Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

1 December 2005

Volume 61, Issue 4

Pages 699–1149

  1. Prediction Report

    1. Top of page
    2. Prediction Report
    3. Research Articles
    4. Structure Notes
  2. Research Articles

    1. Top of page
    2. Prediction Report
    3. Research Articles
    4. Structure Notes
    1. Structural characterization of proteins using residue environments (pages 741–747)

      Sean D. Mooney, Mike Hsin-Ping Liang, Rob DeConde and Russ B. Altman

      Article first published online: 21 OCT 2005 | DOI: 10.1002/prot.20661

    2. A tetrapeptide-based method for polyproline II-type secondary structure prediction (pages 763–768)

      Peter K. Vlasov, Anna V. Vlasova, Vladimir G. Tumanyan and Natalia G. Esipova

      Article first published online: 17 OCT 2005 | DOI: 10.1002/prot.20670

    3. Comparative molecular dynamics—Similar folds and similar motions? (pages 809–822)

      Andrew Pang, Yalini Arinaminpathy, Mark S. P. Sansom and Philip C. Biggin

      Article first published online: 17 OCT 2005 | DOI: 10.1002/prot.20672

    4. Molecular docking of balanol to dynamics snapshots of protein kinase A (pages 850–858)

      Chung F. Wong, Jeremy Kua, Yingkai Zhang, T.P. Straatsma and J. Andrew McCammon

      Article first published online: 21 OCT 2005 | DOI: 10.1002/prot.20688

    5. Rational genomics I: Antisense open reading frames and codon bias in short-chain oxido reductase enzymes and the evolution of the genetic code (pages 900–906)

      William L. Duax, Robert Huether, Vladimir Z. Pletnev, David Langs, Anthony Addlagatta, Sonjay Connare, Lukas Habegger and Jay Gill

      Article first published online: 21 OCT 2005 | DOI: 10.1002/prot.20687

    6. External cross-validation for unbiased evaluation of protein family detectors: Application to allergens (pages 918–925)

      Daniel Soeria-Atmadja, Mikael Wallman, Åsa K. Björklund, Anders Isaksson, Ulf Hammerling and Mats G. Gustafsson

      Article first published online: 17 OCT 2005 | DOI: 10.1002/prot.20656

    7. Kinetic and crystallographic studies of glucopyranose spirohydantoin and glucopyranosylamine analogs inhibitors of glycogen phosphorylase (pages 966–983)

      Kimberly A. Watson, Evangelia D. Chrysina, Katerina E. Tsitsanou, Spyros E. Zographos, Georgios Archontis, George W.J. Fleet and Nikos G. Oikonomakos

      Article first published online: 12 OCT 2005 | DOI: 10.1002/prot.20653

    8. Glycogen phosphorylase inhibitors: A free energy perturbation analysis of glucopyranose spirohydantoin analogues (pages 984–998)

      G. Archontis, K. A. Watson, Q. Xie, G. Andreou, E. D. Chrysina, S. E. Zographos, N. G. Oikonomakos and M. Karplus

      Article first published online: 21 OCT 2005 | DOI: 10.1002/prot.20641

    9. Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8 (pages 999–1009)

      Ihsanawati, Takashi Kumasaka, Tomonori Kaneko, Chihiro Morokuma, Rie Yatsunami, Takao Sato, Satoshi Nakamura and Nobuo Tanaka

      Article first published online: 24 OCT 2005 | DOI: 10.1002/prot.20700

    10. The impact of the fourth disulfide bridge in scorpion toxins of the α-KTx6 subfamily (pages 1010–1023)

      Louis Carrega, Amor Mosbah, Gilles Ferrat, Christine Beeton, Nicolas Andreotti, Pascal Mansuelle, Hervé Darbon, Michel De Waard and Jean-Marc Sabatier

      Article first published online: 24 OCT 2005 | DOI: 10.1002/prot.20681

    11. Crystal structure of a new class of glutathione transferase from the model human hookworm nematode Heligmosomoides polygyrus (pages 1024–1031)

      David J. Schuller, Qun Liu, Irina A. Kriksunov, Alison M. Campbell, John Barrett, Peter M. Brophy and Quan Hao

