Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

1 June 2005

Volume 59, Issue 4

Pages 655–881

  1. Editor's Corner

    1. Top of page
    2. Editor's Corner
    3. Research Articles
    4. Structure Notes
    5. Structure Note
    1. Assessing precision and accuracy of protein structures derived from NMR data (pages 655–661)

      David A. Snyder, Aneerban Bhattacharya, Yuanpeng J. Huang and Gaetano T. Montelione

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20499

  2. Research Articles

    1. Top of page
    2. Editor's Corner
    3. Research Articles
    4. Structure Notes
    5. Structure Note
    1. RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank (pages 662–672)

      Aart J. Nederveen, Jurgen F. Doreleijers, Wim Vranken, Zachary Miller, Chris A.E.M. Spronk, Sander B. Nabuurs, Peter Güntert, Miron Livny, John L. Markley, Michael Nilges, Eldon L. Ulrich, Robert Kaptein and Alexandre M.J.J. Bonvin

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20408

    2. The CCPN data model for NMR spectroscopy: Development of a software pipeline (pages 687–696)

      Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides and Ernest D. Laue

      Version of Record online: 6 APR 2005 | DOI: 10.1002/prot.20449

    3. Quantifying allosteric effects in proteins (pages 697–707)

      Dengming Ming and Michael E. Wall

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20440

    4. Comparative molecular dynamics simulations of HIV-1 integrase and the T66I/M154I mutant: Binding modes and drug resistance to a diketo acid inhibitor (pages 723–741)

      Alessandro Brigo, Keun Woo Lee, Federico Fogolari, Gabriela Iurcu Mustata and James M. Briggs

      Version of Record online: 6 APR 2005 | DOI: 10.1002/prot.20447

    5. Computational analysis of molecular basis of 1:1 interactions of NRG-1β wild-type and variants with ErbB3 and ErbB4 (pages 742–756)

      Cheng Luo, Lingfei Xu, Suxin Zheng, Xiaomin Luo, Jianhua Shen, Hualiang Jiang, Xifu Liu and Mingdong Zhou

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20443

    6. Folding pathways for initiator and effector procaspases from computer simulations (pages 765–772)

      Stefano Piana, Zoe Taylor and Ursula Rothlisberger

      Version of Record online: 12 APR 2005 | DOI: 10.1002/prot.20451

    7. Amphipathic α-helices in proteins: Results from analysis of protein structures (pages 791–801)

      Ambure Sharadadevi, Chandrasekaran Sivakamasundari and Ramakrishnan Nagaraj

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20459

    8. A structural alphabet for local protein structures: Improved prediction methods (pages 810–827)

      Catherine Etchebest, Cristina Benros, Serge Hazout and Alexandre G. de Brevern

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20458

    9. Crystal structure of a calcium-induced dimer of two isoforms of cobra phospholipase A2 at 1.6 Å resolution (pages 856–863)

      T. Jabeen, S. Sharma, N. Singh, R. K. Singh, P. Kaur, M. Perbandt, Ch. Betzel, A. Srinivasan and T. P. Singh

      Version of Record online: 12 APR 2005 | DOI: 10.1002/prot.20464

  3. Structure Notes

    1. Top of page
    2. Editor's Corner
    3. Research Articles
    4. Structure Notes
    5. Structure Note
    1. You have free access to this content
      Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 Å resolution reveals a new fold (pages 864–868)

      Inna Levin, Mitchell D. Miller, Robert Schwarzenbacher, Daniel McMullan, Polat Abdubek, Eileen Ambing, Tanya Biorac, Jamison Cambell, Jaume M. Canaves, Hsiu-Ju Chiu, Ashley M. Deacon, Michael DiDonato, Marc-André Elsliger, Adam Godzik, Carina Grittini, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Gye Won Han, Justin Haugen, Michael Hornsby, Lukasz Jaroszewski, Cathy Karlak, Heath E. Klock, Eric Koesema, Andreas Kreusch, Peter Kuhn, Scott A. Lesley, Andrew Morse, Kin Moy, Edward Nigoghossian, Jie Ouyang, Rebecca Page, Kevin Quijano, Ron Reyes, Alyssa Robb, Eric Sims, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Jeff Velasquez, Juli Vincent, Xianhong Wang, Bill West, Guenter Wolf, Qingping Xu, Olga Zagnitko, Keith O. Hodgson, John Wooley and Ian A. Wilson

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20420

    2. You have free access to this content
      Crystal structure of S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 Å resolution reveals a new fold (pages 869–874)

      Irimpan Mathews, Robert Schwarzenbacher, Daniel McMullan, Polat Abdubek, Eileen Ambing, Herbert Axelrod, Tanya Biorac, Jaume M. Canaves, Hsiu-Ju Chiu, Ashley M. Deacon, Michael DiDonato, Marc-André Elsliger, Adam Godzik, Carina Grittini, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Gye Won Han, Justin Haugen, Michael Hornsby, Lukasz Jaroszewski, Heath E. Klock, Eric Koesema, Andreas Kreusch, Peter Kuhn, Scott A. Lesley, Inna Levin, Mitchell D. Miller, Kin Moy, Edward Nigoghossian, Jie Ouyang, Jessica Paulsen, Kevin Quijano, Ron Reyes, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Jeff Velasquez, Juli Vincent, Aprilfawn White, Guenter Wolf, Qingping Xu, Keith O. Hodgson, John Wooley and Ian A. Wilson

      Version of Record online: 8 APR 2005 | DOI: 10.1002/prot.20419

  4. Structure Note

    1. Top of page
    2. Editor's Corner
    3. Research Articles
    4. Structure Notes
    5. Structure Note
    1. You have free access to this content
      Structural characterization of an iron–sulfur cluster assembly protein IscU in a zinc-bound form (pages 875–881)

      Jinyu Liu, Natalia Oganesyan, Dong-Hae Shin, Jarmila Jancarik, Hisao Yokota, Rosalind Kim and Sung-Hou Kim

      Version of Record online: 6 APR 2005 | DOI: 10.1002/prot.20421

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