Proteins: Structure, Function, and Bioinformatics

Cover image for Vol. 75 Issue 2

1 May 2009

Volume 75, Issue 2

Pages 275–532

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Chaperone action of a versatile small heat shock protein from Methanococcoides burtonii, a cold adapted archaeon (pages 275–281)

      Pongpan Laksanalamai, Suchithra Narayan, Haibin Luo and Frank T. Robb

      Version of Record online: 10 SEP 2008 | DOI: 10.1002/prot.22261

    2. XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch (pages 282–288)

      Tso-Ning Li, Ko-Hsin Chin, Jyung-Hurng Liu, Andrew H.-J. Wang and Shan-Ho Chou

      Version of Record online: 18 NOV 2008 | DOI: 10.1002/prot.22330

    3. An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases (pages 289–295)

      Brian Weitzner, Thomas Meehan, Qifang Xu and Roland L. Dunbrack Jr.

      Version of Record online: 11 DEC 2008 | DOI: 10.1002/prot.22347

    4. Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 Å resolution (pages 296–307)

      Debanu Das, Piotr Kozbial, Herbert L. Axelrod, Mitchell D. Miller, Daniel McMullan, S. Sri Krishna, Polat Abdubek, Claire Acosta, Tamara Astakhova, Prasad Burra, Dennis Carlton, Connie Chen, Hsiu-Ju Chiu, Thomas Clayton, Marc C. Deller, Lian Duan, Ylva Elias, Marc-André Elsliger, Dustin Ernst, Carol Farr, Julie Feuerhelm, Anna Grzechnik, Slawomir K. Grzechnik, Joanna Hale, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Hope A. Johnson, Heath E. Klock, Mark W. Knuth, Abhinav Kumar, David Marciano, Andrew T. Morse, Kevin D. Murphy, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Silvya Oommachen, Jessica Paulsen, Christina Puckett, Ron Reyes, Christopher L. Rife, Natasha Sefcovic, Sebastian Sudek, Henry Tien, Christine Trame, Christina V. Trout, Henry van den Bedem, Dana Weekes, Aprilfawn White, Qingping Xu, Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson

      Version of Record online: 23 DEC 2008 | DOI: 10.1002/prot.22360

  2. Research Articles

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa (pages 336–347)

      Rintaro Suzuki, Heisaburo Shindo, Akira Tase, Yoshiko Kikuchi, Mitsuhiro Shimizu and Toshimasa Yamazaki

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22243

    2. Mechanism for multiple-substrates recognition of α-aminoadipate aminotransferase from Thermus thermophilus (pages 348–359)

      Takeo Tomita, Tomoharu Miyagawa, Takashi Miyazaki, Shinya Fushinobu, Tomohisa Kuzuyama and Makoto Nishiyama

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22245

    3. AU-rich RNA-binding induces changes in the quaternary structure of AUH (pages 360–372)

      Kazuki Kurimoto, Kanako Kuwasako, Alan M. Sandercock, Satoru Unzai, Carol V. Robinson, Yutaka Muto and Shigeyuki Yokoyama

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22246

    4. Ferric uptake regulator protein: Binding free energy calculations and per-residue free energy decomposition (pages 373–386)

      Rafi Ahmad, Bjørn Olav Brandsdal, Isabelle Michaud-Soret and Nils-Peder Willassen

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22247

    5. Consensus scoring for enriching near-native structures from protein–protein docking decoys (pages 397–403)

      Shide Liang, Samy O. Meroueh, Guangce Wang, Chao Qiu and Yaoqi Zhou

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22252

    6. Nonrandom distribution of intramolecular contacts in native single-domain proteins (pages 404–412)

      Bryan C. Mounce, Neşe Kurt, Paul A. Ellison and Silvia Cavagnero

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22258

    7. You have free access to this content
      An all-atom structure-based potential for proteins: Bridging minimal models with all-atom empirical forcefields (pages 430–441)

      Paul C. Whitford, Jeffrey K. Noel, Shachi Gosavi, Alexander Schug, Kevin Y. Sanbonmatsu and José N. Onuchic

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22253

    8. Shape complementarity of protein–protein complexes at multiple resolutions (pages 453–467)

      Qing Zhang, Michel Sanner and Arthur J. Olson

      Version of Record online: 2 SEP 2008 | DOI: 10.1002/prot.22256

    9. Binding and release of cholesterol in the Osh4 protein of yeast (pages 468–477)

      Rishi P. Singh, Bernard R. Brooks and Jeffery B. Klauda

      Version of Record online: 10 SEP 2008 | DOI: 10.1002/prot.22263

    10. In silico analyses of substrate interactions with human serum paraoxonase 1 (pages 486–498)

      Xin Hu, Xiaohui Jiang, David E. Lenz, Douglas M. Cerasoli and Anders Wallqvist

      Version of Record online: 10 SEP 2008 | DOI: 10.1002/prot.22264

    11. PIK3CA somatic mutations in breast cancer: Mechanistic insights from Langevin dynamics simulations (pages 499–508)

      Parminder K. Mankoo, Saraswati Sukumar and Rachel Karchin

      Version of Record online: 10 SEP 2008 | DOI: 10.1002/prot.22265

    12. The osmolyte betaine promotes protein misfolding and disruption of protein aggregates (pages 509–517)

      Antonino Natalello, Jing Liu, Diletta Ami, Silvia Maria Doglia and Ario de Marco

      Version of Record online: 10 SEP 2008 | DOI: 10.1002/prot.22266

  3. Structure Notes

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. You have free access to this content
      Solution structure of the C-terminal domain of multiprotein bridging factor 1 (MBF1) of Trichoderma reesei (pages 518–523)

      Roberto K. Salinas, Cesar M. Camilo, Simona Tomaselli, Estela Y. Valencia, Chuck S. Farah, Hamza El-Dorry and Felipe S. Chambergo

      Version of Record online: 8 DEC 2008 | DOI: 10.1002/prot.22344

    2. You have free access to this content
      Crystal structure of LZ-8 from the medicinal fungus Ganoderma lucidium (pages 524–527)

      Liang Huang, Fei Sun, Chongyang Liang, Yong-Xing He, Rui Bao, Lixia Liu and Cong-Zhao Zhou

      Version of Record online: 11 DEC 2008 | DOI: 10.1002/prot.22346

    3. You have free access to this content
      X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8 (pages 528–532)

      Keiko Sakamoto, Yoshihiro Agari, Kazuko Agari, Shigeyuki Yokoyama, Seiki Kuramitsu and Akeo Shinkai

      Version of Record online: 23 DEC 2008 | DOI: 10.1002/prot.22358

      Corrected by:

      Erratum: X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8

      Vol. 78, Issue 6, 1611, Version of Record online: 21 DEC 2009

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