Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

1 February 2006

Volume 62, Issue 2

Pages 309–561

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Research Commentary
    5. Structure Notes
    1. Intrinsic unstructuredness and abundance of PEST motifs in eukaryotic proteomes (pages 309–315)

      Gajinder Pal Singh, Mythily Ganapathi, Kuljeet Singh Sandhu and Debasis Dash

      Version of Record online: 18 NOV 2005 | DOI: 10.1002/prot.20746

    2. Minimal structural requirements for root effect: Crystal structure of the cathodic hemoglobin isolated from the antarctic fish Trematomus newnesi (pages 316–321)

      Lelio Mazzarella, Giovanna Bonomi, Maria C. Lubrano, Antonello Merlino, Antonio Riccio, Alessandro Vergara, Luigi Vitagliano, Cinzia Verde and Guido di Prisco

      Version of Record online: 18 NOV 2005 | DOI: 10.1002/prot.20709

  2. Research Articles

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Research Commentary
    5. Structure Notes
    1. Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning (pages 322–328)

      Jeong-Sun Kim, Dong Hae Shin, Ramona Pufan, Candice Huang, Hisao Yokota, Rosalind Kim and Sung-Hou Kim

      Version of Record online: 17 NOV 2005 | DOI: 10.1002/prot.20751

    2. Structure of a ribulose 5-phosphate 3-epimerase from Plasmodium falciparum (pages 338–342)

      J. Caruthers, J. Bosch, F. Buckner, W. Van Voorhis, P. Myler, E. Worthey, C. Mehlin, E. Boni, G. DeTitta, J. Luft, A. Lauricella, O. Kalyuzhniy, L. Anderson, F. Zucker, M. Soltis and Wim G. J. Hol

      Version of Record online: 22 NOV 2005 | DOI: 10.1002/prot.20764

    3. Will my protein crystallize? A sequence-based predictor (pages 343–355)

      Pawel Smialowski, Thorsten Schmidt, Jürgen Cox, Andreas Kirschner and Dmitrij Frishman

      Version of Record online: 28 NOV 2005 | DOI: 10.1002/prot.20789

    4. Target selection and deselection at the Berkeley Structural Genomics Center (pages 356–370)

      John-Marc Chandonia, Sung-Hou Kim and Steven E. Brenner

      Version of Record online: 7 NOV 2005 | DOI: 10.1002/prot.20674

    5. Large-scale survey for potentially targetable indels in bacterial and protozoan proteins (pages 371–380)

      Artem Cherkasov, Shang-Jung Lee, Devki Nandan and Neil E. Reiner

      Version of Record online: 28 NOV 2005 | DOI: 10.1002/prot.20631

    6. SimFold energy function for de novo protein structure prediction: Consensus with Rosetta (pages 381–398)

      Yoshimi Fujitsuka, George Chikenji and Shoji Takada

      Version of Record online: 17 NOV 2005 | DOI: 10.1002/prot.20748

    7. Side-chain entropy effects on protein secondary structure formation (pages 411–420)

      Brian W. Chellgren and Trevor P. Creamer

      Version of Record online: 28 NOV 2005 | DOI: 10.1002/prot.20766

    8. Comparative structure–function analysis of cytolethal distending toxins (pages 421–434)

      Xin Hu, Dragana Nesic and C. Erec Stebbins

      Version of Record online: 22 NOV 2005 | DOI: 10.1002/prot.20767

    9. Comparative sequence and structure analysis reveal features of cold adaptation of an enzyme in the thermolysin family (pages 435–449)

      Olayiwola A. Adekoya, Ronny Helland, Nils-Peder Willassen and Ingebrigt Sylte

      Version of Record online: 17 NOV 2005 | DOI: 10.1002/prot.20773

    10. Thermal denaturation of a recombinant mouse amelogenin: Circular dichroism and differential scanning calorimetric studies (pages 461–469)

      Motohisa Oobatake, Tomoko Yamasaki, James P. Simmer and V. Renugopalakrishnan

      Version of Record online: 11 NOV 2005 | DOI: 10.1002/prot.20747

    11. Similarity networks of protein binding sites (pages 470–478)

      Ziding Zhang and Martin G. Grigorov

      Version of Record online: 18 NOV 2005 | DOI: 10.1002/prot.20752

    12. A method for localizing ligand binding pockets in protein structures (pages 479–488)

      Fabian Glaser, Richard J. Morris, Rafael J. Najmanovich, Roman A. Laskowski and Janet M. Thornton

      Version of Record online: 22 NOV 2005 | DOI: 10.1002/prot.20769

    13. Unique GMP-binding site in Mycobacterium tuberculosis guanosine monophosphate kinase (pages 489–500)

      Guillaume Hible, Petya Christova, Louis Renault, Edward Seclaman, Andrew Thompson, Eric Girard, Hélène Munier-Lehmann and Jacqueline Cherfils

      Version of Record online: 15 NOV 2005 | DOI: 10.1002/prot.20662

    14. A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors (pages 509–538)

      Jean-Sebastien Surgand, Jordi Rodrigo, Esther Kellenberger and Didier Rognan

      Version of Record online: 17 NOV 2005 | DOI: 10.1002/prot.20768

  3. Research Commentary

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Research Commentary
    5. Structure Notes
    1. Comment on ion transit pathways and gating in ClC chloride channels (pages 553–554)

      Thomas Beck, Jian Yin, Zhifeng Kuang, Uma Mahankali and Guogang Feng

      Version of Record online: 21 NOV 2005 | DOI: 10.1002/prot.20705

  4. Structure Notes

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Research Commentary
    5. Structure Notes
    1. You have free access to this content
      Crystal structure of ADP/AMP complex of Escherichia coli adenylate kinase (pages 555–556)

      Michael B. Berry, Euiyoung Bae, Tim R. Bilderback, Michael Glaser and George N. Phillips Jr.

      Version of Record online: 21 NOV 2005 | DOI: 10.1002/prot.20699

    2. You have free access to this content
      Crystal structure of the YjgF/YER057c/UK114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7 (pages 557–561)

      Takuya Miyakawa, Woo Cheol Lee, Ken-ichi Hatano, Yusuke Kato, Yoriko Sawano, Ken-ichi Miyazono, Koji Nagata and Masaru Tanokura

      Version of Record online: 1 DEC 2005 | DOI: 10.1002/prot.20778

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