Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

1 January 2006

Volume 62, Issue 1

Pages 1–307

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Short Communication
    4. Research Articles
    5. Structure Notes
    1. Managing and mining protein crystallization data (pages 4–7)

      Abdullah A. Amin, Noel G. Faux, Gustavo Fenalti, Geoffrey Williams, Adam Bernadou, Ben Daglish, Karen Keefe, Shayne Middleton, Joseph Rae, Kosmas Tetis, Ruby H.P. Law, Kate F. Fulton, Jamie Rossjohn, James C. Whisstock and Ashley M. Buckle

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20776

    2. The crystal structure of Aq_328 from the hyperthermophilic bacteria Aquifex aeolicus shows an ancestral histone fold (pages 8–16)

      Yang Qiu, Valentina Tereshko, Youngchang Kim, Rongguang Zhang, Frank Collart, Mohammed Yousef, Anthony Kossiakoff and Andrzej Joachimiak

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20590

  2. Short Communication

    1. Top of page
    2. Short Communications
    3. Short Communication
    4. Research Articles
    5. Structure Notes
  3. Research Articles

    1. Top of page
    2. Short Communications
    3. Short Communication
    4. Research Articles
    5. Structure Notes
    1. Assessing protein disorder and induced folding (pages 24–45)

      Véronique Receveur-Bréchot, Jean-Marie Bourhis, Vladimir N. Uversky, Bruno Canard and Sonia Longhi

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20750

    2. Structure, conformational stability, and enzymatic properties of acylphosphatase from the hyperthermophile Sulfolobus solfataricus (pages 64–79)

      Alessandra Corazza, Camillo Rosano, Katiuscia Pagano, Vera Alverdi, Gennaro Esposito, Cristina Capanni, Francesco Bemporad, Georgia Plakoutsi, Massimo Stefani, Fabrizio Chiti, Simone Zuccotti, Martino Bolognesi and Paolo Viglino

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20703

    3. Structure and mechanism of the farnesyl diphosphate synthase from Trypanosoma cruzi: Implications for drug design (pages 80–88)

      Sandra B. Gabelli, Jason S. McLellan, Andrea Montalvetti, Eric Oldfield, Roberto Docampo and L. Mario Amzel

      Version of Record online: 15 NOV 2005 | DOI: 10.1002/prot.20754

    4. Role of phosphorylated Thr160 for the activation of the CDK2/Cyclin A complex (pages 89–98)

      Marco De Vivo, Andrea Cavalli, Giovanni Bottegoni, Paolo Carloni and Maurizio Recanatini

      Version of Record online: 16 NOV 2005 | DOI: 10.1002/prot.20697

    5. Effect of linker segments on the stability of epithelial cadherin domain 2 (pages 111–121)

      Alka Prasad, Huaying Zhao, John M. Rutherford, Nicole Housley, Corey Nichols and Susan Pedigo

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20657

    6. The CDR1 of the human λVI light chains adopts a new canonical structure (pages 122–129)

      L. del Pozo Yauner, E. Ortiz and B. Becerril

      Version of Record online: 15 NOV 2005 | DOI: 10.1002/prot.20779

    7. B. subtilis ykuD protein at 2.0 Å resolution: Insights into the structure and function of a novel, ubiquitous family of bacterial enzymes (pages 144–151)

      Jakub Bielnicki, Yancho Devedjiev, Urszula Derewenda, Zbigniew Dauter, Andrzej Joachimiak and Zygmunt S. Derewenda

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20702

    8. Molecular dynamics study on the folding and metallation of the individual domains of metallothionein (pages 159–172)

      Kelly E. Rigby, Jayna Chan, Jason Mackie and Martin J. Stillman

      Version of Record online: 15 NOV 2005 | DOI: 10.1002/prot.20663

    9. Misfolding of the amyloid β-protein: A molecular dynamics study (pages 183–192)

      Dagmar Flöck, Stefano Colacino, Giorgio Colombo and Alfredo Di Nola

      Version of Record online: 17 NOV 2005 | DOI: 10.1002/prot.20683

    10. Pressure effect on the stability and the conformational dynamics of the D-Galactose/D-Glucose-binding protein from Escherichia coli (pages 193–201)

