, Ulf Hellman, Michael O'Hare, Parmjit S. Jat and Serhiy Souchelnytskyi

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201000006

    4. Proteomic profiling of blood-dialyzer interactome reveals involvement of lectin complement pathway in hemodialysis-induced inflammatory response (pages 829–838)

      Jan Mares, Pavlina Richtrova, Alena Hricinova, Zdenek Tuma, Jiri Moravec, Daniel Lysak and Martin Matejovic

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201000031

    5. Mass spectrometry-based characterization of the vitreous phosphoproteome (pages 839–846)

      Davide Tamburro, Francesco Facchiano, Emanuel F. Petricoin, Lance A. Liotta and Weidong Zhou

      Version of Record online: 4 OCT 2010 | DOI: 10.1002/prca.201000032

  6. Biomedical Abstracts

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. Contents
    5. Review
    6. Research Articles
    7. Biomedical Abstracts
    8. Erratum

    1. Proteomics

      Identification of ciliary neurotrophic factor receptor α as a mediator of neurotoxicity induced by α-synuclein (page 847)

      Jun Liu, Min Shi, Zhen Hong, JianPeng Zhang, Joshua Bradner, Thomas Quinn, Richard P. Beyer, Patrick L. Mcgeer, ShengDi Chen and Jing Zhang

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090064

      This article was originally published in Proteomics 2010, 10, 2138–2150, DOI 10.1002/pmic.200900745

    2. SILAC analysis of oxidative stress-mediated proteins in human pneumocytes: New role for treacle (page 848)

      Xunbao Duan, Steve G. Kelsen, Allen B. Clarkson Jr, Rong Ji and Salim Merali

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090065

      This article was originally published in Proteomics 2010, 10, 2165–2174, DOI 10.1002/pmic.201000020

    3. Proteomic analysis identifies in vivo candidate matrix metalloproteinase-9 substrates in the left ventricle post-myocardial infarction (page 849)

      Rogelio Zamilpa, Elizabeth F. Lopez, Ying Ann Chiao, Qiuxia Dai, Gladys P. Escobar, Kevin Hakala, Susan T. Weintraub and Merry L. Lindsey

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090066

      This article was originally published in Proteomics 2010, 10, 2214–2223, DOI 10.1002/pmic.200900587

    4. Differential expression of protease activity in serum samples of prostate carcinoma patients with metastases (page 850)

      Lennard J. M. Dekker, Peter C. Burgers, Halima Charif, Angelique L. C. T. van Rijswijk, Mark K. Titulaer, Guido Jenster, Rainer Bischoff, Chris H. Bangma and Theo M. Luider

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090067

      This article was originally published in Proteomics 2010, 10, 2348–2358, DOI 10.1002/pmic.200900682

    5. A domain level interaction network of amyloid precursor protein and Aβ of Alzheimer's disease (page 851)

      Victoria M. Perreau, Sandra Orchard, Paul A. Adlard, Shayne A. Bellingham, Roberto Cappai, Giuseppe D. Ciccotosto, Tiffany F. Cowie, Peter J. Crouch, James A. Duce, Genevieve Evin, Noel G. Faux, Andrew F. Hill, Ya Hui Hung, Simon A. James, Qiao-Xin Li, Su San Mok, Deborah J. Tew, Anthony R. White, Ashley I. Bush, Henning Hermjakob and Colin L. Masters

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090068

      This article was originally published in Proteomics 2010, 10, 2377–2395, DOI 10.1002/pmic.200900773

    6. The essentiality of α-2-macroglobulin in human salivary innate immunity against new H1N1 swine origin influenza A virus (page 852)

      Chao-Hsuan Chen, Xing-Quan Zhang, Chih-Wei Lo, Pei-Feng Liu, Yu-Tsueng Liu, Richard L. Gallo, Ming-Fa Hsieh, Robert T. Schooley and Chun-Ming Huang

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090069

      This article was originally published in Proteomics 2010, 10, 2396–2401, DOI 10.1002/pmic.200900775

