PROTEOMICS - Clinical Applications

Cover image for Vol. 5 Issue 7‐8

August 2011

Volume 5, Issue 7-8

Pages 383–482

  1. Cover Picture

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In this issue
    5. Contents
    6. Research Articles
    7. Technical Briefs
    8. Biomedical Abstracts
  2. Editorial Board

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In this issue
    5. Contents
    6. Research Articles
    7. Technical Briefs
    8. Biomedical Abstracts
  3. In this issue

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In this issue
    5. Contents
    6. Research Articles
    7. Technical Briefs
    8. Biomedical Abstracts
    1. In this issue

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190061

  4. Contents

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In this issue
    5. Contents
    6. Research Articles
    7. Technical Briefs
    8. Biomedical Abstracts
  5. Research Articles

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In this issue
    5. Contents
    6. Research Articles
    7. Technical Briefs
    8. Biomedical Abstracts
    1. A database of reaction monitoring mass spectrometry assays for elucidating therapeutic response in cancer (pages 383–396)

      Elizabeth R. Remily-Wood, Richard Z. Liu, Yun Xiang, Yi Chen, C. Eric Thomas, Neal Rajyaguru, Laura M. Kaufman, Joana E. Ochoa, Lori Hazlehurst, Javier Pinilla-Ibarz, Jeffrey Lancet, Guolin Zhang, Eric Haura, David Shibata, Timothy Yeatman, Keiran S. M. Smalley, William S. Dalton, Emina Huang, Ed Scott, Gregory C. Bloom, Steven A. Eschrich and John M. Koomen

      Version of Record online: 8 JUN 2011 | DOI: 10.1002/prca.201000115

    2. Utility of formalin-fixed, paraffin-embedded liver biopsy specimens for global proteomic analysis in nonalcoholic steatohepatitis (pages 397–404)

      Lauren N. Bell, Romil Saxena, Samer G. Mattar, Jinsam You, Mu Wang and Naga Chalasani

      Version of Record online: 8 JUN 2011 | DOI: 10.1002/prca.201000144

    3. MALDI-TOF MS profiling as the first-tier screen for sickle cell disease in neonates: Matching throughput to objectives (pages 405–414)

      Johan Hachani, Sophie Duban-Deweer, Gwënaël Pottiez, Gilles Renom, Christophe Flahaut and Jean-Marc Périni

      Version of Record online: 13 JUL 2011 | DOI: 10.1002/prca.201000093

    4. Proteins in leaked amniotic fluid as biomarkers diagnostic for prelabor rupture of membranes (pages 415–421)

      Tao Wang, Rong Zhou, Lin Zhang, Yanyun Wang, Chang ping Song, Wei Lin, Xiaoyu Niu, Yong Lin and Huaizhong Hu

      Version of Record online: 8 JUN 2011 | DOI: 10.1002/prca.201000123

    5. Identification of β2-microglobulin as a urinary biomarker for chronic allograft nephropathy using proteomic methods (pages 422–431)

      Olwyn Johnston, Hilary Cassidy, Séin O'Connell, Aisling O'Riordan, William Gallagher, Patricia B. Maguire, Kieran Wynne, Gerard Cagney, Michael P. Ryan, Peter J. Conlon and Tara McMorrow

      Version of Record online: 13 JUL 2011 | DOI: 10.1002/prca.201000160

    6. Proteome and cytokine serum profiling to diagnose a mycosis fungoides (pages 432–439)

      Sergei A. Moshkovskii, Elizaveta E. Sokolova, Ekaterina V. Brattseva, Maria A. Karpova, Mikhail A. Pyatnitskiy, Anna A. Kubanova and Alexander I. Archakov

      Version of Record online: 13 JUL 2011 | DOI: 10.1002/prca.201000165

    7. Improved signal processing and normalization for biomarker protein detection in broad-mass-range TOF mass spectra from clinical samples (pages 440–447)

      Maureen B. Tracy, William E. Cooke, Christine L. Gatlin, Lisa H. Cazares, Dennis M. Weaver, O. John Semmes, Eugene R. Tracy, Dennis M. Manos and Dariya I. Malyarenko

      Version of Record online: 13 JUL 2011 | DOI: 10.1002/prca.201000095

  6. Technical Briefs

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In this issue
    5. Contents
    6. Research Articles
    7. Technical Briefs
    8. Biomedical Abstracts
    1. On-tissue identification of insulin: In situ reduction coupled with mass spectrometry imaging (pages 448–453)

      Shamina M. Green-Mitchell, Lisa H. Cazares, O. John Semmes, Jerry L. Nadler and Julius O. Nyalwidhe

      Version of Record online: 8 JUN 2011 | DOI: 10.1002/prca.201000152

    2. Mass spectrometric immunoassay of intact insulin and related variants for population proteomics studies (pages 454–459)

      Paul E. Oran, Jason W. Jarvis, Chad R. Borges, Nisha D. Sherma and Randall W. Nelson

