Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

July 2008

Volume 72, Issue 1

Pages 1–536

  1. Research Articles

    1. Top of page
    2. Research Articles
    3. Structure Notes
    1. Lipid membrane templates the ordering and induces the fibrillogenesis of Alzheimer's disease amyloid-β peptide (pages 1–24)

      Eva Y. Chi, Canay Ege, Amy Winans, Jaroslaw Majewski, Guohui Wu, Kristian Kjaer and Ka Yee C. Lee

      Version of Record online: 10 JAN 2008 | DOI: 10.1002/prot.21887

    2. Development of new laccases by directed evolution: Functional and computational analyses (pages 25–34)

      Giovanna Festa, Flavia Autore, Franca Fraternali, Paola Giardina and Giovanni Sannia

      Version of Record online: 10 JAN 2008 | DOI: 10.1002/prot.21889

    3. Crystal structure and stereochemical studies of KD(P)G aldolase from Thermoproteus tenax (pages 35–43)

      Anuschka Pauluhn, Hatim Ahmed, Esben Lorentzen, Sebastian Buchinger, Dietmar Schomburg, Bettina Siebers and Ehmke Pohl

      Version of Record online: 10 JAN 2008 | DOI: 10.1002/prot.21890

    4. Role of the amino acid sequence in domain swapping of the B1 domain of protein G (pages 88–104)

      Fernanda L. Sirota, Stephanie Héry-Huynh, Sebastian Maurer-Stroh and Shoshana J. Wodak

      Version of Record online: 10 JAN 2008 | DOI: 10.1002/prot.21901

    5. On defining the dynamics of hydrophobic patches on protein surfaces (pages 105–114)

      Philip Lijnzaad, K. Anton Feenstra, Jaap Heringa and Frank C. P. Holstege

      Version of Record online: 10 JAN 2008 | DOI: 10.1002/prot.21924

    6. Comprehensive analysis of the helix-X-helix motif in soluble proteins (pages 115–135)

      Julie Deville, Julien Rey and Marie Chabbert

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21879

    7. Helix formation is a dynamical bottleneck in the recovery reaction of Photoactive Yellow Protein (pages 136–149)

      Jocelyne Vreede, Klaas J. Hellingwerf and Peter G. Bolhuis

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21902

    8. Folding and dimerization of the ionic peptide EAK 16-IV (pages 150–162)

      Zhiqiang Yan, Jun Wang and Wei Wang

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21903

    9. Analysis and prediction of protein local structure based on structure alphabets (pages 163–172)

      Qiwen Dong, Xiaolong Wang, Lei Lin and Yadong Wang

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21904

    10. Protein structure modeling indicates hexahistidine-tag interference with enzyme activity (pages 173–183)

      Anna-Carolin Freydank, Wolfgang Brandt and Birgit Dräger

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21905

    11. Structure-based classification of 45 FK506-binding proteins (pages 197–208)

      J. A. Somarelli, S. Y. Lee, J. Skolnick and R. J. Herrera

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21908

    12. The insecticidal protein hirsutellin A from the mite fungal pathogen Hirsutella thompsonii is a ribotoxin (pages 217–228)

      Elías Herrero-Galán, Javier Lacadena, Álvaro Martínez del Pozo, Drion G. Boucias, Nieves Olmo, Mercedes Oñaderra and José G. Gavilanes

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21910

    13. Rational design of peptides active against the gram positive bacteria Staphylococcus aureus (pages 229–239)

      Céline Landon, Florent Barbault, Michèle Legrain, Marc Guenneugues and Françoise Vovelle

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21912

    14. Mechanism of inhibition of wt-dihydrofolate reductase from E. coli by tea epigallocatechin-gallate (pages 240–251)

      Michele Spina, Massimiliano Cuccioloni, Matteo Mozzicafreddo, Francesca Montecchia, Stefania Pucciarelli, Anna Maria Eleuteri, Evandro Fioretti and Mauro Angeletti

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21914

    15. Cloning and characterization of a caesalpinoid (Chamaecrista fasciculata) hemoglobin: The structural transition from a nonsymbiotic hemoglobin to a leghemoglobin (pages 252–260)

      Sabarinathan K. Gopalasubramaniam, Frank Kovacs, Fernando Violante-Mota, Paul Twigg, Raúl Arredondo-Peter and Gautam Sarath

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21917

    16. Unfolding and aggregation of transthyretin by the truncation of 50 N-terminal amino acids (pages 261–269)

      Mineyuki Mizuguchi, Ayumi Hayashi, Makoto Takeuchi, Mizuki Dobashi, Yoshihiro Mori, Hiroyuki Shinoda, Tomoyasu Aizawa, Makoto Demura and Keiichi Kawano

