SEARCH

SEARCH BY CITATION

References

  • 1
    White SH ( 2004) The progress of membrane protein structure determination. Protein Sci 13: 19481949.
  • 2
    Van den Berg B, Clemons WM, Jr., Collinson I, Modis Y, Hartmann E, Harrison SC, Rapoport TA ( 2004) X-ray structure of a protein-conducting channel. Nature 427: 3644.
  • 3
    White SH, von Heijne G ( 2008) How translocons select transmembrane helices. Annu Rev Biophys 37: 2342.
  • 4
    Zimmer J, Nam Y, Rapoport TA ( 2008) Structure of a complex of the ATPase SecA and the protein-translocation channel. Nature 455: 936943.
  • 5
    Tajkhorshid E, Nollert P, Jensen MO, Miercke LJ, O'Connell J, Stroud RM, Schulten K ( 2002) Control of the selectivity of the aquaporin water channel family by global orientational tuning. Science 296: 525530.
  • 6
    Doyle DA, Morais Cabral J, Pfuetzner RA, Kuo A, Gulbis JM, Cohen SL, Chait BT, MacKinnon R ( 1998) The structure of the potassium channel: molecular basis of K+ conduction and selectivity. Science 280: 6977.
  • 7
    Gouaux E, Mackinnon R ( 2005) Principles of selective ion transport in channels and pumps. Science 310: 14611465.
  • 8
    Palczewski K, Kumasaka T, Hori T, Behnke CA, Motoshima H, Fox BA, Le Trong I, Teller DC, Okada T, Stenkamp RE, Yamamoto M, Miyano M ( 2000) Crystal structure of rhodopsin: a G protein-coupled receptor. Science 289: 739745.
  • 9
    Park JH, Scheerer P, Hofmann KP, Choe HW, Ernst OP ( 2008) Crystal structure of the ligand-free G-protein-coupled receptor opsin. Nature 454: 183187.
  • 10
    Scheerer P, Park JH, Hildebrand PW, Kim YJ, Krauss N, Choe HW, Hofmann KP, Ernst OP ( 2008) Crystal structure of opsin in its G-protein-interacting conformation. Nature 455: 497502.
  • 11
    Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Kuhn P, Weis WI, Kobilka BK, Stevens RC ( 2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 318: 12581265.
  • 12
    Rasmussen SG, Choi HJ, Rosenbaum DM, Kobilka TS, Thian FS, Edwards PC, Burghammer M, Ratnala VR, Sanishvili R, Fischetti RF, Schertler GF, Weis WI, Kobilka BK ( 2007) Crystal structure of the human beta2 adrenergic G-protein-coupled receptor. Nature 450: 383387.
  • 13
    Warne T, Serrano-Vega MJ, Baker JG, Moukhametzianov R, Edwards PC, Henderson R, Leslie AG, Tate CG, Schertler GF ( 2008) Structure of a beta1-adrenergic G-protein-coupled receptor. Nature 454: 486491.
  • 14
    Jaakola VP, Griffith MT, Hanson MA, Cherezov V, Chien EY, Lane JR, Ijzerman AP, Stevens RC ( 2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science 322: 12111217.
  • 15
    Landau E, Rosenbusch J ( 1996) Lipidic cubic phases: a novel concept for the crystallization of membrane proteins. Proc Natl Acad Sci USA 93: 1453214535.
  • 16
    Caffrey M ( 2008) Crystallizing membrane proteins for structure determination: use of lipidic mesophases. Annu Rev Biophys. in press
  • 17
    Pebay-Peyroula E, Rummel G, Rosenbusch J, Landau E ( 1997) X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases. Science 277: 16761681.
  • 18
    Luecke H, Richter H, Lanyi J ( 1998) Proton transfer pathways in bacteriorhodopsin at 2.3 angstrom resolution. Science 280: 19341937.
  • 19
    Cherezov V, Clogston J, Papiz MZ, Caffrey M ( 2006) Room to move: crystallizing membrane proteins in swollen lipidic mesophases. J Mol Biol 357: 16051618.
  • 20
    Cherezov V, Peddi A, Muthusubramaniam L, Zheng YF, Caffrey M ( 2004) A robotic system for crystallizing membrane and soluble proteins in lipidic mesophases. Acta Crystallogr D Biol Crystallogr 60: 17951807.
  • 21
    Faham S, Boulting GL, Massey EA, Yohannan S, Yang D, Bowie JU ( 2005) Crystallization of bacteriorhodopsin from bicelle formulations at room temperature. Protein Sci 14: 836840.
  • 22
    Faham S, Bowie JU ( 2002) Bicelle crystallization: a new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure. J Mol Biol 316: 16.
  • 23
    Faham S, Rachna U, Abramson J, Bowie J. In: DelucasL, Ed. Current topics in membranes. Elsevier Press Atlanta GA. (in press).