      Article first published online: 27 SEP 2005 | DOI: 10.1002/prot.20649

    12. Refinement of unbound protein docking studies using biological knowledge (pages 1059–1067)

      Philipp Heuser, Davide Baù, Pascal Benkert and Dietmar Schomburg

      Article first published online: 5 OCT 2005 | DOI: 10.1002/prot.20634

    13. An intuitive approach to measuring protein surface curvature (pages 1068–1074)

      Ryan G. Coleman, Michael A. Burr, Diane L. Souvaine and Alan C. Cheng

      Article first published online: 18 OCT 2005 | DOI: 10.1002/prot.20680

    14. Multiple display of a protein domain on a bacterial polymeric scaffold (pages 1089–1100)

      P. O. Craig, P. M. Berguer, N. Ainciart, V. Zylberman, M. G. Thomas, L. J. Martinez Tosar, A. Bulloj, G. L. Boccaccio and F. A. Goldbaum

      Article first published online: 28 SEP 2005 | DOI: 10.1002/prot.20635

    15. Deuterium oxide promotes assembly and bundling of FtsZ protofilaments (pages 1101–1110)

      Manas Kumar Santra, Debjani Dasgupta and Dulal Panda

      Article first published online: 21 OCT 2005 | DOI: 10.1002/prot.20671

  3. Structure Notes

    1. Top of page
    2. Prediction Report
    3. Research Articles
    4. Structure Notes
    1. You have free access to this content
      Solution structure of HP1242 from Helicobacter pylori (pages 1111–1113)

      Su-Jin Kang, Sung Jean Park, Seo-Jeong Jung and Bong-Jin Lee

      Article first published online: 17 OCT 2005 | DOI: 10.1002/prot.20654

    2. You have free access to this content
      Solution structure of conserved hypothetical protein HP0894 from Helicobacter pylori (pages 1114–1116)

      Kyung-Doo Han, Sung-Jean Park, Sun-Bok Jang, Woo-Sung Son and Bong-Jin Lee

      Article first published online: 17 OCT 2005 | DOI: 10.1002/prot.20691

    3. You have free access to this content
      Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8 (pages 1117–1120)

      Motoyuki Hattori, Eiichi Mizohata, Miho Manzoku, Yoshitaka Bessho, Kazutaka Murayama, Takaho Terada, Seiki Kuramitsu, Mikako Shirouzu and Shigeyuki Yokoyama

      Article first published online: 25 OCT 2005 | DOI: 10.1002/prot.20692

    4. You have free access to this content
    5. You have free access to this content
      Crystal structure of the hypothetical protein ST2072 from Sulfolobus tokodaii (pages 1127–1131)

      Yoshikazu Tanaka, Kouhei Tsumoto, Eiki Tanabe, Yoshiaki Yasutake, Naoki Sakai, Min Yao, Isao Tanaka and Izumi Kumagai

      Article first published online: 13 OCT 2005 | DOI: 10.1002/prot.20619

    6. You have free access to this content
      Crystal structure of a conserved hypothetical protein (gi: 13879369) from Mouse at 1.90 Å resolution reveals a new fold (pages 1132–1136)

      Heath E. Klock, Robert Schwarzenbacher, Qingping Xu, Daniel McMullan, Polat Abdubek, Eileen Ambing, Herbert Axelrod, Tanya Biorac, Jaume M. Canaves, Hsiu-Ju Chiu, Ashley M. Deacon, Michael DiDonato, Marc-André Elsliger, Adam Godzik, Carina Grittini, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Gye Won Han, Justin Haugen, Michael Hornsby, Lukasz Jaroszewski, Eric Koesema, Andreas Kreusch, Peter Kuhn, Mitchell D. Miller, Kin Moy, Edward Nigoghossian, Jessica Paulsen, Kevin Quijano, Ron Reyes, Chris Rife, Eric Sims, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Jeff Velasquez, Juli Vincent, Aprilfawn White, Guenter Wolf, Keith O. Hodgson, John Wooley, Scott A. Lesley and Ian A. Wilson

      Article first published online: 13 OCT 2005 | DOI: 10.1002/prot.20610

    7. You have free access to this content
      Crystal structure of putative N-Acetyl-γ-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa) (pages 1137–1140)

      Tsuyoshi Nonaka, Akiko Kita, Jun Miura-Ohnuma, Etsuko Katoh, Noritoshi Inagaki, Toshimasa Yamazaki and Kunio Miki

      Article first published online: 20 OCT 2005 | DOI: 10.1002/prot.20679

    8. You have free access to this content
    9. You have free access to this content
      Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin (pages 1146–1149)

      Jongkeun Choi, Soonwoong Choi, Jae Kyung Chon, Jungwon Choi, Mee-Kyung Cha, Il-Han Kim and Whanchul Shin

      Article first published online: 21 OCT 2005 | DOI: 10.1002/prot.20704

SEARCH

SEARCH BY CITATION