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Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas
Article first published online: 11 JAN 2009
DOI: 10.1002/pro.53
Copyright © 2009 The Protein Society
Additional Information
How to Cite
Olia, A. S., Casjens, S. and Cingolani, G. (2009), Structural plasticity of the phage P22 tail needle gp26 probed with xenon gas. Protein Science, 18: 537–548. doi: 10.1002/pro.53
Publication History
- Issue published online: 23 FEB 2009
- Article first published online: 11 JAN 2009
- Accepted manuscript online: 11 JAN 2009 12:00AM EST
- Manuscript Accepted: 1 DEC 2008
- Manuscript Revised: 25 NOV 2008
- Manuscript Received: 3 OCT 2008
Funded by
- NIH. Grant Number: 1R56AI076509-01A1
References
- 1( 2003) Bacteriophage observations and evolution. Res Microbiol 154: 245–251.
- 2, , , , ( 2005) Three-dimensional structure of the bacteriophage P22 tail machine. EMBO J 24: 2087.
- 3, , , , , ( 2004) Molecular architecture of the prolate head of bacteriophage T4. Proc Natl Acad Sci USA 101: 6003–6008.
- 4, , , , ( 2004) Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host. Cell 118: 419–429.
- 5( 2001) No syringes please, ejection of phage T7 DNA from the virion is enzyme driven. Mol Microbiol 40: 1–8.Direct Link:
- 6, , , , ( 1988) Purification and organization of the gene 1 portal protein required for phage P22 DNA packaging. Biochemistry 27: 1849–1856.
- 7, ( 1982) Trimeric intermediate in the in vivo folding and subunit assembly of the tail spike endorhamnosidase of bacteriophage P22. Proc Natl Acad Sci USA 79: 3403–3407.
- 8, , , , ( 2006) Cryo-EM Asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery. Structure 14: 1073–1082.
- 9, , , , , , , , ( 2006) The structure of an infectious p22 virion shows the signal for headful DNA packaging. Science 312: 1791–1795
- 10, , , , , ( 2006) Binding-induced stabilization and assembly of the phage P22 tail accessory factor gp4. J Mol Biol 363: 558–576.
- 11, , , , ( 2007) Role of gene 10 protein in the hierarchical assembly of the bacteriophage P22 portal vertex structure. Biochemistry 46: 8776–8784.
- 12, ( 2004) Peptidoglycan hydrolytic activities associated with bacteriophage virions. Mol Microbiol 51: 1169.Direct Link:
- 13, , , , , , ( 2005) Bacteriophage P22 tail accessory factor GP26 is a long triple-stranded coiled-coil. J Biol Chem 280: 5929–5933.
- 14, , (in press). Structure of phage P22 cell envelope-penetrating needle. Nat Struct Mol Biol.
- 15, ( 1984) Steps in the stabilization of newly packaged DNA during phage P22 morphogenesis. J Mol Biol 172: 523–543.
- 16( 1977) E proteins of bacteriophage P22. I. Identification and ejection from wild-type and defective particles. J Virol 23: 91–97.
- 17, , , ( 2007) Domain organization and polarity of tail needle GP26 in the portal vertex structure of bacteriophage P22. J Mol Biol 371: 374–387.
- 18, , , ( 2008) Foldon-guided self-assembly of ultra-stable protein fibers. Protein Sci 17: 1475–1485.Direct Link:
- 19, , ( 2006) Crystallogenesis of bacteriophage P22 tail accessory factor gp26 at acidic and neutral pH. Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 477–482.Direct Link:
- 20, , Processing of X-ray diffraction Data Collected in Oscillation Mode. In: CarterJCW, SweetRM, Eds. ( 1997) macromolecular crystallography, part A. New York: Academic Press, pp 307–326.
- 21Collaborative Computational Project, Number 4 ( 1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50: 760–763.Direct Link:
- 22, , , , , ( 2007) Phaser crystallographic software. J Appl Crystallogr 40 :658–674.Direct Link:
- 23, , ( 1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53: 240–255.Direct Link:
- 24, ( 2005) The Yin and Yang of protein folding. FEBS J 272: 5962–5970.Direct Link:
- 25, ( 1994) Detection, delineation, measurement and display of cavities in macromolecular structures. Acta Crystallogr D Biol Crystallogr 50: 178–185.Direct Link:
- 26, , , , , , ( 2004) UCSF Chimera–a visualization system for exploratory research and analysis. J Comput Chem 25: 1605–1612.Direct Link:
- 27, , , , , , , , , , , , ( 2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947–2948.