      Version of Record online: 8 JUN 2011 | DOI: 10.1002/prca.201000112

  7. Biomedical Abstracts

    1. Top of page
    2. Cover Picture
    3. Editorial Board
    4. In this issue
    5. Contents
    6. Research Articles
    7. Technical Briefs
    8. Biomedical Abstracts
    1. Proteomics

      Protein expression profiles distinguish between experimental invasive pulmonary aspergillosis and Pseudomonas pneumonia (page 460)

      Denise A. Gonzales, Carlos De Torre, Honghui Wang, Christopher B. Devor, Peter J. Munson, Sai-Xia Ying, Steven J. Kern, Ruta Petraitiene, David L. Levens, Thomas J. Walsh and Anthony F. Suffredini

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190036

      This article was originally published in Proteomics 2010, 10, 4270–4280, DOI 10.1002/pmic.200900768

    2. Effect of the Rho kinase inhibitor Y-27632 on the proteome of hearts with ischemia–reperfusion injury (page 461)

      Virgilio J. J. Cadete, Jolanta Sawicka, Dorota Polewicz, Adrian Doroszko, Mieczyslaw Wozniak and Grzegorz Sawicki

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190037

      This article was originally published in Proteomics 2010, 10, 4377–4385, DOI 10.1002/pmic.201000393

    3. Plasma proteome analysis in diet-induced obesity-prone and obesity-resistant rats (page 462)

      Jung-Won Choi, Xia Wang, Jeong In Joo, Dong Hyun Kim, Tae Seok Oh, Duk Kwon Choi and Jong Won Yun

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190038

      This article was originally published in Proteomics 2010, 10, 4386–4400, DOI 10.1002/pmic.201000391

    4. Plasma profiles in active systemic juvenile idiopathic arthritis: Biomarkers and biological implications (page 463)

      Xuefeng B. Ling, Jane L. Park, Tanya Carroll, Khoa D. Nguyen, Kenneth Lau, Claudia Macaubas, Edward Chen, Tzielan Lee, Christy Sandborg, Diana Milojevic, John T. Kanegaye, Susanna Gao, Jane Burns, James Schilling and Elizabeth D. Mellins

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190039

      This article was originally published in Proteomics 2010, 10, 4415–4430, DOI 10.1002/pmic.201000298

    5. A systems biology analysis of metastatic melanoma using in-depth three-dimensional protein profiling (page 464)

      Mee-Jung Han, Huan Wang, Lynn A. Beer, Hsin-Yao Tang, Meenhard Herlyn and David W. Speicher

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190040

      This article was originally published in Proteomics 2010, 10, 4450–4462, DOI 10.1002/pmic.200900549

    6. Proteomic analysis of intestinal ischemia/reperfusion injury and ischemic preconditioning in rats reveals the protective role of aldose reductase (page 465)

      Ke-Xuan Liu, Cai Li, Yun-Sheng Li, Bao-long Yuan, Miao Xu, Zhengyuan Xia and Wen-Qi Huang

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190041

      This article was originally published in Proteomics 2010, 10, 4463–4475, DOI 10.1002/pmic.201000078

    7. Proteomic analysis of the anti-inflammatory action of minocycline (page 466)

      Christopher R. Dunston, Helen R. Griffiths, Peter A. Lambert, Susan Staddon and Ann B. Vernallis

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190042

      This article was originally published in Proteomics 2011, 11, 42–51, DOI 10.1002/pmic.201000273

    8. Identification of host factors involved in coronavirus replication by quantitative proteomics analysis (page 467)

      Mijke W. Vogels, Bas W. M. van Balkom, Dora V. Kaloyanova, Joseph J. Batenburg, Albert J. Heck, J. Bernd Helms, Peter J. M. Rottier and Cornelis A. M. de Haan

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190043

      This article was originally published in Proteomics 2011, 11, 64–80, DOI 10.1002/pmic.201000309

    9. Peripheral profiling analysis for bipolar disorder reveals markers associated with reduced cell survival (page 468)

      Marlis Herberth, Dagmar Koethe, Yishai Levin, Emanuel Schwarz, Natalia D. Krzyszton, Stephanie Schoeffmann, Hermelindis Ruh, Hassan Rahmoune, Laura Kranaster, Torsten Schoenborn, Markus F. Leweke, Paul C. Guest and Sabine Bahn

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190044

      This article was originally published in Proteomics 2011, 11, 94–105, DOI 10.1002/pmic.201000291

    10. A large set of estrogen receptor β-interacting proteins identified by tandem affinity purification in hormone-responsive human breast cancer cell nuclei (page 469)

      Giovanni Nassa, Roberta Tarallo, Concetta Ambrosino, Angela Bamundo, Lorenzo Ferraro, Ornella Paris, Maria Ravo, Pietro H. Guzzi, Mario Cannataro, Marc Baumann, Tuula A. Nyman, Ernesto Nola and Alessandro Weisz

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190045

      This article was originally published in Proteomics 2011, 11, 159–165, DOI 10.1002/pmic.201000344

    11. Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS (page 470)

      Roberta Tarallo, Angela Bamundo, Giovanni Nassa, Ernesto Nola, Ornella Paris, Concetta Ambrosino, Angelo Facchiano, Marc Baumann, Tuula A. Nyman and Alessandro Weisz

