Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

15 May 2008

Volume 71, Issue 3

Pages 1057–1596

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Direct insight into insulin aggregation by 2D NMR complemented by PFGSE NMR (pages 1057–1065)

      Wojciech Bocian, Jerzy Sitkowski, Anna Tarnowska, Elżbieta Bednarek, Robert Kawȩcki, Wiktor Koźmiński and Lech Kozerski

      Article first published online: 7 FEB 2008 | DOI: 10.1002/prot.21969

  2. Research Articles

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Use of L-asparagine and N-phosphonacetyl-L-asparagine to investigate the linkage of catalysis and homotropic cooperativity in E. coli aspartate transcarbomoylase (pages 1088–1096)

      James P. Cardia, Joby Eldo, Jiarong Xia, Elizabeth M. O'Day, Hiro Tsuruta, Kimberly R. Gryncel and Evan R. Kantrowitz

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21760

    2. Modeling ensembles of transmembrane β-barrel proteins (pages 1097–1112)

      Jérôme Waldispühl, Charles W. O'Donnell, Srinivas Devadas, Peter Clote and Bonnie Berger

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21788

    3. Clustering orthologous proteins across phylogenetically distant species (pages 1113–1122)

      Sunshin Kim, Jaewoo Kang, Yong Je Chung, Jinyan Li and Keun Ho Ryu

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21792

    4. Intrinsically disordered protein from a pathogenic mesophile Mycobacterium tuberculosis adopts structured conformation at high temperature (pages 1123–1133)

      Niti Kumar, Swati Shukla, Sanjiv Kumar, Anju Suryawanshi, Uma Chaudhry, Srinivasan Ramachandran and Souvik Maiti

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21798

    5. X-ray analysis of phosphoglycerate kinase 2, a sperm-specific isoform from Mus musculus (pages 1134–1144)

      Gregory M. Sawyer, Arthur F. Monzingo, Ethan C. Poteet, Deborah A. O'Brien and Jon D. Robertus

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21801

    6. Crystal structure of an archaeal specific DNA-binding protein (Ape10b2) from Aeropyrum pernix K1 (pages 1156–1162)

      Thirumananseri Kumarevel, Keiko Sakamoto, Subash C. B. Gopinath, Akeo Shinkai, Penmetcha K. R. Kumar and Shigeyuki Yokoyama

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21807

    7. Ranking predicted protein structures with support vector regression (pages 1175–1182)

      Jian Qiu, Will Sheffler, David Baker and William Stafford Noble

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21809

    8. New insights of membrane environment effects on MscL channel mechanics from theoretical approaches (pages 1183–1196)

      Gaëlle Debret, Hélène Valadié, Andreas Maximilian Stadler and Catherine Etchebest

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21810

    9. Crystal structure of a secondary vitamin D3 binding site of milk β-lactoglobulin (pages 1197–1210)

      Ming-Chi Yang, Hong-Hsiang Guan, Ming-Yih Liu, Yih-Hung Lin, Jinn-Moon Yang, Wen-Liang Chen, Chun-Jung Chen and Simon J. T. Mao

      Article first published online: 14 NOV 2007 | DOI: 10.1002/prot.21811

    10. CO escape from myoglobin with metadynamics simulations (pages 1231–1236)

      Matteo Ceccarelli, Roberto Anedda, Mariano Casu and Paolo Ruggerone

      Article first published online: 27 NOV 2007 | DOI: 10.1002/prot.21817

    11. Modeling of metal interaction geometries for protein–ligand docking (pages 1237–1254)

      Birte Seebeck, Ingo Reulecke, Andreas Kämper and Matthias Rarey

      Article first published online: 27 NOV 2007 | DOI: 10.1002/prot.21818

    12. Stabilization of antibody structure upon association to a human carbonic anhydrase IX epitope studied by X-ray crystallography, microcalorimetry, and molecular dynamics simulations (pages 1275–1287)

      Vlastimil Král, Pavel Mader, Renata Collard, Milan Fábry, Magdaléna Hořejší, Pavlína Řezáčová, Milan Kožíšek, Jan Závada, Juraj Sedláček, Lubomír Rulíšek and Jiří Brynda

      Article first published online: 27 NOV 2007 | DOI: 10.1002/prot.21821

    13. Crystallographic and computational studies on 4-phenyl-N-(β-D-glucopyranosyl)-1H-1,2,3-triazole-1-acetamide, an inhibitor of glycogen phosphorylase: Comparison with α-D-glucose, N-acetyl-β-D-glucopyranosylamine and N-benzoyl-N′-β-D-glucopyranosyl urea binding (pages 1307–1323)

