Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

September 2008

Volume 72, Issue 4

Pages 1109–1377

  1. Short Communication

    1. Top of page
    2. Short Communication
    3. Research Articles
    4. Structure Notes
    5. Erratum
  2. Research Articles

    1. Top of page
    2. Short Communication
    3. Research Articles
    4. Structure Notes
    5. Erratum
    1. Enzymatic characterization and crystal structure analysis of the D-alanine-D-alanine ligase from Helicobacter pylori (pages 1148–1160)

      Dalei Wu, Liang Zhang, Yunhua Kong, Jiamu Du, Shuai Chen, Jing Chen, Jianping Ding, Hualiang Jiang and Xu Shen

      Version of Record online: 4 MAR 2008 | DOI: 10.1002/prot.22009

    2. Refining homology models by combining replica-exchange molecular dynamics and statistical potentials (pages 1171–1188)

      Jiang Zhu, Hao Fan, Xavier Periole, Barry Honig and Alan E. Mark

      Version of Record online: 12 MAR 2008 | DOI: 10.1002/prot.22005

    3. Effects of ligand binding on the dynamics of rice nonspecific lipid transfer protein 1: A model from molecular simulations (pages 1189–1198)

      Yen-Ting Lai, Chao-Sheng Cheng, Yu-Nan Liu, Yaw-Jen Liu and Ping-Chiang Lyu

      Version of Record online: 12 MAR 2008 | DOI: 10.1002/prot.22007

    4. Evidence for communality in the primary determinants of CYP74 catalysis and of structural similarities between CYP74 and classical mammalian P450 enzymes (pages 1199–1211)

      Richard K. Hughes, Faridoon K. Yousafzai, Ruth Ashton, Ivan R. Chechetkin, Shirley A. Fairhurst, Mats Hamberg and Rod Casey

      Version of Record online: 12 MAR 2008 | DOI: 10.1002/prot.22012

    5. Structural and enzymatic characterization of HP0496, a YbgC thioesterase from Helicobacter pylori (pages 1212–1221)

      Alessandro Angelini, Laura Cendron, Susana Goncalves, Giuseppe Zanotti and Laurent Terradot

      Version of Record online: 12 MAR 2008 | DOI: 10.1002/prot.22014

    6. Dark proteins: Effect of inclusion body formation on quantification of protein expression (pages 1233–1242)

      Marco A. J. Iafolla, Mostafizur Mazumder, Vandit Sardana, Tharsan Velauthapillai, Karanbir Pannu and David R. McMillen

      Version of Record online: 18 MAR 2008 | DOI: 10.1002/prot.22024

    7. Comparison of composer and ORCHESTRAR (pages 1243–1258)

      Michael A. Dolan, Matthias Keil and David S. Baker

      Version of Record online: 24 MAR 2008 | DOI: 10.1002/prot.22022

    8. Fast protein tertiary structure retrieval based on global surface shape similarity (pages 1259–1273)

      Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov and Daisuke Kihara

      Version of Record online: 24 MAR 2008 | DOI: 10.1002/prot.22030

    9. Crystal structure of archaeal tRNA(m1G37)methyltransferase aTrm5 (pages 1274–1289)

      Sakurako Goto-Ito, Takuhiro Ito, Ryohei Ishii, Yutaka Muto, Yoshitaka Bessho and Shigeyuki Yokoyama

      Version of Record online: 2 APR 2008 | DOI: 10.1002/prot.22019

    10. Insights from the energetics of water binding at the domain-ligand interface of the Src SH2 domain (pages 1290–1297)

      Gianni De Fabritiis, Sebastien Geroult, Peter V. Coveney and Gabriel Waksman

      Version of Record online: 2 APR 2008 | DOI: 10.1002/prot.22027

    11. Structure-based mutagenesis of Penicillium griseofulvum xylanase using computational design (pages 1298–1307)

      Gwénaëlle André-Leroux, Jean-Guy Berrin, Jacques Georis, Filip Arnaut and Nathalie Juge

      Version of Record online: 2 APR 2008 | DOI: 10.1002/prot.22029

    12. X-ray structures of Sap1 and Sap5: Structural comparison of the secreted aspartic proteinases from Candida albicans (pages 1308–1319)

      Claudia Borelli, Elisabeth Ruge, Jung Hoon Lee, Martin Schaller, Alexandra Vogelsang, Michel Monod, Hans Christian Korting, Robert Huber and Klaus Maskos

      Version of Record online: 2 APR 2008 | DOI: 10.1002/prot.22021

    13. Region-specific role of water in collagen unwinding and assembly (pages 1320–1332)

      Krishnakumar M. Ravikumar and Wonmuk Hwang

      Version of Record online: 2 APR 2008 | DOI: 10.1002/prot.22026

    14. Structural studies of prephenate dehydratase from Mycobacterium tuberculosis H37Rv by SAXS, ultracentrifugation, and computational analysis (pages 1352–1362)

      Ana Luiza Vivan, Rafael Andrade Caceres, Jose Ramon Beltran Abrego, Júlio César Borges, João Ruggiero Neto, Carlos H.I Ramos, Walter Filgueira de Azevedo Jr., Luiz Augusto Basso and Diógenes Santiago Santos

      Version of Record online: 2 APR 2008 | DOI: 10.1002/prot.22034

  3. Structure Notes

    1. Top of page
    2. Short Communication
    3. Research Articles
    4. Structure Notes
    5. Erratum
    1. You have free access to this content
    2. You have free access to this content
      The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide (pages 1371–1376)

      Karen S. Champagne, Nehmé Saksouk, Pedro V. Peña, Kyle Johnson, Mukta Ullah, Xiang-Jiao Yang, Jacques Côté and Tatiana G. Kutateladze

      Version of Record online: 11 JUL 2008 | DOI: 10.1002/prot.22140

  4. Erratum

    1. Top of page
    2. Short Communication
    3. Research Articles
    4. Structure Notes
    5. Erratum
    1. You have free access to this content
      Local interactions in protein folding determined through an inverse folding model (page 1377)

      Ugo Bastolla, Markus Porto and Angel R. Ortíz

      Version of Record online: 10 JUL 2008 | DOI: 10.1002/prot.22152

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