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190046

      This article was originally published in Proteomics 2011, 11, 172–179, DOI 10.1002/pmic.201000217

    12. Apolipoprotein A-I as a candidate serum marker for the response to lithium treatment in bipolar disorder (page 471)

      Alessandra Sussulini, Hassan Dihazi, Claudio Eduardo Muller Banzato, Marco Aurelio Zezzi Arruda, Walter Stühmer, Hannelore Ehrenreich, Olaf Jahn and Hartmut D. Kratzin

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190047

      This article was originally published in Proteomics 2011, 11, 261–269, DOI 10.1002/pmic.201000371

    13. Proteomic analysis of mesenchymal stem-like cells derived from ovarian teratoma: Potential role of glutathione S-transferase M2 in ovarian teratoma (page 472)

      Ihn Han, Soo-Jin Jeong, Hyo-Jung Lee, Wonil Koh, Hyo-Jeong Lee, Eun-Ok Lee, Hyun Seok Kim, Soo Jin Lee, Chang-Yan Chen, Min-Hyung Jung and Sung-Hoon Kim

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190048

      This article was originally published in Proteomics 2011, 11, 352–360, DOI 10.1002/pmic.201000475

    14. Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti-lymphotoxin-α antibody (page 473)

      Natalie E. Castellana, Krista McCutcheon, Victoria C. Pham, Kristin Harden, Allen Nguyen, Judy Young, Camellia Adams, Kurt Schroeder, David Arnott, Vineet Bafna, Jane L. Grogan and Jennie R. Lill

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190049

      This article was originally published in Proteomics 2011, 11, 395–405, DOI 10.1002/pmic.201000487

    15. Subcellular proteomics revealed the epithelial–mesenchymal transition phenotype in lung cancer (page 474)

      Li-Ping Li, Chun-Hua Lu, Zhi-Peng Chen, Feng Ge, Tong Wang, Wei Wang, Chuan-Le Xiao, Xin-Feng Yin, Langxia Liu, Jian-Xing He and Qing-Yu He

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190050

      This article was originally published in Proteomics 2011, 11, 429–439, DOI 10.1002/pmic.200900819

    16. Energy matters: Mitochondrial proteomics for biomedicine (page 475)

      Elisabetta Gianazza, Ivano Eberini, Cristina Sensi, Maria Barile, Lodovica Vergani and Maria Antonietta Vanoni

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190051

      This article was originally published in Proteomics 2011, 11, 657–674, DOI 10.1002/pmic.201000412

    17. Proteomics of human embryonic stem cells (page 476)

      Chris S. Hughes, Amelia A. Nuhn, Lynne M. Postovit and Gilles A. Lajoie

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190052

      This article was originally published in Proteomics 2011, 11, 675–690, DOI 10.1002/pmic.201000407

    18. Conditioned media from cell lines: A complementary model to clinical specimens for the discovery of disease-specific biomarkers (page 477)

      Paul Dowling and Martin Clynes

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190053

      This article was originally published in Proteomics 2011, 11, 794–804, DOI 10.1002/pmic.201000530

    19. Renal fibrosis: Insight from proteomics in animal models and human disease (page 478)

      Julie Klein, Panagiotis Kavvadas, Niki Prakoura, Fani Karagianni, Joost P. Schanstra, Jean-Loup Bascands and Aristidis Charonis

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190054

      This article was originally published in Proteomics 2011, 11, 805–815, DOI 10.1002/pmic.201000380

    20. Proteomics in pancreatic cancer research (page 479)

      Daniela Cecconi, Marta Palmieri and Massimo Donadelli

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190055

      This article was originally published in Proteomics 2011, 11, 816–828, DOI 10.1002/pmic.201000401

    21. Electrophoresis

      Comprehensive analysis of low-abundance proteins in human urinary exosomes using peptide ligand library technology, peptide OFFGEL fractionation and nanoHPLC-chip-MS/MS (page 480)

      Yuan Zhang, Yanyan Li, Feng Qiu and Zongyin Qiu

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190056

      This article was originally published in Electrophoresis 2010, 31, 3797–3807, DOI 10.1002/elps.201000401

    22. Detection of immunogenic parasite and host-specific proteins in the sera of active and chronic individuals infected with Toxoplasma gondii (page 481)

      Chen Yeng, Emelia Osman, Zeehaida Mohamed and Rahmah Noordin

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190057

      This article was originally published in Electrophoresis 2010, 31, 3843–3849, DOI 10.1002/elps.201000038

    23. Proteomic approaches in myeloid leukemia (page 482)

      Jitendra Kumar Kanaujiya, Savita Lochab, Pooja Pal, Maximilian Christopeit, Sheo Mohan Singh, Sabyasachi Sanyal, Gerhard Behre and Arun Kumar Trivedi

      Version of Record online: 29 JUL 2011 | DOI: 10.1002/prca.201190058

      This article was originally published in Electrophoresis 2011, 32, 357–367, DOI 10.1002/elps.201000428

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