    7. Comparative proteomic analysis of rat aorta in a subtotal nephrectomy model (page 853)

      Yao-Ping Lin, Meng-Erh Hsu, Yi-Ying Chiou, Hung-Yi Hsu, Hiao-Chien Tsai, Yu-Ju Peng, Chi-Yu Lu, Chien-Yuan Pan, Wen-Chung Yu, Chen-Huan Chen, Chin-Wen Chi and Chao-Hsiung Lin

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090070

      This article was originally published in Proteomics 2010, 10, 2429–2443, DOI 10.1002/pmic.200800658

    8. Global analysis of the rat and human platelet proteome – the molecular blueprint for illustrating multi-functional platelets and cross-species function evolution (page 854)

      Yanbao Yu, Taohua Leng, Dong Yun, Na Liu, Jun Yao, Ying Dai, Pengyuan Yang and Xian Chen

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090071

      This article was originally published in Proteomics 2010, 10, 2444–2457, DOI 10.1002/pmic.200900271

    9. Multivariate denoising methods combining wavelets and principal component analysis for mass spectrometry data (page 855)

      Elise Mostacci, Caroline Truntzer, Hervé Cardot and Patrick Ducoroy

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090072

      This article was originally published in Proteomics 2010, 10, 2564–2572, DOI 10.1002/pmic.200900185

    10. Proteomic analysis of colonic mucosa in a rat model of irritable bowel syndrome (page 856)

      Ying Ding, Bin Lu, Dongbo Chen, Lina Meng, Yan Shen and Shuo Chen

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090073

      This article was originally published in Proteomics 2010, 10, 2620–2630, DOI 10.1002/pmic.200900572

    11. Identification of candidate nasopharyngeal carcinoma serum biomarkers by cancer cell secretome and tissue transcriptome analysis: Potential usage of cystatin A for predicting nodal stage and poor prognosis (page 857)

      Kai-Ping Chang, Chih-Ching Wu, Hua-Chien Chen, Shu-Jen Chen, Pei-Hua Peng, Ngan-Ming Tsang, Li-Yu Lee, Shiau-Chin Liu, Ying Liang, Yun-Shien Lee, Sheng-Po Hao, Yu-Sun Chang and Jau-Song Yu

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090074

      This article was originally published in Proteomics 2010, 10, 2644–2660, DOI 10.1002/pmic.200900620

    12. Proteome profiling reveals gender differences in the composition of human serum (page 858)

      Koichiro Miike, Masashi Aoki, Ryo Yamashita, Yumiko Takegawa, Hideyuki Saya, Teruhisa Miike and Ken-ichi Yamamura

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090075

      This article was originally published in Proteomics 2010, 10, 2678–2691, DOI 10.1002/pmic.200900496

    13. Quantitative proteome analysis of detergent-resistant membranes identifies the differential regulation of protein kinase C isoforms in apoptotic T cells (page 859)

      Therese Solstad, Elisa Bjørgo, Christian J. Koehler, Margarita Strozynski, Knut Martin Torgersen, Kjetil Taskén and Bernd Thiede

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090076

      This article was originally published in Proteomics 2010, 10, 2758–2768, DOI 10.1002/pmic.201000164

    14. Study of monocyte membrane proteome perturbation during lipopolysaccharide-induced tolerance using iTRAQ-based quantitative proteomic approach (page 860)

      Huoming Zhang, Changqing Zhao, Xin Li, Yi Zhu, Chee Sian Gan, Yong Wang, Timothy Ravasi, Pei-Yuan Qian, Siew Cheng Wong and Siu Kwan Sze

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090077

      This article was originally published in Proteomics 2010, 10, 2780–2789, DOI 10.1002/pmic.201000066

    15. Time-resolved quantitative proteome profiling of host–pathogen interactions: The response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells (page 861)

      Frank Schmidt, Sandra S. Scharf, Petra Hildebrandt, Marc Burian, Jörg Bernhardt, Vishnu Dhople, Julia Kalinka, Melanie Gutjahr, Elke Hammer and Uwe Völker

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090078

      This article was originally published in Proteomics 2010, 10, 2801–2811, DOI 10.1002/pmic.201000045

    16. Proteomic analysis of low- to high-grade astrocytomas reveals an alteration of the expression level of raf kinase inhibitor protein and nucleophosmin (page 862)

