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References

  • 1
    Doolittle RF ( 1992) A detailed consideration of a principal domain of vertebrate fibrinogen and its relatives. Protein Sci 1: 15631577.
  • 2
    Jones FS, Hoffman S, Cunningham BS, Edelman GM ( 1989). A detailed structural model of cytotactin: protein homologies, alternative RNA splicing, and binding regions. Proc Natl Acad Sci USA 86: 19051909.
  • 3
    Erickson H ( 1993) Tenascin-C, tenascin-R and tenascin-X: a family of talented proteins in search of functions. Curr Opin Cell Biol 5: 869876.
  • 4
    Ichijo H, Hellman U, Wernstedt C, Gonez LJ, Claesson-Welsh L, Heldin C-H, Miyazono K ( 1993). Molecular cloning and characterization of ficolin, a multimeric protein with fibrinogen- and collagen-like domains. J Biol Chem 268: 1450514513.
  • 5
    Davis S, Aldrich TH, Jones PF, Acheson A, Compton DL, Jain V, Ryan TE, Bruno J, Radziejewski C, Maisonpierre PC, Yancopoulos GD ( 1996) Isolation of angiopoietin-1, a ligand for the Tie2 receptor, by secretion-trap expression cloning. Cell 87: 11611169.
  • 6
    Koyama T, Hall LR, Haser WG, Tonegawa S, Saito H ( 1987) Structure of a cytotoxic T-lymphocyte-specific gene shows a strong homology to fibrinogen. Proc Natl Acad Sci USA 84: 16091613.
  • 7
    Yamamoto T, Gotoh M, Sasaki H, Terada M, Kitajima M, Hirohashi S ( 1993) Molecular cloning and initial characterization of a novel fibrinogen-related gene, HFREP-1. Biochem Biophys Res Commun 193: 681687.
  • 8
    Kobayashi R, Mizutani A, Hidaka H ( 1994) Isolation and characterization of a 36-kDa microfibril-associated glycoprotein by the newly synthesized isoquinolinesulfonamide affinity chromatography. Biochem Biophys Res Commun 198: 12621266.
  • 9
    Schlosser A, Thomsen T, Moeller JB, Nielsen O, Tornoe I, Mollenhauer J, Moestrup SK, Holmskov U ( 2009) Characterization of FIBCD1 as an acetyl group-binding receptor that binds chitin. J Immunol 183: 38003809.
  • 10
    Baker NE, Mlodzik N, Rubin GM ( 1990) Spacing differentiation in the developing Drosophila eye: a fibrinogen-related lateral inhibitor encoded by scabrous. Science 250: 13701377.
  • 11
    Xu, X, Doolittle RF ( 1990) Presence of a vertebrate fibrinogen-like sequence in an echinoderm. Proc Natl Acad Sci USA 87: 20972101.
  • 12
    Gokudan S, Muta T, Tsuda R, Koori K, Kawahara T, Seki N, Mizunoe Y, Wai S, Iwanaga S, Kawabata S-I ( 1999) Horseshoe crab acetyl group-recognizing lectins involved in innate immunity are structurally related to fibrinogen. Proc Natl Acad Sci USA 96: 10086: 10091.
  • 13
    Adema CM, Hertel LA, Miller RD, Loker ES ( 1997) A family of fibrinogen-related proteins that precipitates parasite-derived molecules is produced by an invertebrate after infection. Proc Natl Acad Sci USA 94: 86918696.
  • 14
    Kurachi S, Song Z, Takagaki M, Yang Q, Winter HC, Kurachi K, Goldstein IJ ( 1998) Sialic acid-binding lectin from the slug Limax flavus. Cloning, expression of the polypeptide, and tissue localization. Eur J Biochem 254: 217222.
  • 15
    Chiquet-Ehrismann R, Tucker RP (in press) Tenascins and the importance of adhesion modulation. Cold Spring Harb Perspect Biol; doi:10.1101.
  • 16
    Fagiani E, Christofori G (in press) Angiopoietins in angiogenesis. Cancer Lett; doi: 10.1016.
  • 17
    Kilpatrick DC, Chalmers JD (in press) Human L-ficolin (ficolin-2) and its clinical significance. J Biomed Biotechnol.
