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References

  • 1
    Locksley RM, Killeen N, Lenardo MJ ( 2001) The TNF and TNF receptor superfamilies: integrating mammalian biology. Cell 104: 487501.
  • 2
    Bodmer JL, Schneider P, Tschopp J ( 2002) The molecular architecture of the TNF superfamily. Trends Biochem Sci 27: 1926.
  • 3
    Chicheportiche Y, Bourdon PR, Xu H, Hsu YM, Scott H, Hession C, Garcia I, Browning JL ( 1997) TWEAK, a new secreted ligand in the tumor necrosis factor family that weakly induces apoptosis. J Biol Chem 272: 3240132410.
  • 4
    Marsters SA, Sheridan JP, Pitti RM, Brush J, Goddard A, Ashkenazi A ( 1998) Identification of a ligand for the death-domain-containing receptor Apo3. Curr Biol 8: 525528.
  • 5
    Meighan-Mantha RL, Hsu DK, Guo Y, Brown SA, Feng SL, Peifley KA, Alberts GF, Copeland NG, Gilbert DJ, Jenkins NA, Richards CM, Winkles JA ( 1999) The mitogen-inducible Fn14 gene encodes a type I transmembrane protein that modulates fibroblast adhesion and migration. J Biol Chem 274: 3316633176.
  • 6
    Feng SL, Guo Y, Factor VM, Thorgeirsson SS, Bell DW, Testa JR, Peifley KA, Winkles JA ( 2000) The Fn14 immediate-early response gene is induced during liver regeneration and highly expressed in both human and murine hepatocellular carcinomas. Am J Pathol 156: 12531261.
  • 7
    Wiley SR, Cassiano L, Lofton T, Davis-Smith T, Winkles JA, Lindner V, Liu H, Daniel TO, Smith CA, Fanslow WC ( 2001) A novel TNF receptor family member binds TWEAK and is implicated in angiogenesis. Immunity 15: 837846.
  • 8
    Brown SA, Hanscom HN, Vu H, Brew SA, Winkles JA ( 2006) TWEAK binding to the Fn14 cysteine-rich domain depends on charged residues located in both the A1 and D2 modules. Biochem J 397: 297304.
  • 9
    Wiley SR, Winkles JA ( 2003) TWEAK, a member of the TNF superfamily, is a multifunctional cytokine that binds the TweakR/Fn14 receptor. Cytokine Growth Factor Rev 14: 241249.
  • 10
    Winkles JA, Tran NL, Berens ME ( 2006) TWEAK and Fn14: new molecular targets for cancer therapy? Cancer Lett 235: 1117.
  • 11
    Burkly LC, Michaelson JS, Hahm K, Jakubowski A, Zheng TS ( 2007) TWEAKing tissue remodeling by a multifunctional cytokine: role of TWEAK/Fn14 pathway in health and disease. Cytokine 40: 116.
  • 12
    Winkles JA ( 2008) The TWEAK-Fn14 cytokine-receptor axis: discovery, biology and therapeutic targeting. Nat Rev Drug Discov 7: 411425.
  • 13
    Zheng TS, Burkly LC ( 2008) No end in site: TWEAK/Fn14 activation and autoimmunity associated- end-organ pathologies. J Leukoc Biol 84: 338347.
  • 14
    Naismith JH, Sprang SR ( 1998) Modularity in the TNF-receptor family. Trends Biochem Sci 23: 7479.
  • 15
    Liu Y, Hong X, Kappler J, Jiang L, Zhang R, Xu L, Pan CH, Martin WE, Murphy RC, Shu HB, Dai S, Zhang G ( 2003) Ligand-receptor binding revealed by the TNF family member TALL-1. Nature 423: 4956.
  • 16
    Gouet P, Courcelle E, Stuart DI, Metoz F ( 1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15: 305308.
  • 17
    Foley SF, Sun Y, Zheng TS, Wen D ( 2008) Picomole-level mapping of protein disulfides by mass spectrometry following partial reduction and alkylation. Anal Biochem 377: 95104.
  • 18
    Zhang G ( 2004) Tumor necrosis factor family ligand-receptor binding. Curr Opin Struct Biol 14: 154160.
