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References

  • 1
    Ladurner A, Itzhaki L, Gay G, Fersht A ( 1997) Complementation of peptide fragments of the single domain protein chymotrypsin inhibitor 2. J Mol Biol 273: 317329.
  • 2
    Zitzewitz J, Gualfetti P, Perkons I, Wasta S, Matthews C ( 1999) Identifying the structural boundaries of independent folding domains in the α subunit of tryptophan synthase, a β/α barrel protein. Protein Sci 8: 12001209.
  • 3
    Hayes F, Hallet B, Cao YH ( 1997) Insertion mutagenesis as a tool in the modification of protein function. J Biol Chem 272: 2883328836.
  • 4
    Voigt CA, Martinez C, Wang ZG, Mayo SL, Arnold FH ( 2002) Protein building blocks preserved by recombination. Nat Struct Biol 9: 553558.
  • 5
    Hopfner KP, Kopetzki E, Kresse GB, Bode W, Huber R, Engh RA ( 1998) New enzyme lineages by subdomain shuffling. Proc Natl Acad Sci USA 95: 98139818.
  • 6
    Tsuji T, Onimaru M, Yanagawa H ( 2006) Towards the creation of novel proteins by block shuffling. Comb Chem High Throughput Screening 9: 259269.
  • 7
    Seitz T, Bocola M, Claren J, Sterner R ( 2007) Stabillsation of a (βα)8-barrel protein designed from ldentical half barrels. J Mol Biol 372: 114129.
  • 8
    Pelletier JN, Campbell-Valois FX, Michnick SW ( 1998) Oligomerization domain-directed reassembly of active dihydrofolate reductase from rationally designed fragments. Proc Natl Acad Sci USA 95: 1214112146.
  • 9
    Galarneau A, Primeau M, Trudeau LE, Michnick SW ( 2002) β-Lactamase protein fragment complementation assays as in vivo and in vitro sensors of protein-protein interactions. Nat Biotechnol 20: 619622.
  • 10
    Hiraga K, Yamagishi A, Oshima T ( 2004) Mapping of unit boundaries of a protein: exhaustive search for permissive sites for duplication by complementation analysis of random fragment libraries of tryptophan synthase α subunit. J Mol Biol 335: 10931104.
  • 11
    Paschon DE, Patel ZS, Ostermeier M ( 2005) Enhanced catalytic efficiency of aminoglycoside phosphotransferase (3′)-IIa achieved through protein fragmentation and reassembly. J Mol Biol 353: 2637.
  • 12
    Dyson MR, Perera RL, Shadbolt SP, Biderman L, Bromek K, Murzina NV, McCafferty J ( 2008) Identification of soluble protein fragments by gene fragmentation and genetic selection. Nucleic Acids Res 36: e51.
  • 13
    Higgins W, Fairwell T, Miles EW ( 1979) An active proteolytic derivative of the α subunit of tryptophan synthase. Identification of the site of cleavage and characterization of the fragments. Biochemistry 18: 48274835.
  • 14
    Li AQ, Sowder RC, Henderson LE, Moore SP, Garfinkel DJ, Fisher RJ ( 2001) Chemical cleavage at aspartyl residues for protein identification. Anal Chem 73: 53955402.
  • 15
    Kawasaki M, Inagaki F ( 2001) Random PCR-based screening for soluble domains using green fluorescent protein. Biochem Biophys Res Commun 280: 842844.
  • 16
    Reich S, Puckey LH, Cheetham CL, Harris R, Ali AAE, Bhattacharyya U, Maclagan K, Powell KA, Prodromou C, Pearl LH, Driscoll PC, Sawa R ( 2006) Combinatorial domain hunting: an effective approach for the identification of soluble protein domains adaptable to high-throughput applications. Protein Sci 15: 23562365.
  • 17
    Cochrane D, Webster C, Masih G, McCafferty J ( 2000) Identification of natural ligands for SH2 domains from a phage display cDNA library. J Mol Biol 297: 8997.
  • 18
    Prodromou C, Sawa R, Driscoll PC ( 2007) DNA fragmentation-based combinatorial approaches to soluble protein expression. I. Generating DNA fragment libraries. Drug Discov Today 12: 931938.
  • 19
    Li S, Cai Z, Chen Y, Lin ZL ( 2006) Dissection of SARS coronavirus spike protein into discrete folded fragments. Tsinghua Sci Technol 11: 4953.
  • 20
    Lin ZL, Li S, Chen Y, Identification of viral peptide fragments for vaccine development. In: HicksBW, Ed. (in press) Methods in molecular biology series: viral applications of the green fluorescent protein.