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21919

    17. Acidic range titration of HEWL using a constant-pH molecular dynamics method (pages 289–298)

      Miguel Machuqueiro and António M. Baptista

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21923

    18. Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions (pages 313–322)

      Yasuhiro Nonaka, Tomoyasu Aizawa, Daisuke Akieda, Masanori Yasui, Masahiro Watanabe, Nobuhisa Watanabe, Isao Tanaka, Masakatsu Kamiya, Mineyuki Mizuguchi, Makoto Demura and Keiichi Kawano

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21927

    19. Detailed conformational dynamics of juxtamembrane region and activation loop in c-Kit kinase activation process (pages 323–332)

      Jun Zou, Yi-Dong Wang, Fan-Xin Ma, Ming-Li Xiang, Bing Shi, Yu-Quan Wei and Sheng-Yong Yang

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21928

    20. Probing electric fields in proteins in solution by NMR spectroscopy (pages 333–343)

      Mathias A. S. Hass, Malene Ringkjøbing Jensen and Jens J. Led

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21929

    21. The size of the intermolecular energy funnel in protein–protein interactions (pages 344–352)

      Jagtar Hunjan, Andrey Tovchigrechko, Ying Gao and Ilya A. Vakser

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21930

    22. Molecular dynamics study of Pseudomonas aeruginosa lectin-II complexed with monosaccharides (pages 382–392)

      Navnit Kumar Mishra, Petr Kulhánek, Lenka Šnajdrová, Martin Petřek, Anne Imberty and Jaroslav Koča

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21935

    23. Identifying stabilizing key residues in proteins using interresidue interaction energy matrix (pages 402–413)

      Lada Bendová-Biedermannová, Pavel Hobza and Jiří Vondrášek

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21938

    24. Structural properties of the DNA-bound form of a novel tandem repeat DNA-binding domain, STPR (pages 414–426)

      Shin Saito, Takuya Yokoyama, Tomoyasu Aizawa, Kyosuke Kawaguchi, Takeshi Yamaki, Daisuke Matsumoto, Tatsuro Kamijima, Masakatsu Kamiya, Yasuhiro Kumaki, Mineyuki Mizuguchi, Sigeharu Takiya, Makoto Demura and Keiichi Kawano

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21939

    25. Real-value prediction of backbone torsion angles (pages 427–433)

      Bin Xue, Ofer Dor, Eshel Faraggi and Yaoqi Zhou

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21940

    26. Protein kinase C isozymes and their selectivity towards ruboxistaurin (pages 447–460)

      Sishi Tang, Victor Xiao, Lianhu Wei, Catharine I. Whiteside and Lakshmi P. Kotra

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21942

    27. Protein domain annotation with integration of heterogeneous information sources (pages 461–473)

      Xing-Ming Zhao, Yong Wang, Luonan Chen and Kazuyuki Aihara

      Version of Record online: 23 JAN 2008 | DOI: 10.1002/prot.21943

  2. Structure Notes

    1. Top of page
    2. Research Articles
    3. Structure Notes
    1. You have free access to this content
      RhoB can adopt a Mg2+ free conformation prior to GEF binding (pages 498–505)

      Meera Soundararajan, Andrew Turnbull, Oleg Fedorov, Catrine Johansson and Declan A. Doyle

      Version of Record online: 7 APR 2008 | DOI: 10.1002/prot.22017

    2. You have free access to this content
      The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an α/β-fold characteristic of nucleotide-utilizing enzymes (pages 506–509)

      Kinlin L. Chao, Kap Lim, Christopher Lehmann, Victoria Doseeva, Andrew J. Howard, Fredrick P. Schwarz and Osnat Herzberg

      Version of Record online: 7 APR 2008 | DOI: 10.1002/prot.22046

    3. You have free access to this content
      Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon (pages 510–518)

      Richard D. Bunker, Joanna L. McKenzie, Edward N. Baker and Vickery L. Arcus

      Version of Record online: 8 APR 2008 | DOI: 10.1002/prot.22048

    4. You have free access to this content
      Crystal structure of the methyltransferase domain of human TARBP1 (pages 519–525)

      Hong Wu, Jinrong Min, Hong Zeng and Alexander N. Plotnikov

      Version of Record online: 15 APR 2008 | DOI: 10.1002/prot.22065

    5. Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis (pages 526–530)

      James M. Aramini, Seema Sharma, Yuanpeng J. Huang, G. V. T. Swapna, Chi Kent Ho, Karishma Shetty, Kellie Cunningham, Li-Chung Ma, Li Zhao, Leah A. Owens, Mei Jiang, Rong Xiao, Jinfeng Liu, Michael C. Baran, Thomas B. Acton, Burkhard Rost and Gaetano T. Montelione

      Version of Record online: 22 APR 2008 | DOI: 10.1002/prot.22064

    6. You have free access to this content

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