      Marcela Gimenez, Vanessa Cristina de Oliveira Souza, Clarice Izumi, Manuela R. Barbieri, Roger Chammas, Sueli Mieko Oba-Shinjo, Miyuki Uno, Suely Kazue Nagahashi Marie and José Cesar Rosa

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090079

      This article was originally published in Proteomics 2010, 10, 2812–2821, DOI 10.1002/pmic.200900722

    17. Proteome analysis of brain in murine experimental autoimmune encephalomyelitis (page 863)

      Abolhassan Shahzadeh Fazeli, Davood Nasrabadi, Mohammad Hossein Sanati, Alireza Pouya, Saleh M. Ibrahim, Hossein Baharvand and Ghasem Hosseini Salekdeh

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090080

      This article was originally published in Proteomics 2010, 10, 2822–2832, DOI 10.1002/pmic.200900507

    18. Comparative profiling of highly enriched 22L and Chandler mouse scrapie prion protein preparations (page 864)

      Roger A. Moore, Andrew Timmes, Phillip A. Wilmarth and Suzette A. Priola

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090081

      This article was originally published in Proteomics 2010, 10, 2858–2869, DOI 10.1002/pmic.201000104

    19. Peptidomic profiling of human cerebrospinal fluid identifies YPRPIHPA as a novel substrate for prolylcarboxypeptidase (page 865)

      Xuemei Zhao, Katie Southwick, Helene L. Cardasis, Yi Du, Michael E. Lassman, Dan Xie, Mohamed El-Sherbeini, Wayne M. Geissler, KellyAnn D. Pryor, Andreas Verras, Margarita Garcia-Calvo, Dong-Ming Shen, Nathan A. Yates, Shirly Pinto and Ronald C. Hendrickon

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090082

      This article was originally published in Proteomics 2010, 10, 2882–2886, DOI 10.1002/pmic.201000145

    20. Plasma and liver proteomic analysis of 3Z-3-[(1H-pyrrol-2-yl)-methylidene]-1-(1-piperidinylmethyl)-1,3-2H-indol-2-one-induced hepatotoxicity in Wistar rats (page 866)

      Ying Wang, Baohua Yang, Chunqi Wu, Zhibing Zheng, Ye Yuan, ZhongHui Hu, HuaZhi Ma, Song Li, Mingyang Liao and Quanjun Wang

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090083

      This article was originally published in Proteomics 2010, 10, 2927–2941, DOI 10.1002/pmic.200900699

    21. Electrophoresis

      Indications for cell stress in response to adenoviral and baculoviral gene transfer observed by proteome profiling of human cancer cells (page 867)

      Christopher Gerner, Verena J. Haudek-Prinz, Andreas Lackner, Annemarie Losert, Barbara Peter-Vörösmarty, Olga Lorenz and Michael Grusch

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090084

      This article was originally published in Electrophoresis 2010, 31, 1822–1832, DOI 10.1002/elps.200900753

    22. A quantitative investigation of fucosylated serum glycoproteins with application to esophageal adenocarcinoma (page 868)

      Benjamin Mann, Milan Madera, Iveta Klouckova, Yehia Mechref, Lacey E. Dobrolecki, Robert J. Hickey, Zane T. Hammoud and Milos V. Novotny

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090085

      This article was originally published in Electrophoresis 2010, 31, 1833–1841, DOI 10.1002/elps.201000046

    23. A comparative phosphoproteomic analysis of a human tumor metastasis model using a label-free quantitative approach (page 869)

      Xiaolei Xie, Shun Feng, Huy Vuong, Yashu Liu, Steve Goodison and David M. Lubman

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090086

      This article was originally published in Electrophoresis 2010, 31, 1842–1852, DOI 10.1002/elps.200900752

    24. Post-translation modification of proteins in tears (page 870)

      Jingjing You, Anna Fitzgerald, Paul J. Cozzi, Zhenjun Zhao, Peter Graham, Pamela J. Russell, Bradley J. Walsh, Mark Willcox, Ling Zhong, Valerie Wasinger and Yong Li

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090087

      This article was originally published in Electrophoresis 2010, 31, 1853–1861, DOI 10.1002/elps.200900755