  • 24
    Sanders CR, II, Landis GC ( 1995) Reconstitution of membrane proteins into lipid-rich bilayered mixed micelles for NMR studies. Biochemistry 34: 40304040.
  • 25
    Sanders CR, Prosser RS ( 1998) Bicelles: a model membrane system for all seasons? Structure 6: 12271234.
  • 26
    Nieh MP, Raghunathan VA, Glinka CJ, Harroun TA, Pabst G, Katsaras J ( 2004) Magnetically alignable phase of phospholipid “bicelle” mixtures is a chiral nematic made up of wormlike micelles. Langmuir 20: 78937897.
  • 27
    Triba MN, Warschawski DE, Devaux PF ( 2005) Reinvestigation by phosphorus NMR of lipid distribution in bicelles. Biophys J 88: 18871901.
  • 28
    van Dam L, Karlsson G, Edwards K ( 2004) Direct observation and characterization of DMPC/DHPC aggregates under conditions relevant for biological solution NMR. Biochim Biophys Acta 1664: 241256.
  • 29
    Prosser RS, Hwang JS, Vold RR ( 1998) Magnetically aligned phospholipid bilayers with positive ordering: a new model membrane system. Biophys J 74: 24052418.
  • 30
    Luecke H, Schobert B, Stagno J, Imasheva ES, Wang JM, Balashov SP, Lanyi JK ( 2008) Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore. Proc Natl Acad Sci USA 105: 1656116565.
  • 31
    Ujwal R, Cascio D, Colletier JP, Faham S, Zhang J, Toro L, Ping P, Abramson J ( 2008) The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating. Proc Natl Acad Sci USA 105: 1774217747.
  • 32
    Prive GG, Verner GE, Weitzman C, Zen KH, Eisenberg D, Kaback HR ( 1994) Fusion proteins as tools for crystallization: the lactose permease from Escherichia coli. Acta Crystallogr D Biol Crystallogr 50: 375379.
  • 33
    Iwata S, Ostermeier C, Ludwig B, Michel H ( 1995) Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376: 660669.
  • 34
    Zhou Y, Morais-Cabral JH, Kaufman A, MacKinnon R ( 2001) Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution. Nature 414: 4348.
  • 35
    Fellouse FA, Esaki K, Birtalan S, Raptis D, Cancasci VJ, Koide A, Jhurani P, Vasser M, Wiesmann C, Kossiakoff AA, Koide S, Sidhu SS ( 2007) High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries. J Mol Biol 373: 924940.
  • 36
    Tereshko V, Uysal S, Koide A, Margalef K, Koide S, Kossiakoff AA ( 2008) Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold. Protein Sci 17: 11751187.
  • 37
    Day PW, Rasmussen SG, Parnot C, Fung JJ, Masood A, Kobilka TS, Yao XJ, Choi HJ, Weis WI, Rohrer DK, Kobilka BK ( 2007) A monoclonal antibody for G protein-coupled receptor crystallography. Nat Methods 4: 927929.
  • 38
    Rosenbaum DM, Cherezov V, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Yao XJ, Weis WI, Stevens RC, Kobilka BK ( 2007) GPCR engineering yields high-resolution structural insights into beta2-adrenergic receptor function. Science 318: 12661273.
  • 39
    Donahue JP, Patel H, Anderson WF, Hawiger J ( 1994) Three-dimensional structure of the platelet integrin recognition segment of the fibrinogen gamma chain obtained by carrier protein-driven crystallization. Proc Natl Acad Sci USA 91: 1217812182.
  • 40
    Smyth DR, Mrozkiewicz MK, McGrath WJ, Listwan P, Kobe B ( 2003) Crystal structures of fusion proteins with large-affinity tags. Protein Sci 12: 13131322.
  • 41
    Zhan Y, Song X, Zhou GW ( 2001) Structural analysis of regulatory protein domains using GST-fusion proteins. Gene 281: 19.
  • 42
    Standfuss J, Xie G, Edwards PC, Burghammer M, Oprian DD, Schertler GF ( 2007) Crystal structure of a thermally stable rhodopsin mutant. J Mol Biol 372: 11791188.
  • 43
    Lau FW, Nauli S, Zhou Y, Bowie JU ( 1999) Changing single side-chains can greatly enhance the resistance of a membrane protein to irreversible inactivation. J Mol Biol 290: 559564.
  • 44
    Zhou Y, Bowie JU ( 2000) Building a thermostable membrane protein. J Biol Chem 275: 69756979.
  • 45
    Abramson J, Smirnova I, Kasho V, Verner G, Kaback HR, Iwata S ( 2003) Structure and mechanism of the lactose permease of Escherichia coli. Science 301: 610615.
  • 46
    Smirnova IN, Kaback HR ( 2003) A mutation in the lactose permease of Escherichia coli that decreases conformational flexibility and increases protein stability. Biochemistry 42: 30253031.