  • 18
    Yee VC, Pratt KP, Cote HCF. LeTrong I, Chung D, Davie EW, Stenkamp RE, Teller DC ( 1997) Crystal structure of a 30 kDa fragment from the gamma chain of human fibrinogen. Structure 5: 125138.
  • 19
    Spraggon G, Everse SJ, Doolittle RF ( 1997) Crystal structures of fragment D from human fibrinogen and its cross-linked counterpart from fibrin. Nature 389: 455462.
  • 20
    Spraggon G, Applegate D, Everse SJ, Zhang JZ, Veerapandian L, Redman C, Doolittle RF, Grieninger G. ( 1998) Crystal structure of a recombinant alphaEC domain from human fibrinogen-420. Proc Natl Acad Sci USA 95: 90999104.
  • 21
    Barton WA, Tzvetkova D, Nikolov DB ( 2005) Structure of the angiopoietin-2 receptor binding domain and identification of surfaces involved in Tie2 recognition. Structure 13: 825832.
  • 22
    Garlatti V, Belloy N, Martin L, Lacroix M, Matsushita M, Endo Y, Fujita T, Fontecilla-Camps JC, Arlaud GJ, Thielens NM, Gaboriaud C ( 2007) Structural insights into the innate immune recognition specificities of L- and H- ficolin. EMBO J 26: 623633.
  • 23
    Tanio M, Kondo S, Sugio S, Kohno T ( 2007) Trivalent recognition unit of innate immunity system: crystal structure of trimeric human M-ficolin fibrinogen-like domain. J Biol Chem 282: 38893895.
  • 24
    Kaires N, Beisel H-G, Fuentes-Prior P, Tsuda R, Muta T, Iwanaga S, Bode W, Huber R, Kawabata S ( 2001) The 2.0-Å crystal structure of tachylectin 5A provides evidence for the common origin of the innate immunity and blood coagulation systems. Proc Natl Acad Sci USA 98: 1351913524.
  • 25
    Doolittle RF ( 2012) The protochordate Ciona intestinalis has a protein like full-length vertebrate fibrinogen. J Inn Immunity 4: 219222.
  • 26
    Nagy A, Hegyi H, Farkas K, Tordai H, Banyai L, Patthy L ( 2008) Identification and correction of abnormal, incomplete and mispredicted proteins in public databases. BMC Bioinform 9: 353.
  • 27
    Letunic L, Doerks T, Bork P ( 2002) SMART 6: recent updates and new developments. Nucleic Acids Res 30: 242244.
  • 28
    Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EC ( 2000) The Pfam protein families database. Nucleic Acids Res 28: 263266.
  • 29
    Wilson D, Madera M, Vogel C, Chothia C, Gough J ( 2007) The superfamily database in 2007: families and functions. Nucleic Acids Res 35: D308D313.
  • 30
    Pradel G, Hayton K, Aravind L, Iyer LM, Abrahamsen MS, Bonawitz A, Meija C, Templeton TJ ( 2004) A multidomain adhesion protein family expressed in Plasmodium falciparum is essential for transmission to the mosquito. J Exp Med 199: 15331544.
  • 31
    Baer ML, Ravel J, Piniero SA, Guether-Borg D, Williams HN ( 2004) Reclassification of salt-water Bdellovibrio sp. As Bacteriovax marinus sp. Nov. and Bacteriovorax marinus sp. Nov. and Bacteriovorax litoralis sp. Nov. Int J Syst Evol Microbiol 54: 10111016.
  • 32
    Dhanabal M, Jeffers M, LaRochelle WJ, Lichenstein HS ( 2005) Angioarrestin: a unique angiopoietin-related protein with anti-angiogenic properties. Biochem Biophys Res Commun 333: 308315.
  • 33
    Tucker RP, Drabikowski K, Hess JF, Ferralli J, Chiquet-Ehrismann R, Adams JC ( 2006) Phylogenetic analysis of tenascin gene family: evidence of origin in the chordate lineage. BMC Evol Biol 6: 117.
  • 34
    Pham VN, Roman BL, Weinstein BM ( 2001) Isolation and expression analysis of three zebrafish angiopoietin genes. Dev Dynam 221: 407474.
