Proteins: Structure, Function, and Bioinformatics

Cover image for Vol. 65 Issue 3

15 November 2006

Volume 65, Issue 3

Pages 527–786

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Comparative structural analysis of a novel glutathioneS-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 Å resolution (pages 527–537)

      Mickey Kosloff, Gye Won Han, S. Sri Krishna, Robert Schwarzenbacher, Marc Fasnacht, Marc-André Elsliger, Polat Abdubek, Sanjay Agarwalla, Eileen Ambing, Tamara Astakhova, Herbert L. Axelrod, Jaume M. Canaves, Dennis Carlton, Hsiu-Ju Chiu, Thomas Clayton, Michael DiDonato, Lian Duan, Julie Feuerhelm, Carina Grittini, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Justin Haugen, Lukasz Jaroszewski, Kevin K. Jin, Hope Johnson, Heath E. Klock, Mark W. Knuth, Eric Koesema, Andreas Kreusch, Peter Kuhn, Inna Levin, Daniel McMullan, Mitchell D. Miller, Andrew T. Morse, Kin Moy, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Rebecca Page, Jessica Paulsen, Kevin Quijano, Ron Reyes, Christopher L. Rife, Eric Sims, Glen Spraggon, Vandana Sridhar, Raymond C. Stevens, Henry van den Bedem, Jeff Velasquez, Aprilfawn White, Guenter Wolf, Qingping Xu, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Article first published online: 20 SEP 2006 | DOI: 10.1002/prot.21130

  2. Research Articles

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Computational and experimental approaches for assessing the interactions between the model calycin β-lactoglobulin and two antibacterial fluoroquinolones (pages 555–567)

      Ivano Eberini, Piercarlo Fantucci, Alessandro Guerini Rocco, Elisabetta Gianazza, Lara Galluccio, Daniela Maggioni, Ilaria Dal Ben, Monica Galliano, Rosalba Mazzitello, Noura Gaiji and Tiziana Beringhelli

      Article first published online: 25 SEP 2006 | DOI: 10.1002/prot.21109

    2. Generalized modeling of enzyme–ligand interactions using proteochemometrics and local protein substructures (pages 568–579)

      Helena Strömbergsson, Andriy Kryshtafovych, Peteris Prusis, Krzysztof Fidelis, Jarl E. S. Wikberg, Jan Komorowski and Torgeir R. Hvidsten

      Article first published online: 31 AUG 2006 | DOI: 10.1002/prot.21163

    3. Prediction of EF-hand calcium-binding proteins and analysis of bacterial EF-hand proteins (pages 643–655)

      Yubin Zhou, Wei Yang, Michael Kirberger, Hsiau-Wei Lee, Gayatri Ayalasomayajula and Jenny J. Yang

      Article first published online: 15 SEP 2006 | DOI: 10.1002/prot.21139

    4. Structural dynamics of the mitochondrial ADP/ATP carrier revealed by molecular dynamics simulation studies (pages 681–691)

      M. Falconi, G. Chillemi, D. Di Marino, I. D'Annessa, B. Morozzo della Rocca, L. Palmieri and A. Desideri

      Article first published online: 20 SEP 2006 | DOI: 10.1002/prot.21102

    5. Comparison of multiple Amber force fields and development of improved protein backbone parameters (pages 712–725)

      Viktor Hornak, Robert Abel, Asim Okur, Bentley Strockbine, Adrian Roitberg and Carlos Simmerling

      Article first published online: 15 SEP 2006 | DOI: 10.1002/prot.21123

    6. Characterization and tissue-specific expression of two lepidopteran farnesyl diphosphate synthase homologs: Implications for the biosynthesis of ethyl-substituted juvenile hormones (pages 742–758)

      Michel Cusson, Catherine Béliveau, Stephanie E. Sen, Sophie Vandermoten, Robert G. Rutledge, Don Stewart, Frédéric Francis, Éric Haubruge, Peter Rehse, David J. Huggins, Ashley P.G. Dowling and Guy H. Grant

      Article first published online: 13 SEP 2006 | DOI: 10.1002/prot.21057

  3. Structure Notes

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. NMR structure of protein PA2021 from Pseudomonas aeruginosa (pages 767–770)

      Yu-Chieh Lin, Gaohua Liu, Yang Shen, Claudia Bertonati, Adelinda Yee, Barry Honig, Cheryl H. Arrowsmith and Thomas Szyperski

      Article first published online: 22 AUG 2006 | DOI: 10.1002/prot.21098

    2. Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 Å resolution reveals a new fold with a novel active site (pages 771–776)

      Michael DiDonato, S. Sri Krishna, Robert Schwarzenbacher, Daniel McMullan, Sanjay Agarwalla, Scott M. Brittain, Mitchell D. Miller, Polat Abdubek, Eileen Ambing, Herbert L. Axelrod, Jaume M. Canaves, Hsiu-Ju Chiu, Ashley M. Deacon, Lian Duan, Marc-André Elsliger, Adam Godzik, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Justin Haugen, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Eric Koesema, Andreas Kreusch, Peter Kuhn, Scott A. Lesley, Inna Levin, Andrew T. Morse, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Jessica Paulsen, Kevin Quijano, Ron Reyes, Christopher L. Rife, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Aprilfawn White, Guenter Wolf, Qingping Xu, Keith O. Hodgson, John Wooley and Ian A. Wilson

      Article first published online: 22 AUG 2006 | DOI: 10.1002/prot.20978

    3. Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 Å resolution reveals a fold similar to the Ran-binding protein Mog1p (pages 777–782)

      Qingping Xu, S. Sri Krishna, Daniel McMullan, Robert Schwarzenbacher, Mitchell D. Miller, Polat Abdubek, Sanjay Agarwalla, Eileen Ambing, Tamara Astakhova, Herbert L. Axelrod, Jaume M. Canaves, Dennis Carlton, Hsiu-Ju Chiu, Thomas Clayton, Michael DiDonato, Lian Duan, Marc-André Elsliger, Julie Feuerhelm, Slawomir K. Grzechnik, Joanna Hale, Eric Hampton, Gye Won Han, Justin Haugen, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Eric Koesema, Andreas Kreusch, Peter Kuhn, Andrew T. Morse, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Jessica Paulsen, Kevin Quijano, Ron Reyes, Christopher L. Rife, Glen Spraggon, Raymond C. Stevens, Henry van den Bedem, Aprilfawn White, Guenter Wolf, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Article first published online: 31 AUG 2006 | DOI: 10.1002/prot.21015

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