Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

1 March 2006

Volume 62, Issue 4

Pages 833–1143

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Inferring protein interactions from experimental data by association probabilistic method (pages 833–837)

      Luonan Chen, Ling-Yun Wu, Yong Wang and Xiang-Sun Zhang

      Version of Record online: 4 JAN 2006 | DOI: 10.1002/prot.20783

    2. The histone database: A comprehensive resource for histones and histone fold-containing proteins (pages 838–842)

      Leonardo Mariño-Ramírez, Benjamin Hsu, Andreas D. Baxevanis and David Landsman

      Version of Record online: 12 DEC 2005 | DOI: 10.1002/prot.20814

  2. Research Articles

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations (pages 843–851)

      Michael C. Baran, Hunter N. B. Moseley, James M. Aramini, Marvin J. Bayro, Daniel Monleon, Jessica Y. Locke and Gaetano T. Montelione

      Version of Record online: 4 JAN 2006 | DOI: 10.1002/prot.20840

    2. Evaluating the quality of NMR structures by local density of protons (pages 852–864)

      Yih-En Andrew Ban, Johannes Rudolph, Pei Zhou and Herbert Edelsbrunner

      Version of Record online: 9 DEC 2005 | DOI: 10.1002/prot.20811

    3. Assessing a novel approach for predicting local 3D protein structures from sequence (pages 865–880)

      Cristina Benros, Alexandre G. de Brevern, Catherine Etchebest and Serge Hazout

      Version of Record online: 29 DEC 2005 | DOI: 10.1002/prot.20815

    4. Domain interactions direct misfolding and amyloid formation of yeast phosphoglycerate kinase (pages 909–917)

      Szabolcs Osváth, Márta Jäckel, Gergely Agócs, Péter Závodszky, Gottfried Köhler and Judit Fidy

      Version of Record online: 13 DEC 2005 | DOI: 10.1002/prot.20823

    5. Folding and amyloid-fibril formation for a series of human stefins' chimeras: Any correlation? (pages 918–927)

      Manca Kenig, Saša Jenko-Kokalj, Magda Tušek-Žnidarič, Maruša Pompe-Novak, Gregor Gunčar, Dušan Turk, Jonathan P. Waltho, Rosemarie A. Staniforth, Franc Avbelj and Eva Žerovnik

      Version of Record online: 9 DEC 2005 | DOI: 10.1002/prot.20812

    6. A folding inhibitor of the HIV-1 protease (pages 928–933)

      R. A. Broglia, D. Provasi, F. Vasile, G. Ottolina, R. Longhi and G. Tiana

      Version of Record online: 29 DEC 2005 | DOI: 10.1002/prot.20849

    7. PSI-DOCK: Towards highly efficient and accurate flexible ligand docking (pages 934–946)

      Jianfeng Pei, Qi Wang, Zhenming Liu, Qingliang Li, Kun Yang and Luhua Lai

      Version of Record online: 4 JAN 2006 | DOI: 10.1002/prot.20790

    8. Structural variation and immune recognition of the P1.2 subtype meningococcal antigen (pages 947–955)

      Christos Tzitzilonis, Stephen M. Prince, Richard F. Collins, Mark Achtman, Ian M. Feavers, Martin C. J. Maiden and Jeremy P. Derrick

      Version of Record online: 21 DEC 2005 | DOI: 10.1002/prot.20800

    9. Accounting for loop flexibility during protein–protein docking (pages 956–969)

      Karine Bastard, Chantal Prévost and Martin Zacharias

      Version of Record online: 21 DEC 2005 | DOI: 10.1002/prot.20770

    10. Solvent participation in Serratia marcescens endonuclease complexes (pages 982–995)

      Chuanying Chen, Brian W. Beck, Kurt Krause and B. Montgomery Pettitt

      Version of Record online: 14 DEC 2005 | DOI: 10.1002/prot.20694

    11. Energetics of the native and non-native states of the glycophorin transmembrane helix dimer (pages 996–1009)

      Madhusoodanan Mottamal, Jinming Zhang and Themis Lazaridis

      Version of Record online: 4 JAN 2006 | DOI: 10.1002/prot.20844

    12. Multipass membrane protein structure prediction using Rosetta (pages 1010–1025)

      Vladimir Yarov-Yarovoy, Jack Schonbrun and David Baker

      Version of Record online: 21 DEC 2005 | DOI: 10.1002/prot.20817

    13. Directed evolution of the epidermal growth factor receptor extracellular domain for expression in yeast (pages 1026–1035)

      Yong-Sung Kim, Rashna Bhandari, Jennifer R. Cochran, John Kuriyan and K. Dane Wittrup

      Version of Record online: 14 DEC 2005 | DOI: 10.1002/prot.20618

    14. Site-specific transamidation and deamidation of the small heat-shock protein Hsp20 by tissue transglutaminase (pages 1044–1052)

      Sandor Boros, Emma Åhrman, Lisa Wunderink, Bram Kamps, Wilfried W. de Jong, Wilbert C. Boelens and Cecilia Sundby Emanuelsson

      Version of Record online: 29 DEC 2005 | DOI: 10.1002/prot.20837

    15. Generalized correlation for biomolecular dynamics (pages 1053–1061)

      Oliver F. Lange and Helmut Grubmüller

      Version of Record online: 14 DEC 2005 | DOI: 10.1002/prot.20784

    16. Insights on HIV-1 Tat:P/CAF bromodomain molecular recognition from in vivo experiments and molecular dynamics simulations (pages 1062–1073)

      Sergio Pantano, Alessandro Marcello, Aldo Ferrari, Daniele Gaudiosi, Arianna Sabò, Vittorio Pellegrini, Fabio Beltram, Mauro Giacca and Paolo Carloni

      Version of Record online: 16 DEC 2005 | DOI: 10.1002/prot.20805

    17. Influence of the disulfide bond configuration on the dynamics of the spin label attached to cytochrome c (pages 1088–1100)

      Krzysztof Murzyn, Tomasz Róg, Wojciech Blicharski, Małgorzata Dutka, Janusz Pyka, Sebastian Szytula and Wojciech Froncisz

      Version of Record online: 4 JAN 2006 | DOI: 10.1002/prot.20838

    18. Untangling influences of hydrophobicity on protein sequences and structures (pages 1101–1106)

      Mehdi Yahyanejad, Christopher B. Burge and Mehran Kardar

      Version of Record online: 22 DEC 2005 | DOI: 10.1002/prot.20775

  3. Structure Notes

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. You have free access to this content
      Crystal structure of alanyl-tRNA synthetase editing-domain homolog (PH0574) from a hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 Å resolution (pages 1133–1137)

      Jun Ishijima, Yumiko Uchida, Chizu Kuroishi, Chizuru Tuzuki, Naoko Takahashi, Nobuo Okazaki, Katsuhide Yutani and Masashi Miyano

      Version of Record online: 22 DEC 2005 | DOI: 10.1002/prot.20760

    2. You have free access to this content
      Crystal structure of HP0242, a hypothetical protein from Helicobacter pylori with a novel fold (pages 1138–1143)

      Jia-Yin Tsai, Bo-Tsang Chen, Hui-Chun Cheng, Hsin-Yi Chen, Nai-Wan Hsaio, Ping-Chiang Lyu and Yuh-Ju Sun

      Version of Record online: 4 JAN 2006 | DOI: 10.1002/prot.20864

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