      Anna Marabotti, Petr Herman, Maria Staiano, Antonio Varriale, Marcella de Champdoré, Mosè Rossi, Zygmunt Gryczynski and Sabato D'Auria

      Version of Record online: 17 NOV 2005 | DOI: 10.1002/prot.20753

    11. Optimization of multiple-sequence alignment based on multiple-structure alignment (pages 209–217)

      Maxim Shatsky, Ruth Nussinov and Haim J. Wolfson

      Version of Record online: 17 NOV 2005 | DOI: 10.1002/prot.20665

    12. Prediction of transporter family from protein sequence by support vector machine approach (pages 218–231)

      H. H. Lin, L. Y. Han, C. Z. Cai, Z. L. Ji and Y. Z. Chen

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20605

    13. Computational characterization of the sequence landscape in simple protein alphabets (pages 232–243)

      M. Scott Shell, Pablo G. Debenedetti and Athanassios Z. Panagiotopoulos

      Version of Record online: 11 NOV 2005 | DOI: 10.1002/prot.20714

    14. A computational protocol to probe the role of solvation effects on the reduction potential of azurin mutants (pages 262–269)

      Vincenzo Barone, Francesca De Rienzo, Emma Langella, M. Cristina Menziani, Nadia Rega and Marco Sola

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20772

    15. Preparation of amino-acid-type selective isotope labeling of protein expressed in Pichia pastoris (pages 279–287)

      Chiu-Yueh Chen, Chun-Ho Cheng, Yi-Chun Chen, Jenq-Chang Lee, Shan-Ho Chou, Wenya Huang and Woei-Jer Chuang

      Version of Record online: 10 NOV 2005 | DOI: 10.1002/prot.20742

  4. Structure Notes

    1. Top of page
    2. Short Communications
    3. Short Communication
    4. Research Articles
    5. Structure Notes
    1. You have free access to this content
      NMR structure of protein yqbG from Bacillus subtilis reveals a novel α-helical protein fold (pages 288–291)

      Gaohua Liu, Yang Shen, Rong Xiao, Tom Acton, Li Chung Ma, Andrzej Joachimiak, Gaetano T. Montelione and Thomas Szyperski

      Version of Record online: 9 NOV 2005 | DOI: 10.1002/prot.20666

    2. You have free access to this content
      Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 Å resolution reveals a new fold (pages 292–296)

      Qingping Xu, Robert Schwarzenbacher, Daniel McMullan, Polat Abdubek, Sanjay Agarwalla, Eileen Ambing, Herbert Axelrod, Tanya Biorac, Jaume M. Canaves, Hsiu-Ju Chiu, Ashley M. Deacon, Michael DiDonato, Marc-André Elsliger, Adam Godzik, Carina Grittini, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Gye Won Han, Justin Haugen, Michael Hornsby, Lukasz Jaroszewski, Heath E. Klock, Eric Koesema, Andreas Kreusch, Peter Kuhn, Scott A. Lesley, Mitchell D. Miller, Kin Moy, Edward Nigoghossian, Jessica Paulsen, Kevin Quijano, Ron Reyes, Chris Rife, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Jeff Velasquez, Aprilfawn White, Guenter Wolf, Keith O. Hodgson, John Wooley and Ian A. Wilson

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20611

    3. You have free access to this content
      Crystal structure of dihydrodipicolinate synthase (BA3935) from Bacillus anthracis at 1.94 Å resolution (pages 297–301)

      Elena Blagova, Vladimir Levdikov, Natalia Milioti, Mark J. Fogg, Anne K. Kalliomaa, James A. Brannigan, Keith S. Wilson and Anthony J. Wilkinson

      Version of Record online: 14 NOV 2005 | DOI: 10.1002/prot.20684

    4. You have free access to this content
      Crystal structure of Escherichia coli DkgA, a broad-specificity aldo-keto reductase (pages 302–307)

      Sandra Jeudy, Vincent Monchois, Caroline Maza, Jean-Michel Claverie and Chantal Abergel

      Version of Record online: 11 NOV 2005 | DOI: 10.1002/prot.20710

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