SEARCH

SEARCH BY CITATION

References

  • 1
    Monod J, Wyman J, Changeux JP ( 1965) On the nature of allosteric transitions: a plausible model. J Mol Biol 12: 88118.
  • 2
    Koshland DE, Némethy G, Filmer D ( 1966) Comparison of experimental binding data and theoretical models in proteins containing subunits. Biochemistry 5: 365385.
  • 3
    Hill AV ( 1913) The combinations of haemoglobin with oxygen and with carbon monoxide. I. Biochem J 5: 471480.
  • 4
    Adair GS ( 1925) The hemoglobin system VI. The oxygen dissociation curve of hemoglobin. J Biol Chem 63: 529545.
  • 5
    Perutz MF ( 1970) Stereochemistry of cooperative effects in haemoglobin. Nature 228: 726734.
  • 6
    Perutz MF, Wilkinson AJ, Paoli M, Dodson GG ( 1998) The stereochemical mechanism of the cooperative effects in hemoglobin revisited. Annu Rev Biophys Biomol Struct 27: 134.
  • 7
    Hillen W, Klockan G, Kaffenberger I, Wray LV, Reznikoff WS ( 1982) Purification of the Tet repressor and Tet operator from the transposon Tn10 and characterization of their interaction. J Biol Chem 257: 66056613.
  • 8
    Adhya S, Garges S ( 1990) Positive control. J Biol Chem 265: 1079710800.
  • 9
    Kolb A, Busby S, Buc H, Garges S, Adhya S ( 1993) Transcriptional regulation by cAMP and its receptor protein. Annu Rev Biochem 62: 749795.
  • 10
    Reznikoff W ( 1992) Catabolite gene activator protein activation of lac transcription. J Bacteriol 174: 655658.
  • 11
    Wissmann A, Meier I, Hillen W ( 1988) Saturation mutagenesis of the Tn10-encoded tet operator O1. Identification of base-pairs involved in Tet repressor recognition. J Mol Biol 202: 397406.
  • 12
    Sizemore C, Wissmann A, Gülland U, Hillen W ( 1990) Quantitative analysis of Tn10 Tet repressor binding to a complete set of tet operator mutants. Nucleic Acids Res 18: 28752880.
  • 13
    Orth P, Schnappinger D, Hillen W, Saenger W, Hinrichs W ( 2000) Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system. Nat Struct Biol 7: 215219.
  • 14
    Passner J, Steitz T ( 1997) The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer. Proc Natl Acad Sci 94: 28432847.
  • 15
    Timmes A, Rodgers M, Schleif R ( 2004) Biochemical and physiological properties of the DNA binding domain of AraC protein. J Mol Bio 340: 731738.
  • 16
    Kamionka A, Bogdanska-Urbaniak J, Scholz O, Hillen W ( 2004) Two mutations in the tetracycline repressor change the inducer anhydrotetracycline to a corepressor. Nucleic Acids Res 32: 842847.
  • 17
    Lederer T, Takahashi M, Hillen W ( 1995) Thermodynamic analysis of tetracycline-mediated induction of Tet repressor by a quantitative methylation protection assay. Anal Biochem 232: 190196.
  • 18
    Orth P, Cordes F, Schnappinger D, Hillen W, Saenger W, Hinrichs W ( 1998) Conformational changes of the Tet repressor induced by tetracycline trapping. J Mol Biol 279: 439447.
  • 19
    Hinrichs W, Kisker C, Duvel M, Muller A, Tovar K, Hillen W, Saenger W ( 1994) Structure of the Tet repressor-tetracycline complex and regulation of antibiotic resistance. Science 264: 418420.
  • 20
    Tiebel B, Aung-Hilbrich LM, Schnappinger D, Hillen W ( 1998) Conformational changes necessary for gene regulation by Tet repressor assayed by reversible disulfide bond formation. EMBO J 17: 51125119.
  • 21
    Tiebel B, Radzwill N, Aung-Hilbrich LM, Helbl V, Steinhoff HJ, Hillen W ( 1999) Domain motions accompanying Tet repressor induction defined by changes of interspin distances at selectively labeled sites. J Mol Biol 290: 229240.