- 28, , , ( 2004) The Jalview Java alignment editor. Bioinformatics 20: 426–427.
- 29( 2003) Introduction to twinning. Acta Crystallogr D Biol Crystallogr 59: 1995–2003.Direct Link:
- 30, , , , , , ( 2005) The first crystal structure of a macromolecular assembly under high pressure: CpMV at 330 MPa. Biophys J 88: 3562–3571.
- 31, , , , ( 2002) Detection and characterization of xenon-binding sites in proteins by 129Xe NMR spectroscopy. J Mol Biol 322: 425–440.
- 32, , , , , , , , , ( 2004) Using xenon as a probe for dioxygen-binding sites in copper amine oxidases. J Mol Biol 344: 599–607.
- 33, , , , ( 2004) Structural dynamics controls nitric oxide affinity in nitrophorin 4. J Biol Chem 279: 39401–39407.
- 34, , , , , , , , , , , ( 2007) Protein crystallography under xenon and nitrous oxide pressure: comparison with in vivo pharmacology studies and implications for the mechanism of inhaled anesthetic action. Biophys J 92: 217–224.
- 35, , ( 1996) Retrovirus envelope domain at 1.7 angstrom resolution. Nat Struct Biol 3: 465–469.
- 36, , , , ( 2005) Central ions and lateral asparagine/glutamine zippers stabilize the post-fusion hairpin conformation of the SARS coronavirus spike glycoprotein. Virology 335: 276–285.
- 37, CRC handbook of chemistry and physics. In: WeastRC, Ed ( 1989)1st Student Edition.Medical physics. Boca Raton, FL: CRC Press Inc. Vol. 16, pp 145–145.
- 38, , , , ( 1996) The crystal structure of a five-stranded coiled coil in COMP: a prototype ion channel?. Science 274: 761–765.
- 39( 2002) Metal-ligand geometry relevant to proteins and in proteins: sodium and potassium. Acta Crystallogr D Biol Crystallogr 58: 872–874.Direct Link:
- 40, , , , , , ( 2006) Escherichia coli acid resistance: pH-sensing, activation by chloride and autoinhibition in GadB. EMBO J 25: 2643–2651.
- 41, , , , ( 2008) Xenon in and at the end of the tunnel of bifunctional carbon monoxide dehydrogenase/ acetyl-CoA synthase. Biochemistry 47: 3474–3483.
- 42( 1974) The interpretation of protein structures: total volume, group volume distributions and packing density. J Mol Biol 82: 1–14.
- 43, , , , , , ( 2005) Structure-based engineering of internal cavities in coiled-coil peptides. Biochemistry 44: 9723–9732.
- 44, ( 2004) Designing proteins from the inside out. Proteins 56: 1–10.Direct Link:
- 45, , , , , , ( 1992) Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science 255: 178–183.
- 46, ( 1992) Mutational analysis of protein stability. Curr Opin Struct Biol 2: 46–51.
- 47, ( 1983) Ion-pairs in proteins. J Mol Biol 168: 867–885.
- 48, ( 1984) On the environment of ionizable groups in globular proteins. J Mol Biol 173: 515–521.
- 49, ( 1998) A buried polar interaction can direct the relative orientation of helices in a coiled coil. Biochemistry 37: 12603–12610.
- 50, ( 1995) A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil. Biochemistry 34: 8642–8648.
- 51, ( 1998) Structural characterisation of apoflavodoxin shows that the location of the stable nucleus differs among proteins with a flavodoxin-like topology. J Mol Biol 282: 653–666.
- 52, ( 1997) Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange. Biochemistry 36: 2278–2290.
- 53, , , , , , , ( 2007) Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection. EMBO J 26: 3720–3728.
- 54
- 55, , , , , , ( 2003) Flexibility of the adenovirus fiber is required for efficient receptor interaction. J Virol 77: 7225–7235.