Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

15 August 2008

Volume 72, Issue 3

Pages 811–1107

  1. Research Articles

    1. Top of page
    2. Research Articles
    3. Structure Notes
    1. Effect of an amyloidogenic sequence attached to yellow fluorescent protein (pages 811–821)

      Daizo Hamada, Kouhei Tsumoto, Makoto Sawara, Naoki Tanaka, Kumiko Nakahira, Kentaro Shiraki and Itaru Yanagihara

      Version of Record online: 7 FEB 2008 | DOI: 10.1002/prot.21971

    2. Apo-parvalbumin as an intrinsically disordered protein (pages 822–836)

      Sergei E. Permyakov, Anush G. Bakunts, Alexander I. Denesyuk, Ekaterina L. Knyazeva, Vladimir N. Uversky and Eugene A. Permyakov

      Version of Record online: 7 FEB 2008 | DOI: 10.1002/prot.21974

    3. Docking analysis of transient complexes: Interaction of ferredoxin-NADP+ reductase with ferredoxin and flavodoxin (pages 848–862)

      Milagros Medina, Ruben Abagyan, Carlos Gómez-Moreno and Juan Fernandez-Recio

      Version of Record online: 7 FEB 2008 | DOI: 10.1002/prot.21979

    4. Induced fit in liver X receptor beta: A molecular dynamics-based investigation (pages 873–882)

      Alexandre Beautrait, Arnaud S. Karaboga, Michel Souchet and Bernard Maigret

      Version of Record online: 14 FEB 2008 | DOI: 10.1002/prot.21977

    5. Compact dimension of denatured states of staphylococcal nuclease (pages 901–909)

      C.-Y. Chow, Ming-Chya Wu, Huey-Jen Fang, Chin-Kun Hu, Hueih-Min Chen and Tian-Yow Tsong

      Version of Record online: 14 FEB 2008 | DOI: 10.1002/prot.21985

    6. A template-finding algorithm and a comprehensive benchmark for homology modeling of proteins (pages 910–928)

      Brinda Kizhakke Vallat, Jaroslaw Pillardy and Ron Elber

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21976

    7. Deriving protein dynamical properties from weighted protein contact number (pages 929–935)

      Chih-Peng Lin, Shao-Wei Huang, Yan-Long Lai, Shih-Chung Yen, Chien-Hua Shih, Chih-Hao Lu, Cuen-Chao Huang and Jenn-Kang Hwang

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21983

    8. Glutathione reductase and thioredoxin reductase at the crossroad: The structure of Schistosoma mansoni thioredoxin glutathione reductase (pages 936–945)

      Francesco Angelucci, Adriana E. Miele, Giovanna Boumis, Daniela Dimastrogiovanni, Maurizio Brunori and Andrea Bellelli

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21986

    9. Structural properties of the human respiratory syncytial virus P protein: Evidence for an elongated homotetrameric molecule that is the smallest orthologue within the family of paramyxovirus polymerase cofactors (pages 946–958)

      María T. Llorente, Ian A. Taylor, Eduardo López-Viñas, Paulino Gomez-Puertas, Lesley J. Calder, Blanca García-Barreno and José A. Melero

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21988

    10. Toward better refinement of comparative models: Predicting loops in inexact environments (pages 959–971)

      Benjamin D. Sellers, Kai Zhu, Suwen Zhao, Richard A. Friesner and Matthew P. Jacobson

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21990

    11. The conserved salt bridge linking two C-terminal β/α units in homodimeric triosephosphate isomerase determines the folding rate of the monomer (pages 972–979)

      César A. Reyes-López, Edith González-Mondragón, Claudia G. Benítez-Cardoza, María E. Chánez-Cárdenas, Nallely Cabrera, Ruy Pérez-Montfort and Andrés Hernández-Arana

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21994

    12. NMR structure and dynamics of human ephrin-B2 ectodomain: The functionally critical C-D and G-H loops are highly dynamic in solution (pages 1019–1029)

      Xiaoyuan Ran, Haina Qin, Jingxian Liu, Jing-Song Fan, Jiahai Shi and Jianxing Song

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21999

    13. An integrated approach to inferring gene–disease associations in humans (pages 1030–1037)

      Predrag Radivojac, Kang Peng, Wyatt T. Clark, Brandon J. Peters, Amrita Mohan, Sean M. Boyle and Sean D. Mooney

      Version of Record online: 25 FEB 2008 | DOI: 10.1002/prot.21989

    14. All-atom replica exchange molecular simulation of protein BBL (pages 1038–1047)

      Jian Zhang, Wenfei Li, Jun Wang, Meng Qin and Wei Wang

      Version of Record online: 4 MAR 2008 | DOI: 10.1002/prot.22001

    15. Predicting helix orientation for coiled-coil dimers (pages 1048–1065)

      James R. Apgar, Karl N. Gutwin and Amy E. Keating

      Version of Record online: 27 MAY 2008 | DOI: 10.1002/prot.22118

  2. Structure Notes

    1. Top of page
    2. Research Articles
    3. Structure Notes
    1. You have free access to this content
      Crystal structure of a PduO-type ATP:cobalamin adenosyltransferase from Burkholderia thailandensis (pages 1066–1070)

      Jin Ho Moon, Ae Kyung Park, Eun Hyuk Jang, Heenam Stanley Kim and Young Min Chi

      Version of Record online: 12 MAY 2008 | DOI: 10.1002/prot.22084

    2. You have free access to this content
    3. You have free access to this content
      Glutathionylation-triggered conformational changes of glutaredoxin Grx1 from the yeast Saccharomyces cerevisiae (pages 1077–1083)

      Jiang Yu, Nan-Nan Zhang, Pei-Dong Yin, Pei-Xin Cui and Cong-Zhao Zhou

      Version of Record online: 12 MAY 2008 | DOI: 10.1002/prot.22096

    4. You have free access to this content
      Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae (pages 1096–1103)

      Sugadev Ragumani, Desigan Kumaran, Stephen K. Burley and Subramanyam Swaminathan

      Version of Record online: 22 MAY 2008 | DOI: 10.1002/prot.22095

    5. The NMR solution structure of the artificial protein M7 matches the computationally designed model (pages 1104–1107)

      Claudius Stordeur, Roman Dallüge, Olaf Birkenmeier, Hans Wienk, Rainer Rudolph, Christian Lange and Christian Lücke

      Version of Record online: 22 MAY 2008 | DOI: 10.1002/prot.22107

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