  • 35
    Thomsen T, Moeller JB, Schlosser A, Sorenson GL, Moestrup SK, Palaniyar N, Wallis R, Mollenhauer J, Holmskov U ( 2010) The recognition unit of FIBCD1 organizes into a noncovalently linked tetrameric structure and uses a hydrophobic funnel (S1) for acetyl group recognition. J Biol Chem 285: 12291238.
  • 36
    Pan Y, Doolittle RF ( 1992) cDNA sequences of a second fibrinogen α chain in lamprey: an archetypal version alignable with full-length β and γ chains. Proc Natl Acad Sci USA 89: 20662070.
  • 37
    Fu Y, Weissbach L, Plant PW, Oddoux C, Cao Y, Liang J, Roy SN, Redman CM, Greininger G ( 1992) Carboxy-terminal-extended variant of the human fibrinogen α subunit: a novel exon conferring marked homology to β and γ subunits. Biochemistry 31: 1196811972.
  • 38
    Fan C, Zhang S, Li L, Chou Y ( 2008) Fibrinogen-related protein from amphioxus Branchiostoma belcheri is a multivalent pattern recognition receptor with a bacteriolyitc activity. Mol Immunol 45: 33383346.
  • 39
    Tucker RP, Chiquet-Ehrismann R ( 2009) Evidence for the evolution of tenascin and fibronectin early in the chordate lineage. Int J Biochem Cell Biol 41: 424434.
  • 40
    Kenjo A, Takahashi M, Matsushita M, Endo Y, Nakata M, Mizuochi, T, Fujita T ( 2001) Cloning and characterization of novel ficolins from the solitary ascidian Halocynthia roretzi. J Biol Chem 276: 1995919965.
  • 41
    Harada Y, Takagaki Y, Sunagawa M, Saito T, Yamada Y, Taniguchi H, Shoguchi E, Sawada H ( 2008) Mechanism of self-sterility in a hermaphroditic chordate. Science 320: 548550.
  • 42
    Vacquier VD, Swanson WJ ( 2011) Selection in the rapid evolution of gamete recognition proteins in marine invertebrates. Cold Spring Harb Perspect Biol 3: a002931.
  • 43
    Miwata K, Chiba T, Horii R, Yamada L, Kubo A. Miyamura D, Satoh N, Satou Y ( 2006) Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Dev Biol 292: 546554.
  • 44
    Zhang SM, Adema CM, Kepler TB, Loker ES ( 2004) Diversification of Ig superfamily genes in an invertebrate. Science 305: 251254.
  • 45
    Leonard PM, Adema CM, Zhang S-M, Loker ES ( 2001) Structure of two FREP genes that combine IgSF and fibrinogen domains, with comments on diversity of the FREP gene family in the snail Biomphalaria glabrata. Gene 269: 155165.
  • 46
    Zhang S-M, Nian H, Zeng Y, de Jong RJ ( 2008) Fibrinogen-bearing protein genes in the snail Biomphalaria glabrata: characterization of two novel genes and expression studies during ontogenesis and trematode infection. Dev Comp Immunol 32: 11191130.
  • 47
    Cirimotich CM, Dong Y, Garver LS, Sim S, Dimopoulos G ( 2010) Mosquito immune defenses against Plasmodium infection. Dev Comp Immunol 34: 387395.
  • 48
    Dong Y, Dimopoulos G ( 2009) Anopheles fibrinogen-related proteins provide expanded pattern recognition capacity against bacteria and malaria parasites. J Biol Chem 284: 98359844.
  • 49
    Wang X, Zhao Q, Christensen BM ( 2005) Identification and characterization of the fibrinogen-like domain of fibrinogen-related proteins in the mosquito, Anopheles gambiae, and the fruitfly, Drosophila melanogaster, genomes. BMC Genomics 6: 114.
  • 50
    Middha S, Wang X ( 2008) Evolution and potential function of fibrinogen-like domains across twelve Drosophila species. BMC Genomics 9: 260.
  • 51
    Lee E-C, Hu X, Yu S-Y, Baker NE ( 1996) The scabrous gene encodes a secreted glycoprotein dimer and regulates proneural development in Drosophila eyes. Mol Cell Biol 16: 11791188.
