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Proteins: Structure, Function, and Bioinformatics

Cover image for Vol. 82 Issue S2

Special Issue: Tenth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction

February 2014

Volume 82, Issue Supplement S2

Pages 1–230

  1. Articles

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    2. Articles
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      Critical assessment of methods of protein structure prediction (CASP) — round x (pages 1–6)

      John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Torsten Schwede and Anna Tramontano

      Version of Record online: 17 DEC 2013 | DOI: 10.1002/prot.24452

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      CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL (pages 7–13)

      Andriy Kryshtafovych, Bohdan Monastyrskyy and Krzysztof Fidelis

      Version of Record online: 17 OCT 2013 | DOI: 10.1002/prot.24399

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      Definition and classification of evaluation units for CASP10 (pages 14–25)

      Todd J. Taylor, Chin-Hsien Tai, Yuanpeng J. Huang, Jeremy Block, Hongjun Bai, Andriy Kryshtafovych, Gaetano T. Montelione and Byungkook Lee

      Version of Record online: 22 NOV 2013 | DOI: 10.1002/prot.24434

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      Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10 (pages 26–42)

      Andriy Kryshtafovych, John Moult, Patrick Bales, J. Fernando Bazan, Marco Biasini, Alex Burgin, Chen Chen, Frank V. Cochran, Timothy K. Craig, Rhiju Das, Deborah Fass, Carmela Garcia-Doval, Osnat Herzberg, Donald Lorimer, Hartmut Luecke, Xiaolei Ma, Daniel C. Nelson, Mark J. van Raaij, Forest Rohwer, Anca Segall, Victor Seguritan, Kornelius Zeth and Torsten Schwede

      Version of Record online: 25 JAN 2014 | DOI: 10.1002/prot.24489

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      Assessment of template-based protein structure predictions in CASP10 (pages 43–56)

      Yuanpeng J. Huang, Binchen Mao, James M. Aramini and Gaetano T. Montelione

      Version of Record online: 25 JAN 2014 | DOI: 10.1002/prot.24488

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      Assessment of template-free modeling in CASP10 and ROLL (pages 57–83)

      Chin-Hsien Tai, Hongjun Bai, Todd J. Taylor and Byungkook Lee

      Version of Record online: 17 DEC 2013 | DOI: 10.1002/prot.24470

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      Assessment of CASP10 contact-assisted predictions (pages 84–97)

      Todd J. Taylor, Hongjun Bai, Chin-Hsien Tai and Byungkook Lee

      Version of Record online: 16 OCT 2013 | DOI: 10.1002/prot.24367

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      Evaluation of predictions in the CASP10 model refinement category (pages 98–111)

      Timothy Nugent, Domenico Cozzetto and David T. Jones

      Version of Record online: 3 JAN 2014 | DOI: 10.1002/prot.24377

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      Assessment of the assessment: Evaluation of the model quality estimates in CASP10 (pages 112–126)

      Andriy Kryshtafovych, Alessandro Barbato, Krzysztof Fidelis, Bohdan Monastyrskyy, Torsten Schwede and Anna Tramontano

      Version of Record online: 31 AUG 2013 | DOI: 10.1002/prot.24347

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      Assessment of protein disorder region predictions in CASP10 (pages 127–137)

      Bohdan Monastyrskyy, Andriy Kryshtafovych, John Moult, Anna Tramontano and Krzysztof Fidelis

      Version of Record online: 22 NOV 2013 | DOI: 10.1002/prot.24391

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      Evaluation of residue–residue contact prediction in CASP10 (pages 138–153)

      Bohdan Monastyrskyy, Daniel D'Andrea, Krzysztof Fidelis, Anna Tramontano and Andriy Kryshtafovych

      Version of Record online: 31 AUG 2013 | DOI: 10.1002/prot.24340

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      Assessment of ligand binding site predictions in CASP10 (pages 154–163)

      Tiziano Gallo Cassarino, Lorenza Bordoli and Torsten Schwede

      Version of Record online: 25 JAN 2014 | DOI: 10.1002/prot.24495

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      CASP10 results compared to those of previous CASP experiments (pages 164–174)

      Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

      Version of Record online: 17 DEC 2013 | DOI: 10.1002/prot.24448

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      Protein structure modeling for CASP10 by multiple layers of global optimization (pages 188–195)

      Keehyoung Joo, Juyong Lee, Sangjin Sim, Sun Young Lee, Kiho Lee, Seungryong Heo, In-Ho Lee, Sung Jong Lee and Jooyoung Lee

      Version of Record online: 24 OCT 2013 | DOI: 10.1002/prot.24397

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      One contact for every twelve residues allows robust and accurate topology-level protein structure modeling (pages 208–218)

      David E. Kim, Frank DiMaio, Ray Yu-Ruei Wang, Yifan Song and David Baker

      Version of Record online: 10 SEP 2013 | DOI: 10.1002/prot.24374

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      The expanded FindCore method for identification of a core atom set for assessment of protein structure prediction (pages 219–230)

      David A. Snyder, Jennifer Grullon, Yuanpeng J. Huang, Roberto Tejero and Gaetano T. Montelione

      Version of Record online: 25 JAN 2014 | DOI: 10.1002/prot.24490

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