  • 22
    Tiebel B, Garke K, Hillen W ( 2000) Observing conformational and activity changes of Tet repressor in vivo. Nat Struct Biol 7: 479481.
  • 23
    Antonini SP, Hillen W, Ettner N, Hinrichs W, Fantucci P, Doglia SM, Bousquet JA, Chabbert M ( 1997) Molecular mechanics analysis of Tet repressor TRP-43 fluorescence. Biophys J 72: 18001811.
  • 24
    Reichheld SE, Davidson AR ( 2006) Two-way interdomain signal transduction in tetracycline repressor. J Mol Biol 361: 382389.
  • 25
    Alexsandrov A, Schuldt L, Hinrichs W, Simonson T ( 2008) Tet repressor induction by tetracycline: a molecular dynamics, continuum electrostatics, and crystallographic study. J Mol Biol 378: 898912.
  • 26
    Garges S, Adhya S ( 1985) Sites of allosteric shift in the structure of the cyclic AMP receptor protein. Cell 41: 745751.
  • 27
    Garges S, Adhya S ( 1988) Cyclic AMP-induced conformational change of cyclic AMP receptor protein (CRP): intragenic suppressors of cyclic AMP-independent CRP mutations. J Bacteriol 170: 14171422.
  • 28
    Kim J, Adhya S, Garges S ( 1992) Allosteric changes in the cAMP receptor protein of Escherichia coli: hinge reorientation. Proc Natl Acad Sci 89: 97009704.
  • 29
    Cheng X, Lee JC ( 1998) Differential perturbation of intersubunit and interdomain communications by glycine 141 mutation in Escherichia coli CRP. Biochemistry 37: 5160.
  • 30
    Baichoo N, Heyduk T ( 1999) Mapping cyclic nucleotide-induced conformational changes in cyclicAMP receptor protein by a protein footprinting technique using different chemical proteases. Protein Sci 8: 518528.
  • 31
    Won H, Yamazaki T, Lee T, Yoon M, Park S, Kyogoku Y, Lee B ( 2000) Structural understanding of the allosteric conformational change of cyclic AMP receptor protein by cyclic AMP binding. Biochemistry 39: 1395313962.
  • 32
    Passner JM, Schultz SC, Steitz TA ( 2000) Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 Å resolution. J Mol Biol 304: 847859.
  • 33
    Dong AC, Malecki JM, Lee L, Carpenter JF, Lee JC ( 2002) Ligand-induced conformational and structural dynamics changes in Escherichia coli cyclic AMP receptor protein. Biochemistry 41: 66606667.
  • 34
    Harmer T, Wu M, Schleif R ( 2001) The role of rigidity in DNA looping-unlooping by AraC. Proc Natl Acad Sci 98: 427431.
  • 35
    Ettner N, Müller G, Berens C, Backes H, Schnappinger D, Schreppel T, Pfleiderer K, Hillen W ( 1996) Fast large-scale purification of tetracycline repressor variants from overproducing Escherichia coli strains. J Chromatogr A 742: 95105.
  • 36
    Schleif R, Wensink P ( 1981) Practical methods in molecular biology. New York: Springer-Verlag.
  • 37
    Gill SC, von Hippel PH ( 1989) Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182: 319326.
  • 38
    Zhou Y, Zhang X, Ebright R ( 1991) Random mutagenesis of gene-sized DNA molecules by use of PCR with Taq DNA polymerase. Nucleic Acids Res 19: 6052.
  • 39
    Burgess RR, Jendrisak JJ ( 1975) A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry 14: 46344638.
  • 40
    Carra J, Schleif R ( 1993) Variation of half-site organization and DNA looping by AraC protein. EMBO J 12: 3544.
  • 41
    Boothe JH, Morton J, Petisi JP, Wilkinson RG, Williams JH ( 1953) Tetracycline J Am Chem Soc 75: 4621.
  • 42
    Rodgers M, Schleif R ( 2008) DNA tape measurements of AraC. Nucleic Acids Res 36: 404410.
  • 43
    Abramoff MD, Magelhaes PJ, Ram SJ ( 2004) Image processing with ImageJ. Biophoton Int 11: 3642.