Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

1 October 2006

Volume 65, Issue 1

Pages 1–257

  1. Reviews

    1. Top of page
    2. Reviews
    3. Short Communications
    4. Prediction Report
    5. Research Articles
    6. Structure Notes
    1. A practical overview of protein disorder prediction methods (pages 1–14)

      François Ferron, Sonia Longhi, Bruno Canard and David Karlin

      Article first published online: 19 JUL 2006 | DOI: 10.1002/prot.21075

    2. Protein–ligand docking: Current status and future challenges (pages 15–26)

      Sérgio Filipe Sousa, Pedro Alexandrino Fernandes and Maria João Ramos

      Article first published online: 21 JUL 2006 | DOI: 10.1002/prot.21082

  2. Short Communications

    1. Top of page
    2. Reviews
    3. Short Communications
    4. Prediction Report
    5. Research Articles
    6. Structure Notes
    1. Starch-synthase III family encodes a tandem of three starch-binding domains (pages 27–31)

      Nicolás Palopoli, María Victoria Busi, María Silvina Fornasari, Diego Gomez-Casati, Rodolfo Ugalde and Gustavo Parisi

      Article first published online: 21 JUL 2006 | DOI: 10.1002/prot.21007

    2. A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications (pages 32–39)

      Manoj Tyagi, Venkataraman S. Gowri, Narayanaswamy Srinivasan, Alexandre G. de Brevern and Bernard Offmann

      Article first published online: 7 AUG 2006 | DOI: 10.1002/prot.21087

  3. Prediction Report

    1. Top of page
    2. Reviews
    3. Short Communications
    4. Prediction Report
    5. Research Articles
    6. Structure Notes
  4. Research Articles

    1. Top of page
    2. Reviews
    3. Short Communications
    4. Prediction Report
    5. Research Articles
    6. Structure Notes
    1. Predicting G-protein coupled receptors–G-protein coupling specificity based on autocross-covariance transform (pages 55–60)

      Yanzhi Guo, Menglong Li, Minchun Lu, Zhining Wen and Zhongtian Huang

      Article first published online: 24 JUL 2006 | DOI: 10.1002/prot.21097

    2. Predicting transmembrane β-barrels and interstrand residue interactions from sequence (pages 61–74)

      J. Waldispühl, Bonnie Berger, Peter Clote and Jean-Marc Steyaert

      Article first published online: 20 JUL 2006 | DOI: 10.1002/prot.21046

    3. Exploring the environmental preference of weak interactions in (α/β)8 barrel proteins (pages 75–86)

      S. Chakkaravarthi, M. Madan Babu, M. Michael Gromiha, G. Jayaraman and R. Sethumadhavan

      Article first published online: 11 JUL 2006 | DOI: 10.1002/prot.21067

    4. Comparison of protein active site structures for functional annotation of proteins and drug design (pages 124–135)

      Robert Powers, Jennifer C. Copeland, Katherine Germer, Kelly A. Mercier, Viswanathan Ramanathan and Peter Revesz

      Article first published online: 21 JUL 2006 | DOI: 10.1002/prot.21092

    5. Protein under pressure: Molecular dynamics simulation of the arc repressor (pages 136–144)

      Daniel Trzesniak, Roberto D. Lins and Wilfred F. van Gunsteren

      Article first published online: 17 AUG 2006 | DOI: 10.1002/prot.21034

    6. Characterization of the residual structure in the unfolded state of the Δ131Δ fragment of staphylococcal nuclease (pages 145–152)

      Christopher J. Francis, Kresten Lindorff-Larsen, Robert B. Best and Michele Vendruscolo

      Article first published online: 21 JUL 2006 | DOI: 10.1002/prot.21077

    7. Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations (pages 164–179)

      Amarda Shehu, Cecilia Clementi and Lydia E. Kavraki

      Article first published online: 17 AUG 2006 | DOI: 10.1002/prot.21060

    8. Structures of soluble amyloid oligomers from computer simulations (pages 180–191)

      Adrien Melquiond, Normand Mousseau and Philippe Derreumaux

      Article first published online: 7 AUG 2006 | DOI: 10.1002/prot.21100

    9. Multi-template approach to modeling engineered disulfide bonds (pages 192–202)

      Jean-Luc Pellequer and Shu-wen W. Chen

      Article first published online: 28 JUN 2006 | DOI: 10.1002/prot.21059

    10. Crystal structures of the PLP- and PMP-bound forms of BtrR, a dual functional aminotransferase involved in butirosin biosynthesis (pages 220–230)

      Bojana Popovic, Xiao Tang, Dimitri Y. Chirgadze, Fanglu Huang, Tom L. Blundell and Jonathan B. Spencer

      Article first published online: 7 AUG 2006 | DOI: 10.1002/prot.21076

  5. Structure Notes

    1. Top of page
    2. Reviews
    3. Short Communications
    4. Prediction Report
    5. Research Articles
    6. Structure Notes
    1. You have free access to this content
      The crystal structure of XC1739: A putative multiple antibiotic-resistance repressor (MarR) from Xanthomonas campestris at 1.8 Å resolution (pages 239–242)

      Ko-Hsin Chin, Zhi-Le Tu, Juo-Ning Li, Chia-Cheng Chou, Andrew H.-J. Wang and Shan-Ho Chou

      Article first published online: 21 JUL 2006 | DOI: 10.1002/prot.21017

    2. You have free access to this content
      Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 Å resolution reveals a new fold (pages 243–248)

      Robert Schwarzenbacher, Daniel McMullan, S. Sri Krishna, Qingping Xu, Mitchell D. Miller, Jaume M. Canaves, Marc-André Elsliger, Ross Floyd, Slawomir K. Grzechnik, Lukasz Jaroszewski, Heath E. Klock, Eric Koesema, John S. Kovarik, Andreas Kreusch, Peter Kuhn, Timothy M. McPhillips, Andrew T. Morse, Kevin Quijano, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Guenter Wolf, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Article first published online: 24 JUL 2006 | DOI: 10.1002/prot.21058

    3. You have free access to this content
      Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 Å resolution (pages 249–254)

      Irimpan I. Mathews, S. Sri Krishna, Robert Schwarzenbacher, Daniel McMullan, Lukasz Jaroszewski, Mitchell D. Miller, Polat Abdubek, Sanjay Agarwalla, Eileen Ambing, Herbert L. Axelrod, Jaume M. Canaves, Dennis Carlton, Hsiu-Ju Chiu, Thomas Clayton, Michael DiDonato, Lian Duan, Marc-André Elsliger, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Justin Haugen, Kevin K. Jin, Heath E. Klock, Eric Koesema, John S. Kovarik, Andreas Kreusch, Peter Kuhn, Inna Levin, Andrew T. Morse, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Jessica Paulsen, Kevin Quijano, Ron Reyes, Christopher L. Rife, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Aprilfawn White, Guenter Wolf, Qingping Xu, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Article first published online: 24 JUL 2006 | DOI: 10.1002/prot.21024

    4. Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis (pages 255–257)

      Shyamala S. Rajan, Xiaojing Yang, Ludmilla Shuvalova, Frank Collart and Wayne F. Anderson

      Article first published online: 21 JUL 2006 | DOI: 10.1002/prot.21073

SEARCH

SEARCH BY CITATION