Protein Structure Report

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Crystal structure of AFV1-102, a protein from the acidianus filamentous virus 1

  1. Jenny Keller1,
  2. Nicolas Leulliot1,
  3. Bruno Collinet1,
  4. Valerie Campanacci2,
  5. Christian Cambillau2,
  6. David Pranghisvilli3,
  7. Herman van Tilbeurgh1,*

Article first published online: 10 FEB 2009

DOI: 10.1002/pro.79

Issue

Protein Science

Protein Science

Volume 18, Issue 4, pages 845–849, April 2009

Additional Information

How to Cite

Keller, J., Leulliot, N., Collinet, B., Campanacci, V., Cambillau, C., Pranghisvilli, D. and Tilbeurgh, H. v. (2009), Crystal structure of AFV1-102, a protein from the acidianus filamentous virus 1. Protein Science, 18: 845–849. doi: 10.1002/pro.79

Author Information

  1. 1

    Institut de Biochimie et de Biophysique Moléculaire et Cellulaire, Université Paris-Sud, IFR115, UMR8619-CNRS, 91405 Orsay, France

  2. 2

    Architecture et Fonction des Macromolécules Biologiques, CNRS and Universités d'Aix-Marseille I & II, UMR 6098, Case 932, 163 avenue de Luminy, 13288 Marseille cedex 9, France

  3. 3

    Institut Pasteur, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, 25 rue du Dr Roux, 75724 Paris Cedex 15, France

*Institut de Biochimie et de Biophysique Moléculaire et Cellulaire, Université Paris-Sud, IFR115, UMR8619-CNRS, 91405 Orsay, France

Publication History

  1. Issue published online: 25 MAR 2009
  2. Article first published online: 10 FEB 2009
  3. Accepted manuscript online: 10 FEB 2009 12:00AM EST
  4. Manuscript Accepted: 24 NOV 2008
  5. Manuscript Revised: 18 NOV 2008
  6. Manuscript Received: 6 NOV 2008

