Proteins: Structure, Function, and Bioinformatics

Cover image for Proteins: Structure, Function, and Bioinformatics

April 2009

Volume 75, Issue 1

Pages 1–272

  1. Research Articles

    1. Top of page
    2. Research Articles
    3. Structure Notes
    4. Erratum
    1. Crystal structure of the hexamer of human heat shock factor binding protein 1 (pages 1–11)

      Xueqi Liu, Lingfeng Xu, Yiwei Liu, Xiaohang Tong, Guangyu Zhu, Xuejun C. Zhang, Xuemei Li and Zihe Rao

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22216

    2. Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex (pages 12–27)

      Steven Halouska, Yuzhen Zhou, Donald F. Becker and Robert Powers

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22217

    3. Molecular dynamics study of chemically engineered green fluorescent protein mutants: Comparison of intramolecular fluorescence resonance energy transfer rate (pages 28–39)

      Felicity L. Mitchell, Filipp Frank, Gabriel E. Marks, Miho Suzuki, Kenneth T. Douglas and Richard A. Bryce

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22218

    4. Residue-wise conformational stability of DLC8 dimer from native-state hydrogen exchange (pages 40–52)

      P. M. Krishna Mohan, Swagata Chakraborty and Ramakrishna V. Hosur

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22219

    5. Theoretical modeling of the O-intermediate structure of bacteriorhodopsin (pages 53–61)

      Hiroshi C. Watanabe, Takakazu Ishikura and Takahisa Yamato

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22221

    6. Using genetic algorithms to select most predictive protein features (pages 75–88)

      Andrew Kernytsky and Burkhard Rost

      Version of Record online: 17 SEP 2008 | DOI: 10.1002/prot.22211

    7. Structural basis for sugar recognition, including the Tn carcinoma antigen, by the lectin SNA-II from Sambucus nigra (pages 89–103)

      Laurent Maveyraud, Hideaki Niwa, Valérie Guillet, Dmitri I. Svergun, Peter V. Konarev, Rex A. Palmer, Willy J. Peumans, Pierre Rougé, Els J. M. Van Damme, Colin D. Reynolds and Lionel Mourey

      Version of Record online: 17 SEP 2008 | DOI: 10.1002/prot.22222

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    9. Molecular basis for dimer formation of TRβ variant D355R (pages 111–117)

      Natalia Jouravel, Elena Sablin, Marie Togashi, John D. Baxter, Paul Webb and Robert J. Fletterick

      Version of Record online: 17 SEP 2008 | DOI: 10.1002/prot.22225

    10. Structural characterization of the α-hemolysin monomer from Staphylococcus aureus (pages 118–126)

      Christian Meesters, Antje Brack, Nadja Hellmann and Heinz Decker

      Version of Record online: 17 SEP 2008 | DOI: 10.1002/prot.22227

    11. Substrate induced structural and dynamics changes in human phosphomevalonate kinase and implications for mechanism (pages 127–138)

      Andrew L. Olson, Huili Yao, Timothy J. Herdendorf, Henry M. Miziorko, Supa Hannongbua, Patchareenart Saparpakorn, Sheng Cai and Daniel S. Sem

      Version of Record online: 17 SEP 2008 | DOI: 10.1002/prot.22228

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      Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study (pages 147–167)

      Theresa A. Ramelot, Srivatsan Raman, Alexandre P. Kuzin, Rong Xiao, Li-Chung Ma, Thomas B. Acton, John F. Hunt, Gaetano T. Montelione, David Baker and Michael A. Kennedy

      Version of Record online: 24 SEP 2008 | DOI: 10.1002/prot.22229

    13. Evaluation of an inverse molecular design algorithm in a model binding site (pages 168–186)

      David J. Huggins, Michael D. Altman and Bruce Tidor

      Version of Record online: 1 OCT 2008 | DOI: 10.1002/prot.22226

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    15. Structural analysis of fish versus mammalian hemoglobins: Effect of the heme pocket environment on autooxidation and hemin loss (pages 217–230)

      Roman Aranda IV, He Cai, Chad E. Worley, Elena J. Levin, Rong Li, John S. Olson, George N. Phillips Jr and Mark P. Richards

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22236

    16. Coevolution in defining the functional specificity (pages 231–240)

      Saikat Chakrabarti and Anna R. Panchenko

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22239

  2. Structure Notes

    1. Top of page
    2. Research Articles
    3. Structure Notes
    4. Erratum
    1. You have free access to this content
      Rhesus macaque: A tight homodimeric CD8αα (pages 241–244)

      Lili Zong, Yong Chen, Hao Peng, Feng Gao, Aikichi Iwamoto and George F. Gao

      Version of Record online: 19 NOV 2008 | DOI: 10.1002/prot.22331

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      Crystal structure of human osteoclast stimulating factor (pages 245–251)

      Shuilong Tong, Huihao Zhou, Yongxiang Gao, Zhiqiang Zhu, Xiao Zhang, Maikun Teng and Liwen Niu

      Version of Record online: 19 NOV 2008 | DOI: 10.1002/prot.22333

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      Solution structure of hypothetical protein HP1423 (Y1423_HELPY) reveals the presence of αL motif related to RNA binding (pages 252–257)

      Ji-Hun Kim, Sung Jean Park, Ki-Young Lee, Woo-Sung Son, Na-Young Sohn, Ae-Ran Kwon and Bong-Jin Lee

      Version of Record online: 24 NOV 2008 | DOI: 10.1002/prot.22335

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      Crystal structure of the dimerization domain of human filamin A (pages 258–263)

      Min-Duk Seo, Seung-Hyeon Seok, Hookang Im, Ae-Ran Kwon, Sang Jae Lee, Hyung-Ryong Kim, Yongcheol Cho, Dongeun Park and Bong-Jin Lee

      Version of Record online: 24 NOV 2008 | DOI: 10.1002/prot.22336

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      Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 Å resolution (pages 264–271)

      Debanu Das, S. Sri Krishna, Daniel McMullan, Mitchell D. Miller, Qingping Xu, Polat Abdubek, Claire Acosta, Tamara Astakhova, Herbert L. Axelrod, Prasad Burra, Dennis Carlton, Hsiu-Ju Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Ylva Elias, Marc-André Elsliger, Dustin Ernst, Julie Feuerhelm, Anna Grzechnik, Slawomir K. Grzechnik, Joanna Hale, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Piotr Kozbial, Abhinav Kumar, David Marciano, Andrew T. Morse, Kevin D. Murphy, Edward Nigoghossian, Linda Okach, Silvya Oommachen, Jessica Paulsen, Ron Reyes, Christopher L. Rife, Natasha Sefcovic, Henry Tien, Christine B. Trame, Christina V. Trout, Henry van den Bedem, Dana Weekes, Aprilfawn White, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Version of Record online: 8 DEC 2008 | DOI: 10.1002/prot.22338

  3. Erratum

    1. Top of page
    2. Research Articles
    3. Structure Notes
    4. Erratum
    1. You have free access to this content
      A potential molecular switch in an α-helical coiled coil (page 272)

      Charles A. Laughton, Ben F. Luisi, J. Venkatesh Pratap and Chris R. Calladine

      Version of Record online: 11 DEC 2008 | DOI: 10.1002/prot.22351

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