    25. IEF pattern classification-derived criteria for the identification of epoetin-δ in urine (page 871)

      Séverine Lamon, Julien Boccard, Pierre-Edouard Sottas, Nicolas Glatz, Grégoire Wuerzner, Neil Robinson and Martial Saugy

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090088

      This article was originally published in Electrophoresis 2010, 31, 1918–1924, DOI 10.1002/elps.200900645

    26. Optimized sample preparation of endoscopic collected pancreatic fluid for SDS-PAGE analysis (page 872)

      Joao A. Paulo, Linda S. Lee, Bechien Wu, Kathryn Repas, Peter A. Banks, Darwin L. Conwell and Hanno Steen

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090089

      This article was originally published in Electrophoresis 2010, 31, 2377–2387, DOI 10.1002/elps.200900762

    27. Application of champedak mannose-binding lectin in the glycoproteomic profiling of serum samples unmasks reduced expression of alpha-2 macroglobulin and complement factor B in patients with nasopharyngeal carcinoma (page 873)

      Ramarao Seriramalu, Wei Wei Pang, Jaime Jacqueline Jayapalan, Emida Mohamed, Puteri Shafinaz Abdul-Rahman, Anita Zarina Bustam, Alan Soo-Beng Khoo and Onn Haji Hashim

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090090

      This article was originally published in Electrophoresis 2010, 31, 2388–2395, DOI 10.1002/elps.201000164

    28. Whole blood assay for trypsin activity using polyanionic focusing gel electrophoresis (page 874)

      Roy B. Lefkowitz, Geert W. Schmid-Schönbein and Michael J. Heller

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090091

      This article was originally published in Electrophoresis 2010, 31, 2442–2451, DOI 10.1002/elps.201000011

    29. Combinatorial peptide ligand library plasma treatment: Advantages for accessing low-abundance proteins (page 875)

      Olivia Beseme, Marie Fertin, Hervé Drobecq, Philippe Amouyel and Florence Pinet

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090092

      This article was originally published in Electrophoresis 2010, 31, 2697–2704, DOI 10.1002/elps.201000188

    30. Proteomic profiling of human colon cancer cells treated with the histone deacetylase inhibitor belinostat (page 876)

      Hans Christian Beck, Jørgen Petersen, Søren Jensby Nielsen, Christian Morszeck, Peter B. Jensen, Maxwell Sehested and Morten Grauslund

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090093

      This article was originally published in Electrophoresis 2010, 31, 2714–2721, DOI 10.1002/elps.201000033

    31. Precautions to improve the accuracy of quantitative determinations of biomarkers in clinical diagnostics (page 877)

      Nasim Ghasemzadeh, Tore W. Wilhelmsen, Fred Nyberg and Stellan Hjertèn

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090094

      This article was originally published in Electrophoresis 2010, 31, 2722–2729, DOI 10.1002/elps.201000243

    32. Recombinant clotting factor VIII concentrates: Heterogeneity and high-purity evaluation (page 878)

      Gian Maria D'Amici, Anna Maria Timperio, Federica Gevi, Giuliano Grazzini and Lello Zolla

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090095

      This article was originally published in Electrophoresis 2010, 31, 2730–2739, DOI 10.1002/elps.201000216

  7. Erratum

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. Contents
    5. Review
    6. Research Articles
    7. Biomedical Abstracts
    8. Erratum
    1. You have free access to this content
      Erratum: Proteomic analyses of monocytes obtained from Hispanic women with HIV-associated dementia show depressed antioxidants (page 879)

      Stephanie Kraft-Terry, Yamil Gerena, Valerie Wojna, Marines Plaud-Valentin, Yolanda Rodriguez, Pawel Ciborowski, Raul Mayo, Richard Skolasky, Howard E. Gendelman and Loyda M. Meléndez

      Version of Record online: 5 NOV 2010 | DOI: 10.1002/prca.201090096

      This article corrects:

      Proteomic analyses of monocytes obtained from Hispanic women with HIV-associated dementia show depressed antioxidants

      Vol. 4, Issue 8-9, 706–714, Version of Record online: 13 JUL 2010

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