Proteins: Structure, Function, and Bioinformatics

Cover image for Vol. 80 Issue 3

March 2012

Volume 80, Issue 3

Pages 677–974

  1. Short Communications

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Kinetics and thermodynamics of gas diffusion in a NiFe hydrogenase (pages 677–682)

      Jérémie Topin, Marc Rousset, Serge Antonczak and Jérôme Golebiowski

      Article first published online: 21 DEC 2011 | DOI: 10.1002/prot.23248

  2. Research Articles

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Ligand-induced formation of transient dimers of mammalian 12/15-lipoxygenase: A key to allosteric behavior of this class of enzymes? (pages 703–712)

      Igor Ivanov, Weifeng Shang, Lea Toledo, Laura Masgrau, Dmitri I. Svergun, Sabine Stehling, Hansel Gómez, Almerinda Di Venere, Giampiero Mei, José M. Lluch, Ewa Skrzypczak-Jankun, Àngels González-Lafont and Hartmut Kühn

      Article first published online: 21 DEC 2011 | DOI: 10.1002/prot.23227

    2. On the stoichiometry of Deinococcus radiodurans Dps-1 binding to duplex DNA (pages 713–721)

      Khoa H. Nguyen, Luke T. Smith, LiJuan Xiao, Gargi Bhattacharyya and Anne Grove

      Article first published online: 24 NOV 2011 | DOI: 10.1002/prot.23228

    3. Novel high-affinity binders of human interferon gamma derived from albumin-binding domain of protein G (pages 774–789)

      Jawid N. Ahmad, Jingjing Li, Lada Biedermannová, Milan Kuchař, Hana Šípová, Alena Semerádtová, Jiří Černý, Hana Petroková, Pavel Mikulecký, Jiří Polínek, Ondřej Staněk, Jiří Vondrášek, Jiří Homola, Jan Malý, Radim Osička, Peter Šebo and Petr Malý

      Article first published online: 24 NOV 2011 | DOI: 10.1002/prot.23234

    4. H-bond network optimization in protein–protein complexes: Are all-atom force field scores enough? (pages 818–824)

      Diego Masone, Israel Cabeza de Vaca, Carles Pons, Juan Fernandez Recio and Victor Guallar

      Article first published online: 24 NOV 2011 | DOI: 10.1002/prot.23239

    5. Camps 2.0: Exploring the sequence and structure space of prokaryotic, eukaryotic, and viral membrane proteins (pages 839–857)

      Sindy Neumann, Holger Hartmann, Antonio J. Martin-Galiano, Angelika Fuchs and Dmitrij Frishman

      Article first published online: 28 DEC 2011 | DOI: 10.1002/prot.23242

    6. Kinetic consequences of native state optimization of surface-exposed electrostatic interactions in the Fyn SH3 domain (pages 858–870)

      Arash Zarrine-Afsar, Zhuqing Zhang, Katrina L. Schweiker, George I. Makhatadze, Alan R. Davidson and Hue Sun Chan

      Article first published online: 13 DEC 2011 | DOI: 10.1002/prot.23243

    7. Thermodynamic analysis of water molecules at the surface of proteins and applications to binding site prediction and characterization (pages 871–883)

      Thijs Beuming, Ye Che, Robert Abel, Byungchan Kim, Veerabahu Shanmugasundaram and Woody Sherman

      Article first published online: 16 DEC 2011 | DOI: 10.1002/prot.23244

    8. You have full text access to this OnlineOpen article
    9. A universal combinatorial design of antibody framework to graft distinct CDR sequences: A bioinformatics approach (pages 896–912)

      Jaafar N. Haidar, Qing-An Yuan, Lin Zeng, Mark Snavely, Xenia Luna, Haifan Zhang, Wei Zhu, Dale L. Ludwig and Zhenping Zhu

      Article first published online: 16 DEC 2011 | DOI: 10.1002/prot.23246

      Corrected by:

      Errata: A universal combinatorial design of antibody framework to graft distinct CDR sequences: A bioinformatics approach

      Vol. 81, Issue 9, 1677, Article first published online: 23 AUG 2013

    10. Geofold: Topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability (pages 920–934)

      Vibin Ramakrishnan, Sai Praveen Srinivasan, Saeed M. Salem, Suzanne J. Matthews, Wilfredo Colón, Mohammed Zaki and Christopher Bystroff

      Article first published online: 21 DEC 2011 | DOI: 10.1002/prot.23249

    11. Identification of the bile salt binding site on ipad from Shigella flexneri and the influence of ligand binding on IpaD structure (pages 935–945)

      Michael L. Barta, Manita Guragain, Philip Adam, Nicholas E. Dickenson, Mrinalini Patil, Brian V. Geisbrecht, Wendy L. Picking and William D. Picking

      Article first published online: 23 DEC 2011 | DOI: 10.1002/prot.23251

    12. The N-terminal domains of SOCS proteins: A conserved region in the disordered N-termini of SOCS4 and 5 (pages 946–957)

      Zhi-Ping Feng, Indu R. Chandrashekaran, Andrew Low, Terence P. Speed, Sandra E. Nicholson and Raymond S. Norton

      Article first published online: 23 DEC 2011 | DOI: 10.1002/prot.23252

  3. Structure Notes

    1. Top of page
    2. Short Communications
    3. Research Articles
    4. Structure Notes
    1. Structural analysis of Escherichia coli C5 protein (pages 963–967)

      Jae-Sun Shin, Kwang-Sun Kim, Kyoung-Seok Ryu, Kook Han, Younghoon Lee and Byong-Seok Choi

      Article first published online: 23 DEC 2011 | DOI: 10.1002/prot.23253

    2. Solution structure of the splicing factor motif of the human Prp18 protein (pages 968–974)

      Fahu He, Makoto Inoue, Takanori Kigawa, Mari Takahashi, Kanako Kuwasako, Kengo Tsuda, Naohiro Kobayashi, Takaho Terada, Mikako Shirouzu, Peter Güntert, Shigeyuki Yokoyama and Yutaka Muto

      Article first published online: 28 DEC 2011 | DOI: 10.1002/prot.24003

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