  • 19
    Banner DW, D'Arcy A, Janes W, Gentz R, Schoenfeld HJ, Broger C, Loetscher H, Lesslauer W ( 1993) Crystal structure of the soluble human 55 kd TNF receptor-human TNF beta complex: implications for TNF receptor activation. Cell 73: 431445.
  • 20
    Mongkolsapaya J, Grimes JM, Chen N, Xu XN, Stuart DI, Jones EY, Screaton GR ( 1999) Structure of the TRAIL-DR5 complex reveals mechanisms conferring specificity in apoptotic initiation. Nat Struct Biol 6: 10481053.
  • 21
    Kim HM, Yu KS, Lee ME, Shin DR, Kim YS, Paik SG, Yoo OJ, Lee H, Lee JO ( 2003) Crystal structure of the BAFF-BAFF-R complex and its implications for receptor activation. Nat Struct Biol 10: 342348.
  • 22
    Hymowitz SG, Patel DR, Wallweber HJ, Runyon S, Yan M, Yin J, Shriver SK, Gordon NC, Pan B, Skelton NJ, Kelley RF, Starovasnik MA ( 2005) Structures of APRIL-receptor complexes: like BCMA, TACI employs only a single cysteine-rich domain for high affinity ligand binding. J Biol Chem 280: 72187227.
  • 23
    Schubert M, Labudde D, Oschkinat H, Schmieder P ( 2002) A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics. J Biomol NMR 24: 149154.
  • 24
    Wüthrich, K ( 1986) NMR of Proteins and Nucleic Acids. New York: Wiley.
  • 25
    Güntert P ( 2004) Automated NMR structure calculation with CYANA. Methods Mol Biol 278: 353378.
  • 26
    Sharma D, Rajarathnam K ( 2000) 13C NMR chemical shifts can predict disulfide bond formation. J Biomol NMR 18: 165171.
  • 27
    Laskowski RA, Rullmann JA, MacArthur MW, Kaptein R, Thornton JM ( 1996) AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR 8: 477486.
  • 28
    Naismith JH, Devine TQ, Kohno T, Sprang SR ( 1996) Structures of the extracellular domain of the type I tumor necrosis factor receptor. Structure 4: 12511262.
  • 29
    Kigawa T, Yabuki T, Matsuda N, Matsuda T, Nakajima R, Tanaka A, Yokoyama S ( 2004) Preparation of Escherichia coli cell extract for highly productive cell-free protein expression. J Struct Funct Genomics 5: 6368.
  • 30
    Matsuda T, Koshiba S, Tochio N, Seki E, Iwasaki N, Yabuki T, Inoue M, Yokoyama S, Kigawa T ( 2007) Improving cell-free protein synthesis for stable-isotope labeling. J Biomol NMR 37: 225229.
  • 31
    Yabuki T, Motoda Y, Hanada K, Nunokawa E, Saito M, Seki E, Inoue M, Kigawa T, Yokoyama S ( 2007) A robust two-step PCR method of template DNA production for high-throughput cell-free protein synthesis. J Struct Funct Genomics 8: 173191.
  • 32
    Clore GM, Gronenborn AM ( 1998) New methods of structure refinement for macromolecular structure determination by NMR. Proc Natl Acad Sci USA 95: 58915898.
  • 33
    Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A ( 1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6: 277293.
  • 34
    Johnson BA, Blevins RA ( 1994) NMR View: a computer program for the visualization and analysis of NMR data. J Biomol NMR 4: 603614.
  • 35
    Kobayashi N, Iwahara J, Koshiba S, Tomizawa T, Tochio N, Güntert P, Kigawa T, Yokoyama S ( 2007) KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies. J Biomol NMR 39: 3152.
  • 36
    Herrmann T, Güntert P, Wüthrich K ( 2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol 319: 209227.
  • 37
    Güntert P, Mumenthaler C, Wüthrich K ( 1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 273: 283298.
  • 38
    Cornilescu G, Delaglio F, Bax A ( 1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 13: 289302.
  • 39
    Koradi R, Billeter M, Wüthrich K ( 1996) MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graphics 14: 5155, 29–32.