Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

Special Issue: CAPRI—Critical Assessment of PRedicted Interactions

1 July 2003

Volume 52, Issue 1

Pages 1–122

Issue edited by: Joël Janin

  1. Editor's Corner

    1. Top of page
    2. Editor's Corner
    3. Research Articles
    1. Docking in CAPRI (page 1)

      Joël Janin

      Article first published online: 12 MAY 2003 | DOI: 10.1002/prot.10398

  2. Research Articles

    1. Top of page
    2. Editor's Corner
    3. Research Articles
    1. CAPRI: A Critical Assessment of PRedicted Interactions (pages 2–9)

      Joël Janin, Kim Henrick, John Moult, Lynn Ten Eyck, Michael J. E. Sternberg, Sandor Vajda, Ilya Vakser and Shoshana J. Wodak

      Article first published online: 13 MAY 2003 | DOI: 10.1002/prot.10381

    2. GAPDOCK: A genetic algorithm approach to protein docking in CAPRI round 1 (pages 10–14)

      Eleanor J. Gardiner, Peter Willett and Peter J. Artymiuk

      Article first published online: 12 MAY 2003 | DOI: 10.1002/prot.10386

    3. Modeling protein complexes with BiGGER (pages 19–23)

      Ludwig Krippahl, José J. Moura and P. Nuno Palma

      Article first published online: 12 MAY 2003 | DOI: 10.1002/prot.10387

    4. Finding needles in haystacks: Reranking DOT results by using shape complementarity, cluster analysis, and biological information (pages 33–40)

      Dennis S. Law, Lynn F. Ten Eyck, Omer Katzenelson, Igor Tsigelny, Victoria A. Roberts, Mike E. Pique and Julie C. Mitchell

      Article first published online: 13 MAY 2003 | DOI: 10.1002/prot.10395

    5. Prediction of the unknown: Inspiring experience with the CAPRI experiment (pages 41–46)

      Efrat Ben-Zeev, Alexander Berchanski, Alexander Heifetz, Boaz Shapira and Miriam Eisenstein

      Article first published online: 13 MAY 2003 | DOI: 10.1002/prot.10392

    6. A soft docking algorithm for predicting the structure of antibody-antigen complexes (pages 47–50)

      Chun Hua Li, Xiao Hui Ma, Wei Zu Chen and Cun Xin Wang

      Article first published online: 13 MAY 2003 | DOI: 10.1002/prot.10382

    7. Assessment of blind predictions of protein–protein interactions: Current status of docking methods (pages 51–67)

      Raúl Méndez, Raphaël Leplae, Leonardo De Maria and Shoshana J. Wodak

      Article first published online: 13 MAY 2003 | DOI: 10.1002/prot.10393

    8. ZDOCK predictions for the CAPRI challenge (pages 68–73)

      Rong Chen, Weiwei Tong, Julian Mintseris, Li Li and Zhiping Weng

      Article first published online: 13 MAY 2003 | DOI: 10.1002/prot.10388

    9. ZDOCK: An initial-stage protein-docking algorithm (pages 80–87)

      Rong Chen, Li Li and Zhiping Weng

      Article first published online: 14 MAY 2003 | DOI: 10.1002/prot.10389

    10. A protein–protein docking benchmark (pages 88–91)

      Rong Chen, Julian Mintseris, Joël Janin and Zhiping Weng

      Article first published online: 14 MAY 2003 | DOI: 10.1002/prot.10390

    11. Successful discrimination of protein interactions (pages 92–97)

      Carlos J. Camacho and David W. Gatchell

      Article first published online: 14 MAY 2003 | DOI: 10.1002/prot.10394

    12. Taking geometry to its edge: Fast unbound rigid (and hinge-bent) docking (pages 107–112)

      Dina Schneidman-Duhovny, Yuval Inbar, Vladimir Polak, Maxim Shatsky, Inbal Halperin, Hadar Benyamini, Adi Barzilai, Oranit Dror, Nurit Haspel, Ruth Nussinov and Haim J. Wolfson

      Article first published online: 14 MAY 2003 | DOI: 10.1002/prot.10397

    13. Protein–protein docking predictions for the CAPRI experiment (pages 118–122)

      Jeffrey J. Gray, Stewart E. Moughon, Tanja Kortemme, Ora Schueler-Furman, Kira M.S. Misura, Alexandre V. Morozov and David Baker

      Article first published online: 14 MAY 2003 | DOI: 10.1002/prot.10384

SEARCH

SEARCH BY CITATION