Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

15 May 2005

Volume 59, Issue 3

Pages 393–652

  1. Prediction Report

    1. Top of page
    2. Prediction Report
    3. Research Articles
    4. Structure Notes
    1. Assembly factors of F1Fo-ATP synthase across genomes (pages 393–402)

      Andrea Pícková, Martin Potocký and Josef Houštěk

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20452

  2. Research Articles

    1. Top of page
    2. Prediction Report
    3. Research Articles
    4. Structure Notes
    1. Linking tumor cell cytotoxicity to mechanism of drug action: An integrated analysis of gene expression, small-molecule screening and structural databases (pages 403–433)

      David G. Covell, Anders Wallqvist, Ruili Huang, Narmada Thanki, Alfred A. Rabow and Xiang-Jun Lu

      Version of Record online: 18 MAR 2005 | DOI: 10.1002/prot.20392

    2. Computational identification of proteins for selectivity assays (pages 434–443)

      Sukjoon Yoon, Andrew Smellie, David Hartsough and Anton Filikov

      Version of Record online: 15 MAR 2005 | DOI: 10.1002/prot.20428

    3. Addressing the intrinsic disorder bottleneck in structural proteomics (pages 444–453)

      Christopher J. Oldfield, Eldon L. Ulrich, Yugong Cheng, A. Keith Dunker and John L. Markley

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20446

    4. Automated use of mutagenesis data in structure prediction (pages 454–466)

      Vikas Nanda and William F. DeGrado

      Version of Record online: 14 MAR 2005 | DOI: 10.1002/prot.20382

    5. Combining prediction of secondary structure and solvent accessibility in proteins (pages 467–475)

      Rafał Adamczak, Aleksey Porollo and Jarosław Meller

      Version of Record online: 14 MAR 2005 | DOI: 10.1002/prot.20441

    6. Protein secondary structure prediction with dihedral angles (pages 476–481)

      Matthew J. Wood and Jonathan D. Hirst

      Version of Record online: 18 MAR 2005 | DOI: 10.1002/prot.20435

    7. Sequence–structure–function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis (pages 482–488)

      Elżbieta Purta, Françoise van Vliet, Catherine Tricot, Lara G. De Bie, Marcin Feder, Krzysztof Skowronek, Louis Droogmans and Janusz M. Bujnicki

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20454

    8. Quantum study of mutational effect in binding of efavirenz to HIV-1 RT (pages 489–495)

      Ye Mei, Xiao He, Yun Xiang, Da W. Zhang and J.Z.H. Zhang

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20455

    9. Empirical lipid propensities of amino acid residues in multispan alpha helical membrane proteins (pages 496–509)

      Larisa Adamian, Vikas Nanda, William F. DeGrado and Jie Liang

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20456

    10. Molecular dynamics simulation of the aggregation of the core-recognition motif of the islet amyloid polypeptide in explicit water (pages 519–527)

      Giorgio Colombo, Isabella Daidone, Ehud Gazit, Andrea Amadei and Alfredo Di Nola

      Version of Record online: 18 MAR 2005 | DOI: 10.1002/prot.20426

    11. Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction (pages 545–554)

      Marcin Król, Irena Roterman, Barbara Piekarska, Leszek Konieczny, Janina Rybarska, Barbara Stopa and Paweł Spólnik

      Version of Record online: 18 MAR 2005 | DOI: 10.1002/prot.20434

    12. Induced refolding of a temperature denatured llama heavy-chain antibody fragment by its antigen (pages 555–564)

      Edward Dolk, Cees van Vliet, Janice M.J. Perez, Gert Vriend, Hervé Darbon, Gilles Ferrat, Christian Cambillau, Leon G.J. Frenken and Theo Verrips

      Version of Record online: 18 MAR 2005 | DOI: 10.1002/prot.20378

    13. Multiple folding mechanisms of protein ubiquitin (pages 565–579)

      Jian Zhang, Meng Qin and Wei Wang

      Version of Record online: 14 MAR 2005 | DOI: 10.1002/prot.20430

    14. Structural analysis of interactions for complex formation between Ferredoxin-NADP+ reductase and its protein partners (pages 592–602)

      Tomás Mayoral, Marta Martínez-Júlvez, Inmaculada Pérez-Dorado, Julia Sanz-Aparicio, Carlos Gómez-Moreno, Milagros Medina and Juan A. Hermoso

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20450

    15. Identification and distribution of protein families in 120 completed genomes using Gene3D (pages 603–615)

      David Lee, Alastair Grant, Russell L. Marsden and Christine Orengo

      Version of Record online: 14 MAR 2005 | DOI: 10.1002/prot.20409

    16. PPRODO: Prediction of protein domain boundaries using neural networks (pages 627–632)

      Jaehyun Sim, Seung-Yeon Kim and Jooyoung Lee

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20442

    17. Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies (pages 633–643)

      Robert C. Tyler, David J. Aceti, Craig A. Bingman, Claudia C. Cornilescu, Brian G. Fox, Ronnie O. Frederick, Won Bae Jeon, Min S. Lee, Craig S. Newman, Francis C. Peterson, George N. Phillips Jr., Mark N. Shahan, Shanteri Singh, Jikui Song, Hassan K. Sreenath, Ejan M. Tyler, Eldon L. Ulrich, Dmitriy A. Vinarov, Frank C. Vojtik, Brian F. Volkman, Russell L. Wrobel, Qin Zhao and John L. Markley

      Version of Record online: 23 MAR 2005 | DOI: 10.1002/prot.20436

  3. Structure Notes

    1. Top of page
    2. Prediction Report
    3. Research Articles
    4. Structure Notes
    1. You have free access to this content
      Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus (pages 644–647)

      Ken Kitano, Akiko Kita, Toshio Hakoshima, Youichi Niimura and Kunio Miki

      Version of Record online: 15 MAR 2005 | DOI: 10.1002/prot.20412

    2. You have free access to this content
      Structure of YciI from Haemophilus influenzae (HI0828) reveals a ferredoxin-like α/β-fold with a histidine/aspartate centered catalytic site (pages 648–652)

      Mark A. Willis, Feng Song, Zhihao Zhuang, Wojciech Krajewski, Vani Rao Chalamasetty, Prasad Reddy, Andrew Howard, Debra Dunaway-Mariano and Osnat Herzberg

      Version of Record online: 18 MAR 2005 | DOI: 10.1002/prot.20411

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