  • 47
    Serrano-Vega MJ, Magnani F, Shibata Y, Tate CG ( 2008) Conformational thermostabilization of the beta1-adrenergic receptor in a detergent-resistant form. Proc Natl Acad Sci USA 105: 877882.
  • 48
    Grisshammer R, Duckworth R, Henderson R ( 1993) Expression of a rat neurotensin receptor in Escherichia coli. Biochem J 295 ( Pt 2): 571576.
  • 49
    Magnani F, Shibata Y, Serrano-Vega MJ, Tate CG ( 2008) Co-evolving stability and conformational homogeneity of the human adenosine A2a receptor. Proc Natl Acad Sci USA 105: 1074410749.
  • 50
    Struthers M, Yu H, Oprian DD ( 2000) G protein-coupled receptor activation: analysis of a highly constrained, “straitjacketed” rhodopsin. Biochemistry 39: 79387942.
  • 51
    Xie G, Gross AK, Oprian DD ( 2003) An opsin mutant with increased thermal stability. Biochemistry 42: 19952001.
  • 52
    Roth CB, Hanson MA, Stevens RC ( 2008) Stabilization of the human beta2-adrenergic receptor TM4-TM3-TM5 helix interface by mutagenesis of Glu122(3.41), a critical residue in GPCR structure. J Mol Biol 376: 13051319.
  • 53
    Davidson AR ( 2006) Multiple sequence alignment as a guideline for protein engineering strategies. Methods Mol Biol 340: 171181.
  • 54
    Martin A, Damian M, Laguerre M, Parello J, Pucci B, Serre L, Mary S, Marie J, Baneres JL ( 2009) Engineering a G protein-coupled receptor for structural studies: stabilization of the BLT1 receptor ground state. Protein Sci 18: 727734.
  • 55
    McCusker EC, Bane SE, O'Malley MA, Robinson AS ( 2007) Heterologous GPCR expression: a bottleneck to obtaining crystal structures. Biotechnol Prog 23: 540547.
  • 56
    Breyer RM, Strosberg AD, Guillet JG ( 1990) Mutational analysis of ligand binding activity of beta 2 adrenergic receptor expressed in Escherichia coli. EMBO J 9: 26792684.
  • 57
    Skretas G, Georgiou G ( 2008) Engineering G protein-coupled receptor expression in bacteria. Proc Natl Acad Sci USA 105: 1474714748.
  • 58
    Skretas G, Georgiou G ( 2009) Genetic analysis of G protein-coupled receptor expression in Escherichia coli: inhibitory role of DnaJ on the membrane integration of the human central cannabinoid receptor. Biotechnol Bioeng 102: 357367.
  • 59
    Sarkar CA, Dodevski I, Kenig M, Dudli S, Mohr A, Hermans E, Pluckthun A ( 2008) Directed evolution of a G protein-coupled receptor for expression, stability, and binding selectivity. Proc Natl Acad Sci USA 105: 1480814813.
  • 60
    Roosild TP, Greenwald J, Vega M, Castronovo S, Riek R, Choe S ( 2005) NMR structure of Mistic, a membrane-integrating protein for membrane protein expression. Science 307: 13171321.
  • 61
    Massey-Gendel E, Zhao A, Boulting G, Kim HY, Balamotis MA, Seligman LM, Nakamoto RK, Bowie JU ( 2009) Genetic selection system for improving recombinant membrane protein expression in E. coli Protein Sci 18: 372383.
  • 62
    Miroux B, Walker JE ( 1996) Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J Mol Biol 260: 289298.
  • 63
    Klammt C, Schwarz D, Dotsch V, Bernhard F ( 2007) Cell-free production of integral membrane proteins on a preparative scale. Methods Mol Biol 375: 5778.
  • 64
    Klammt C, Schwarz D, Eifler N, Engel A, Piehler J, Haase W, Hahn S, Dotsch V, Bernhard F ( 2007) Cell-free production of G protein-coupled receptors for functional and structural studies. J Struct Biol 158: 482493.
  • 65
    Klammt C, Schwarz D, Lohr F, Schneider B, Dotsch V, Bernhard F ( 2006) Cell-free expression as an emerging technique for the large scale production of integral membrane protein. FEBS J 273: 41414153.
  • 66
    Chen YJ, Pornillos O, Lieu S, Ma C, Chen AP, Chang G ( 2007) X-ray structure of EmrE supports dual topology model. Proc Natl Acad Sci USA 104: 1899919004.
  • 67
    Wang G ( 2008) NMR of membrane-associated peptides and proteins. Curr Protein Pept Sci 9: 5069.
  • 68
    McDermott AE ( 2009) Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR. Annu Rev Biophys.
  • 69
    Gong XM, Franzin CM, Thai K, Yu J, Marassi FM ( 2007) Nuclear magnetic resonance structural studies of membrane proteins in micelles and bilayers. Methods Mol Biol 400: 515529.