      Kyra-Melinda Alexacou, Joseph M. Hayes, Costas Tiraidis, Spyros E. Zographos, Demetres D. Leonidas, Evangelia D. Chrysina, Georgios Archontis, Nikos G. Oikonomakos, Jashuva V. Paul, Babu Varghese and Duraikkannu Loganathan

      Article first published online: 27 NOV 2007 | DOI: 10.1002/prot.21837

    14. The point mutation A34F causes dimerization of GB1 (pages 1420–1431)

      JunGoo Jee, In-Ja L. Byeon, John M. Louis and Angela M. Gronenborn

      Article first published online: 12 DEC 2007 | DOI: 10.1002/prot.21831

    15. Pressure-induced changes in the solution structure of the GB1 domain of protein G (pages 1432–1440)

      David J. Wilton, Richard B. Tunnicliffe, Yuji O. Kamatari, Kazuyuki Akasaka and Mike P. Williamson

      Article first published online: 12 DEC 2007 | DOI: 10.1002/prot.21832

    16. Predicting protein interaction interfaces from protein sequences: Case studies of subtilisin and phycocyanin (pages 1461–1474)

      Bin-Bin Xie, Xiu-Lan Chen, Xi-Ying Zhang, Hai-Lun He, Yu-Zhong Zhang and Bai-Cheng Zhou

      Article first published online: 12 DEC 2007 | DOI: 10.1002/prot.21836

    17. Predicting protein homocysteinylation targets based on dihedral strain energy and pKa of cysteines (pages 1475–1483)

      Elayanambi Sundaramoorthy, Souvik Maiti, Samir K. Brahmachari and Shantanu Sengupta

      Article first published online: 12 DEC 2007 | DOI: 10.1002/prot.21846

  3. Structure Notes

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. You have free access to this content
      Crystal structure and possible dimerization of the single RRM of human PABPN1 (pages 1539–1545)

      Honghua Ge, Dongwen Zhou, Shuilong Tong, Yongxiang Gao, Maikun Teng and Liwen Niu

      Article first published online: 14 FEB 2008 | DOI: 10.1002/prot.21973

    2. You have free access to this content
      Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 Å resolution (pages 1546–1552)

      Qingping Xu, Piotr Kozbial, Daniel McMullan, S. Sri Krishna, Scott M. Brittain, Scott B. Ficarro, Michael DiDonato, Mitchell D. Miller, Polat Abdubek, Herbert L. Axelrod, Hsiu-Ju Chiu, Thomas Clayton, Lian Duan, Marc-André Elsliger, Julie Feuerhelm, Slawomir K. Grzechnik, Joanna Hale, Gye Won Han, Lukasz Jaroszewski, Heath E. Klock, Andrew T. Morse, Edward Nigoghossian, Jessica Paulsen, Ron Reyes, Christopher L. Rife, Henry van den Bedem, Aprilfawn White, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Article first published online: 14 FEB 2008 | DOI: 10.1002/prot.21992

    3. You have free access to this content
      Crystal structure and domain characterization of ScpB from Mycobacterium tuberculosis (pages 1553–1556)

      Jeong-Sun Kim, Sujin Lee, Beom Sik Kang, Myung Hee Kim, Heung-Soo Lee and Kyung-Jin Kim

      Article first published online: 25 FEB 2008 | DOI: 10.1002/prot.21981

    4. You have free access to this content
    5. You have free access to this content
      Crystal structure of VC1805, a conserved hypothetical protein from a Vibrio cholerae pathogenicity island, reveals homology to human p32 (pages 1563–1571)

      Md. Arif Sheikh, Jane A. Potter, Kenneth A. Johnson, Robert B. Sim, E. Fidelma Boyd and Garry L. Taylor

      Article first published online: 25 FEB 2008 | DOI: 10.1002/prot.21993

    6. You have free access to this content
    7. You have free access to this content
      Crystal structures of MW1337R and lin2004: Representatives of a novel protein family that adopt a four-helical bundle fold (pages 1589–1596)

      Piotr Kozbial, Qingping Xu, Hsiu-Ju Chiu, Daniel McMullan, S. Sri Krishna, Mitchell D. Miller, Polat Abdubek, Claire Acosta, Tamara Astakhova, Herbert L. Axelrod, Dennis Carlton, Thomas Clayton, Marc Deller, Lian Duan, Ylva Elias, Marc-André Elsliger, Julie Feuerhelm, Slawomir K. Grzechnik, Joanna Hale, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Eric Koesema, Abhinav Kumar, David Marciano, Andrew T. Morse, Kevin D. Murphy, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Ron Reyes, Christopher L. Rife, Glen Spraggon, Christina V. Trout, Henry van den Bedem, Dana Weekes, Aprilfawn White, Guenter Wolf, Chloe Zubieta, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Article first published online: 6 MAR 2008 | DOI: 10.1002/prot.22020

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