  • 52
    Perovic-Ottstadt S, Adell T, Proksch P, Wiens M. Korzhev M, Gamulin V, Muller IM, Muller WEG ( 2001) A (1->3)-???-D-glucan recognition protein from the sponge Suberites domuncula. Eur J Biochem 271: 19241937.
  • 53
    Knibbs RN, Osborne SE, Glick GD, Goldstein IJ ( 1993) Binding determinants of the sialic acid-specific lectin from the slug Limax flavus. J Biol Chem 268: 1852418531.
  • 54
    Sekine H, Kanjo A, Azumi K, Chi G, Takahashi M, Kasukawa R, Ichikawa N, Nakata M, Mizuochi T, Matsushita M, Endo Y, Fujita T ( 2001) An ancient lectin-dependent complement system in an ascidian: novel lectin isolated from the plasma of the solitary ascidian, Halocynthia roretzi. J. Immunol 167: 45044510.
  • 55
    Krarup A, Thiel S, Hansen A, Fujita T, Jensenius JC ( 2004) L-ficolin is a pattern recognition molecule specific for acetyl groups. J Biol Chem 279: 4751347519.
  • 56
    Gout E, Garlatti V, Smith DF, Lacroix M, Dumestre-Perard C, Lunardi T, Martin L, Cesbron J-Y, Arlaud GJ, Gaboriaud C, Thielens NM ( 2010) Carbohydrate recognition properties of human ficolins. Glycan array screening reveals the sialic acid binding specificity. J Biol Chem 285: 66126622.
  • 57
    Garlatti V, Martin L, Lacroix M, Gout E, Arlaud GJ, Thielens NM, Gaboriaud C ( 2010) Structural insights into the recognition properties of human ficolins. J Inn Immunity 2: 1723.
  • 58
    Schnapp LM, Hatch N, Ramos DM, Klimanskaya IV, Sheppard D, Pytela R ( 1995) The human integrin α8β1 functions as a receptor for tenascin, fibronectin and vitronectin. J Biol Chem 270: 2319623202.
  • 59
    Schumacher S, Jung M, Norenberg U, Dorner A, Chiquet-Ehrismann R, Stuermer CA, Rathjen FG ( 2001) CALEB binds via its acidic stretch to the fibrinogen-like domain of tenascin-C or tenascin-R and its expression is dynamically regulated after optic nerve lesion. J Biol Chem 276: 73377345.
  • 60
    Barton WA, Tzvetkova D, Miranda EP, Kolev MV, Rajashankar KR, Himanen JP, Nikolov DB ( 2006) Crystal structures of the Tie2 receptor ectodomain and the angiopoietin-2-Tie2 complex. Nature Struct Mol Biol 13: 524532.
  • 61
    King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, Fairclough S, Hellsten U, Isogai Y, Letunic I, Marr M, Pincus D, Putnam N, Rokas A, Wright KJ, Zuzow R, Dirks W, Good M, Goodstein D, Lemons D, Li W, Lyons JB, Morris A, Nichols S, Richter DJ, Salamov A, Sequencing JG, Bork P, Lim WA, Manning G, Miller WT, McGinnis W, Shapiro H, Tjian R, Grigoriev IV, Rokhsar D ( 2008) The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 451: 783788.
  • 62
    Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS ( 2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466: 720726.
  • 63
    Kawabata S, Iwanaga S ( 1999) Role of lectins in the innate immunity of horseshoe crab. Dev Comp Immunol 23: 391400.
  • 64
    Hanington P, Zhang S-M ( 2011) The primary role of fibrinogen-related proteins in invertebrates is defense, not coagulation. J Inn Immunity 3: 1727.
  • 65
    Matsushita M, Endo Y, Hamasaki N, Fujita T ( 2001) Activation of the lectin complement pathway by ficolins. Intern Immunopharm 1: 359363.
  • 66
    Altschul SF, Madden TL, Schaffer AA, Zhang J, Miller W. Zhang Z, Miller DJ ( 1997) Gapped-BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • 67
    Feng D-F. Doolittle RF ( 1996) Progressive alignment of amino acid sequences and construction of phylogenetic trees from them. Math Enzymol 266: 368382.
  • 68
    DeLano WL ( 2009) The PyMOL molecular graphics system. Palo Alto, CA: Delano Scientific LLC.