Funded by

  • Agence Nationale dela Recherche. Grant Number: NT05-2_41674

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References

  • 1
    Ortmann AC, Wiedenheft B, Douglas T, Young M ( 2006) Hot Crenarchaeal viruses reveal deep evolutionary connections. Nat Rev Microbiol 4: 520–528.
  • 2
    Prangishvili D, Garrett RA ( 2005) Viruses of hyperthermophilic Crenarchaea. Trends Microbiol 13: 535–542.
  • 3
    Prangishvili D, Forterre P, Garrett RA ( 2006) Viruses of the Archaea: a unifying view. Nat Rev Microbiol 4: 837–848.
  • 4
    Prangishvili D, Garrett RA, Koonin EV ( 2006) Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res 117: 52–67.
  • 5
    Prangishvili D, Klenk HP, Jakobs G, Schmiechen A, Hanselmann C, Holz I, Zillig W ( 1998) Biochemical and phylogenetic characterization of the dUTPase from the archaeal virus SIRV. J Biol Chem 273: 6024–6029.
  • 6
    Janekovic D, Wunderl S, Holz I, Zillig W, Gierl A, Neumann H ( 1983) TTV1, TTV2 and TTV3, a family of viruses of the extremely thermophilic, anaerobic sulfur reducing archaebacterium Thermoproteus tenax. Mol Gen Genet 192: 39–45.
  • 7
    Bettstetter M, Peng X, Garrett RA, Prangishvili D ( 2003) AFV1, a novel virus infecting hyperthermophilic archaea of the genus acidianus. Virology 315: 68–79.
  • 8
    Vestergaard G, Aramayo R, Basta T, Haring M, Peng X, Brugger K, Chen L, Rachel R, Boisset N, Garrett RA, Prangishvili D ( 2008) Structure of the acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses. J Virol 82: 371–381.
  • 9
    Schleper C, Kubo K, Zillig W ( 1992) The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: demonstration of infectivity and of transfection with viral DNA. Proc Natl Acad Sci USA 89: 7645–7649.
  • 10
    Stedman KM, She Q, Phan H, Arnold HP, Holz I, Garrett RA, Zillig W ( 2003) Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2. Res Microbiol 154: 295–302.
  • 11
    Wiedenheft B, Stedman K, Roberto F, Willits D, Gleske AK, Zoeller L, Snyder J, Douglas T, Young M ( 2004) Comparative genomic analysis of hyperthermophilic archaeal Fuselloviridae viruses. J Virol 78: 1954–1961.
  • 12
    Arnold HP, Ziese U, Zillig W ( 2000) SNDV, a novel virus of the extremely thermophilic and acidophilic archaeon Sulfolobus. Virology 272: 409–416.
  • 13
    Haring M, Peng X, Brugger K, Rachel R, Stetter KO, Garrett RA, Prangishvili D ( 2004) Morphology and genome organization of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: a novel virus family, the Globuloviridae. Virology 323: 233–242.
  • 14
    Ahn DG, Peng X, Brugger K, Rachel R, Stetter ICC, Garrett RA, Prangishvili D ( 2006) TTSV1, a new virus-like particle isolated from the hyperthermophilic crenarchaeote Thermoproteus tenax. Virology 351: 280–290.
  • 15
    Haring M, Rachel R, Peng X, Garrett RA, Prangishvili D ( 2005) Viral diversity in hot springs of Pozzuoli, Italy, and characterization of a unique archaeal virus, Acidianus bottle-shaped virus, from a new family, the Ampullaviridae. J Virol 79: 9904–9911.
  • 16
    Haring M, Vestergaard G, Rachel R, Chen L, Garrett RA, Prangishvili D ( 2005) Virology: independent virus development outside a host. Nature 436: 1101–1102.
  • 17
    Rice G, Tang L, Stedman K, Roberto F, Spuhler J, Gillitzer E, Johnson JE, Douglas T, Young M ( 2004) The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life. Proc Natl Acad Sci USA 101: 7716–7720.
  • 18
    Xiang X, Chen L, Huang L, Luo Y, She Q, Huang L ( 2005) Sulfolobus tengchongensis spindle-shaped virus STSV1: virus-host interactions and genomic features. J Virol 79: 8677–8686.
  • 19
    Geslin C, Le Romancer M, Gaillard M, Erauso G, Prieur D ( 2003) Observation of virus-like particles in high temperature enrichment cultures from deep-sea hydrothermal vents. Res Microbiol 154: 303–307.
  • 20
    Leslie AGW ( 1992) Joint CCP4 and EACMB newsletter protein crystallography. Warrington, United Kingdom: Daresbury Laboratory, p 26.
  • 21
    Bond CS ( 2003) TopDraw: a sketchpad for protein structure topology cartoons. Bioinformatics 19: 311–312.
  • 22
    Holst M, Saied F ( 1995) Numerical solution of the nonlinear Poisson-Boltzmann equation: developing more robust and efficient methods. J Comput Chem 16: 337–364.
    Direct Link:
  • 23
    Walhout AI, Temple GF, Brasch MA, Hartley JL, Lorson MA, van den Heuvel S, Vidal M ( 2000) GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. Methods Enzymol 328: 575–592.
  • 24
    Evans P ( 2006) Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr 62(Part 1): 72–82.
  • 25
    Schneider TR, Sheldrick GM ( 2002) Substructure solution with SHELXD. Acta Crystallogr D Biol Crystallogr 58(Part 10, Part 2): 1772–1779.
    Direct Link:
  • 26
    Terwilliger TC, Berendzen J ( 1999) Automated MAD and MIR structure solution. Acta Crystallogr D Biol Crystallogr 55(Part 4): 849–861.
    Direct Link:
  • 27
    Terwilliger TC ( 2000) Maximum-likelihood density modification. Acta Crystallogr D Biol Crystallogr 56(Part 8): 965–972.
    Direct Link:
  • 28
    Perrakis A, Morris R, Lamzin VS ( 1999) Automated protein model building combined with iterative structure refinement. Nat Struct Biol 6: 458–463.
  • 29
    Jones TA, Zou JY, Cowan SW, Kjeldgaard M ( 1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110–119.
    Direct Link:
  • 30
    Murshudov GN, Vagin AA, Dodson EJ ( 1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53(Part 3): 240–255.
    Direct Link:
  • 31
    Lovell SC, Davis IW, Arendall WB3rd, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC ( 2003) Structure validation by Cα geometry: phi, psi, and Cβ deviation. Proteins 50: 437–450.
    Direct Link:
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