  • 21
    Maxwell KL, Mittermaier AK, Forman-Kay JD, Davidson AR ( 1999) A simple in vivo assay for increased protein solubility. Protein Sci 8: 19081911.
  • 22
    Sieber V, Martinez C, Arnold F ( 2001) Libraries of hybrid proteins from distantly related sequences. Nat Biotechnol 19: 456460.
  • 23
    Marsden RL, McGuffin LJ, Jones DT ( 2002) Rapid protein domain assignment from amino acid sequence using predicted secondary structure. Protein Sci 11: 28142824.
  • 24
    Wehrman T, Kleaveland B, Her JH, Balint RF, Blau HM ( 2002) Protein–protein interactions monitored in mammalian cells via complementation of β-lactamase enzyme fragments. Proc Natl Acad Sci USA 99: 34693474.
  • 25
    Michnick SW, Ear PH, Manderson EN, Remy I, Stefan E ( 2007). Universal strategies in research and drug discovery based on protein-fragment complementation assays. Nat Rev Drug Discov 6: 569582.
  • 26
    Tafelmeyer P, Johnsson N, Johnsson K ( 2004) Transforming a (β/α)8-barrel enzyme into a split-protein sensor through directed evolution. Chem Biol 11: 681689.
  • 27
    Ghosh I, Hamilton AD, Regan L ( 2000) Antiparallel leucine zipper-directed protein reassembly: Application to the green fluorescent protein. J Am Chem Soc 122: 56585659.
  • 28
    Jelsch C, Mourey L, Masson JM, Samama JP ( 1993) Crystal structure of Escherichia coli TEM1 β-lactamase at 1.8 Å resolution. Proteins: Struct Funct Bioinf 16: 364383.
  • 29
    Hiraga K, Arnold FH ( 2003) General method for sequence-independent site-directed chimeragenesis. J Mol Biol 330: 287296.
  • 30
    Meyer MM, Hochrein L, Arnold FH ( 2006) Structure-guided SCHEMA recombination of distantly related β-lactamases. Protein Eng Des Sel 19: 563570.
  • 31
    Michnick SW, Remy I, Campbell-Valois FX, Vallee-Belisle A, Pelletier JN ( 2000) Detection of protein-protein interactions by protein fragment complementation strategies. Methods Enzymol 328: 208230.
  • 32
    Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, Arnold FH ( 2003) Library analysis of SCHEMA-guided protein recombination. Protein Sci 12: 16861693.
  • 33
    Nurizzo D, Shewry SC, Perlin MH, Brown SA, Dholakia JN, Fuchs RL, Deva T, Baker EN, Smith CA ( 2003) The crystal structure of aminoglycoside-3′-phospho-transferase-IIa, an enzyme responsible for antibiotic resistance. J Mol Biol 327: 491506.
  • 34
    Stagljar I, Korostensky C, Johnsson N, te Heesen S ( 1998) A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo. Proc Natl Acad Sci USA 95: 51875192.
  • 35
    Taniuchi H, Anfinsen CB ( 1971) Simultaneous formation of two alternative enzymology active structures by complementation of two overlapping fragments of staphylococcal nuclease. J Biol Chem 246: 22912301.
  • 36
    RR, Taniuchi H ( 1977) Formation of a biologically active, ordered complex from two overlapping fragments of cytochrome c. J Biol Chem 252: 13671374.
  • 37
    Matsuyama S, Kimura E, Mizushima S ( 1990) Complementation of two overlapping fragments of SecA, a protein translocation ATPase of Escherichia coli, allows ATP binding to its amino-terminal region. J Biol Chem 265: 87608765.
  • 38
    Ostermeier M, Nixon AE, Shim JH, Benkovic SJ ( 1999) Combinatorial protein engineering by incremental truncation. Proc Natl Acad Sci USA 96: 35623567.
  • 39
    Lorimer I, Pastan I ( 1995) Random recombination of antibody single-china FV sequences after fragmentation with DNase I in the presence of Mn2+. Nucleic Acids Res 23: 30673068.
  • 40
    Bauer DC, Boden M, Thier R, Gillam EM ( 2006) STAR: predicting recombination sites from amino acid sequence. BMC Bioinf 7: 437.
  • 41
    Graf R, Schachman HK ( 1996) Random circular permutation of genes and expressed polypeptide chains: application of the method to the catalytic chains of aspartate transcarbamoylase. Proc Natl Acad Sci USA 93: 1159111596.