Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

1 September 2005

Volume 60, Issue 4

Pages 571–811

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Review
    4. Research Articles
    5. Structure Notes
    1. How well are protein structures annotated in secondary databases? (pages 571–576)

      Kristian Rother, Elke Michalsky and Ulf Leser

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20520

  2. Review

    1. Top of page
    2. Short Communications
    3. Review
    4. Research Articles
    5. Structure Notes
    1. Modeling protein recognition of carbohydrates (pages 591–597)

      Alain Laederach and Peter J. Reilly

      Version of Record online: 6 JUL 2005 | DOI: 10.1002/prot.20545

  3. Research Articles

    1. Top of page
    2. Short Communications
    3. Review
    4. Research Articles
    5. Structure Notes
    1. Design and characterization of a multimeric DNA binding protein using Sac7d and GCN4 as templates (pages 617–628)

      Sz-Wei Wu, Tzu-Ping Ko, Chia-Cheng Chou and Andrew H.-J. Wang

      Version of Record online: 18 JUL 2005 | DOI: 10.1002/prot.20524

    2. Virtual screening to enrich a compound collection with CDK2 inhibitors using docking, scoring, and composite scoring models (pages 629–643)

      Simona Cotesta, Fabrizio Giordanetto, Jean-Yves Trosset, Patrizia Crivori, Romano T. Kroemer, Pieter F.W. Stouten and Anna Vulpetti

      Version of Record online: 18 JUL 2005 | DOI: 10.1002/prot.20473

    3. Co-translational myristoylation alters the quaternary structure of HIV-1 Nef in solution (pages 658–669)

      Caitríona A. Dennis, Andrew Baron, J. Günter Grossmann, Sabine Mazaleyrat, Mark Harris and Joachim Jaeger

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20544

    4. Main-chain conformational tendencies of amino acids (pages 679–689)

      Robert J. Anderson, Zhiping Weng, Robert K. Campbell and Xuliang Jiang

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20530

    5. Fold usage on genomes and protein fold evolution (pages 690–700)

      Sanne Abeln and Charlotte M. Deane

      Version of Record online: 6 JUL 2005 | DOI: 10.1002/prot.20506

    6. The Gō model revisited: Native structure and the geometric coupling between local and long-range contacts (pages 712–722)

      Patrícia F. N. Faísca, Margarida M. Telo da Gama and Ana Nunes

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20521

    7. Statistical characterization of salt bridges in proteins (pages 732–739)

      James N. Sarakatsannis and Yong Duan

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20549

    8. Prediction of the conformation and geometry of loops in globular proteins: Testing ArchDB, a structural classification of loops (pages 746–757)

      Narcis Fernandez-Fuentes, Enrique Querol, Francesc X. Aviles, Michael J. E. Sternberg and Baldomero Oliva

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20516

    9. Design of combinatorial protein libraries of optimal size (pages 769–777)

      Manish C. Saraf, Anshuman Gupta and Costas D. Maranas

      Version of Record online: 6 JUL 2005 | DOI: 10.1002/prot.20490

    10. Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily (pages 778–786)

      Dominique Liger, Sophie Quevillon-Cheruel, Isabelle Sorel, Michael Bremang, Karine Blondeau, Ilham Aboulfath, Joël Janin, Herman van Tilbeurgh and Nicolas Leulliot

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20548

    11. Structural analysis of a set of proteins resulting from a bacterial genomics project (pages 787–796)

      J. Badger, J.M. Sauder, J.M. Adams, S. Antonysamy, K. Bain, M.G. Bergseid, S.G. Buchanan, M.D. Buchanan, Y. Batiyenko, J.A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E.B. Furlong, K.S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H.A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C.D. Marsh, I. Miller, J. Molinari, H.J. Muller-Dieckmann, J.M. Newman, B.W. Noland, B. Pagarigan, F. Park, T.S. Peat, K.W. Post, S. Radojicic, A. Ramos, R. Romero, M.E. Rutter, W.E. Sanderson, K.D. Schwinn, J. Tresser, J. Winhoven, T.A. Wright, L. Wu, J. Xu and T.J.R. Harris

      Version of Record online: 14 JUL 2005 | DOI: 10.1002/prot.20541

  4. Structure Notes

    1. Top of page
    2. Short Communications
    3. Review
    4. Research Articles
    5. Structure Notes
    1. You have free access to this content
      Crystal structure of an Apo mRNA decapping enzyme (DcpS) from Mouse at 1.83 Å resolution (pages 797–802)

      Gye Won Han, Robert Schwarzenbacher, Daniel McMullan, Polat Abdubek, Eileen Ambing, Herbert Axelrod, Tanya Biorac, Jaume M. Canaves, Hsiu-Ju Chiu, Xiaoping Dai, Ashley M. Deacon, Michael DiDonato, Marc-André Elsliger, Adam Godzik, Carina Grittini, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Justin Haugen, Michael Hornsby, Lukasz Jaroszewski, Heath E. Klock, Eric Koesema, Andreas Kreusch, Peter Kuhn, Scott A. Lesley, Timothy M. McPhillips, Mitchell D. Miller, Kin Moy, Edward Nigoghossian, Jessica Paulsen, Kevin Quijano, Ron Reyes, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Jeff Velasquez, Juli Vincent, Aprilfawn White, Guenter Wolf, Qingping Xu, Keith O. Hodgson, John Wooley and Ian A. Wilson

      Version of Record online: 6 JUL 2005 | DOI: 10.1002/prot.20467

    2. You have free access to this content
      Crystal structure of stilbene synthase from Arachis hypogaea (pages 803–806)

      Yasuhito Shomura, Ichiro Torayama, Dae-Yeon Suh, Ting Xiang, Akiko Kita, Ushio Sankawa and Kunio Miki

      Version of Record online: 18 JUL 2005 | DOI: 10.1002/prot.20584

    3. You have free access to this content
      Structure of HI0073 from Haemophilus influenzae, the nucleotide-binding domain of a two-protein nucleotidyl transferase (pages 807–811)

      Christopher Lehmann, Sadhana Pullalarevu, Wojciech Krajewski, Mark A. Willis, Andrey Galkin, Andrew Howard and Osnat Herzberg

      Version of Record online: 18 JUL 2005 | DOI: 10.1002/prot.20586

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