Proteins: Structure, Function, and Bioinformatics

Cover image for Vol. 76 Issue 1

July 2009

Volume 76, Issue 1

Pages 1–269

  1. Research Articles

    1. Top of page
    2. Research Articles
    3. Structure Notes
    1. You have free access to this content
      Defining and characterizing protein surface using alpha shapes (pages 1–12)

      Laurent-Philippe Albou, Benjamin Schwarz, Olivier Poch, Jean Marie Wurtz and Dino Moras

      Version of Record online: 21 OCT 2008 | DOI: 10.1002/prot.22301

    2. A unified hydrophobicity scale for multispan membrane proteins (pages 13–29)

      Julia Koehler, Nils Woetzel, René Staritzbichler, Charles R. Sanders and Jens Meiler

      Version of Record online: 4 NOV 2008 | DOI: 10.1002/prot.22315

    3. Domain motions of hyaluronan lyase underlying processive hyaluronan translocation (pages 30–46)

      Harshad V. Joshi, Mark J. Jedrzejas and Bert L. de Groot

      Version of Record online: 4 NOV 2008 | DOI: 10.1002/prot.22316

    4. Combined QM/MM mechanistic study of the acylation process in furin complexed with the H5N1 avian influenza virus hemagglutinin's cleavage site (pages 62–71)

      Thanyada Rungrotmongkol, Panita Decha, Pornthep Sompornpisut, Maturos Malaisree, Pathumwadee Intharathep, Nadtanet Nunthaboot, Thanyarat Udommaneethanakit, Ornjira Aruksakunwong and Supot Hannongbua

      Version of Record online: 6 NOV 2008 | DOI: 10.1002/prot.22318

    5. Conserved amino acid networks involved in antibody variable domain interactions (pages 99–114)

      Norman Wang, William F. Smith, Brian R. Miller, Dikran Aivazian, Alexey A. Lugovskoy, Mitchell E. Reff, Scott M. Glaser, Lisa J. Croner and Stephen J. Demarest

      Version of Record online: 11 NOV 2008 | DOI: 10.1002/prot.22319

    6. Enhanced protein fold recognition using a structural alphabet (pages 129–137)

      Patrick Deschavanne and Pierre Tufféry

      Version of Record online: 11 NOV 2008 | DOI: 10.1002/prot.22324

    7. Inclusion of ionization states of ligands in affinity calculations (pages 138–150)

      Serena Donnini, Alessandra Villa, Gerrit Groenhof, Alan E. Mark, Rik K. Wierenga and André H. Juffer

      Version of Record online: 18 NOV 2008 | DOI: 10.1002/prot.22326

    8. Geometric characteristics of hydrogen bonds involving sulfur atoms in proteins (pages 151–163)

      Peng Zhou, Feifei Tian, Fenglin Lv and Zhicai Shang

      Version of Record online: 18 NOV 2008 | DOI: 10.1002/prot.22327

    9. A method for the analysis of domain movements in large biomolecular complexes (pages 201–212)

      Guru Prasad Poornam, Atsushi Matsumoto, Hisashi Ishida and Steven Hayward

      Version of Record online: 8 DEC 2008 | DOI: 10.1002/prot.22339

    10. Tuning the conformational properties of the prion peptide (pages 213–225)

      Chai-Chi Ho, Lily Y.-L. Lee, Kuo-Ting Huang, Chun-Cheng Lin, Mei-yun Ku, Chien-Chih Yang, Sunney I. Chan, Ruei-Lin Hsu and Rita P.-Y. Chen

      Version of Record online: 8 DEC 2008 | DOI: 10.1002/prot.22341

    11. Non-native α-helix formation is not necessary for folding of lipocalin: Comparison of burst-phase folding between tear lipocalin and β-lactoglobulin (pages 226–236)

      Seiichi Tsukamoto, Takako Yamashita, Yoshiteru Yamada, Kazuo Fujiwara, Kosuke Maki, Kunihiro Kuwajima, Yoshitaka Matsumura, Hiroshi Kihara, Hideaki Tsuge and Masamichi Ikeguchi

      Version of Record online: 8 DEC 2008 | DOI: 10.1002/prot.22340

  2. Structure Notes

    1. Top of page
    2. Research Articles
    3. Structure Notes
    1. You have free access to this content
      Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds (pages 237–243)

      Betsy L. Lytle, Jikui Song, Norberto B. de la Cruz, Francis C. Peterson, Kenneth A. Johnson, Craig A. Bingman, George N. Phillips Jr. and Brian F. Volkman

      Version of Record online: 2 FEB 2009 | DOI: 10.1002/prot.22396

    2. You have free access to this content
      Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8 (pages 244–248)

      Fumiaki Tomoike, Taisuke Wakamatsu, Noriko Nakagawa, Seiki Kuramitsu and Ryoji Masui

      Version of Record online: 2 FEB 2009 | DOI: 10.1002/prot.22397

    3. Crystal structure of Saccharomyces cerevisiae glutamine synthetase Gln1 suggests a nanotube-like supramolecular assembly (pages 249–254)

      Yong-Xing He, Long Gui, Yin-Zi Liu, Yang Du, Yeyun Zhou, Ping Li and Cong-Zhao Zhou

      Version of Record online: 10 FEB 2009 | DOI: 10.1002/prot.22403

    4. You have free access to this content
    5. You have free access to this content
      Solution structure of Apo-YjaB from Escherichia coli (pages 261–265)

      Jie Lu, Xu Wang, Bin Xia and Changwen Jin

      Version of Record online: 24 FEB 2009 | DOI: 10.1002/prot.22407

    6. You have free access to this content
      Solution structure of SUMO from Trypanosoma brucei and its interaction with Ubc9 (pages 266–269)

      Qiang Shang, Chao Xu, Jiahai Zhang, Xuecheng Zhang and Xiaoming Tu

      Version of Record online: 24 FEB 2009 | DOI: 10.1002/prot.22409

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