• 1
    Andrews PW, Banting G, Damjanov I et al. Three monoclonal antibodies defining distinct differentiation antigens associated with different high molecular weight polypeptides on the surface of human embryonal carcinoma cells. Hybridoma 1984; 3: 347361.
  • 2
    Cooper S, Bennett W, Andrade J et al. Biochemical properties of a keratan sulphate/chondroitin sulphate proteoglycan expressed in primate pluripotent stem cells. J Anat 2002; 200: 259265.
  • 3
    Costa M, Dottori M, Ng E et al. The hESC line Envy expresses high levels of GFP in all differentiated progeny. Nat Methods 2005; 2: 259260.
  • 4
    Kannagi R, Cochran NA, Ishigami F et al. Stage-specific embryonic antigens (SSEA-3 and -4) are epitopes of a unique globo-series ganglioside isolated from human teratocarcinoma cells. EMBO J 1983; 2: 23552361.
  • 5
    Kannagi R, Levery SB, Ishigami F et al. New globoseries glycosphingolipids in human teratocarcinoma reactive with the monoclonal antibody directed to a developmentally regulated antigen, stage-specific embryonic antigen 3. J Biol Chem 1983; 258: 89348942.
  • 6
    Kerjaschki D, Poczewski H, Dekan G et al. Identification of a major sialoprotein in the glycocalyx of human visceral glomerular epithelial cells. J Clin Invest 1986; 78: 11421149.
  • 7
    Laslett AL, Filipczyk AA, Pera MF. Characterization and culture of human embryonic stem cells. Trends Cardiovasc Med 2003; 13: 295301.
  • 8
    Pera MF, Filipczyk AA, Hawes SM et al. Isolation, characterization, and differentiation of human embryonic stem cells. Methods Enzymol 2003; 365: 429446.
  • 9
    Son YS, Park JH, Kang YK et al. Heat shock 70-kDa protein 8 isoform 1 is expressed on the surface of human embryonic stem cells and downregulated upon differentiation. Stem Cells 2005; 23: 15021513.
  • 10
    Mason MD, Pera MF. Immunohistochemical and biochemical characterisation of the expression of a human embryonal carcinoma cell proteoglycan antigen in human germ cell tumours and other tissues. Eur J Cancer 1992; 28A: 10901098.
  • 11
    Laslett AL, Grimmond S, Gardiner B et al. Transcriptional analysis of early lineage commitment in human embryonic stem cells. BMC Dev Biol 2007; 7: 12.
  • 12
    Stewart MH, Bosse M, Chadwick K et al. Clonal isolation of hESCs reveals heterogeneity within the pluripotent stem cell compartment. Nat Methods 2006; 3: 807815.
  • 13
    Cai J, Olson JM, Rao MS et al. Development of antibodies to human embryonic stem cell antigens. BMC Dev Biol 2005; 5: 26.
  • 14
    Choi HS, Kim H, Won A et al. Development of a decoy immunization strategy to identify cell-surface molecules expressed on undifferentiated human embryonic stem cells. Cell Tissue Res 2008; 333: 197206.
  • 15
    Choo AB, Tan HL, Ang SN et al. Selection against undifferentiated human embryonic stem cells by a cytotoxic antibody recognizing podocalyxin-like protein-1. Stem Cells 2008; 26: 14541463.
  • 16
    Drukker M, Muscat C, Weissman IL. Generation of a monoclonal antibody library against human embryonic stem cells. Methods Mol Biol 2007; 407: 6381.
  • 17
    Bhattacharya B, Miura T, Brandenberger R et al. Gene expression in human embryonic stem cell lines: unique molecular signature. Blood 2004; 103: 29562964.
  • 18
    Brandenberger R, Khrebtukova I, Thies RS et al. MPSS profiling of human embryonic stem cells. BMC Dev Biol 2004; 4: 10.
  • 19
    Richards M, Tan SP, Tan JH et al. The transcriptome profile of human embryonic stem cells as defined by SAGE. Stem Cells 2004; 22: 5164.
  • 20
    Sato N, Sanjuan IM, Heke M et al. Molecular signature of human embryonic stem cells and its comparison with the mouse. Dev Biol 2003; 260: 404413.
  • 21
    Sperger JM, Chen X, Draper JS et al. Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors. Proc Natl Acad Sci U S A 2003; 100: 1335013355.
  • 22
    Assou S, Le Carrour T, Tondeur S et al. A meta-analysis of human embryonic stem cells transcriptome integrated into a web-based expression atlas. Stem Cells 2007; 25: 961973.
  • 23
    Baharvand H, Hajheidari M, Ashtiani SK et al. Proteomic signature of human embryonic stem cells. Proteomics 2006; 6: 35443549.
  • 24
    Dormeyer W, van Hoof D, Braam SR et al. Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells. J Proteome Res 2008; 7: 29362951.
  • 25
    Schulz TC, Swistowska AM, Liu Y et al. A large-scale proteomic analysis of human embryonic stem cells. BMC Genomics 2007; 8: 478.
  • 26
    Van Hoof D, Passier R, Ward-Van Oostwaard D et al. A quest for human and mouse embryonic stem cell-specific proteins. Mol Cell Proteomics 2006; 5: 12611273.
  • 27
    Yocum AK, Gratsch TE, Leff N et al. Coupled global and targeted proteomics of human embryonic stem cells during induced differentiation. Mol Cell Proteomics 2008; 7: 750767.
  • 28
    Nagano K, Yoshida Y, Isobe T. Cell surface biomarkers of embryonic stem cells. Proteomics 2008; 8: 40254035.
  • 29
    Diehn M, Bhattacharya R, Botstein D et al. Genome-scale identification of membrane-associated human mRNAs. Plos Genet 2006; 2: e11.
  • 30
    Diehn M, Eisen MB, Botstein D et al. Large-scale identification of secreted and membrane-associated gene products using DNA microarrays. Nat Genet 2000; 25: 5862.
  • 31
    Stitziel NO, Mar BG, Liang J et al. Membrane-associated and secreted genes in breast cancer. Cancer Res 2004; 64: 86828687.
  • 32
    de Jong M, van Breukelen B, Wittink FR et al. Membrane-associated transcripts in Arabidopsis; their isolation and characterization by DNA microarray analysis and bioinformatics. Plant J 2006; 46: 708721.
  • 33
    Adewumi O, Aflatoonian B, Ahrlund-Richter L et al. Characterization of human embryonic stem cell lines by the International Stem Cell Initiative. Nat Biotechnol 2007; 25: 803816.
  • 34
    Amit M, Carpenter MK, Inokuma MS et al. Clonally derived human embryonic stem cell lines maintain pluripotency and proliferative potential for prolonged periods of culture. Dev Biol 2000; 227: 271278.
  • 35
    Ludwig TE, Bergendahl V, Levenstein ME et al. Feeder-independent culture of human embryonic stem cells. Nat Methods 2006; 3: 637646.
  • 36
    Xu C, Inokuma MS, Denham J et al. Feeder-free growth of undifferentiated human embryonic stem cells. Nat Biotechnol 2001; 19: 971974.
  • 37
    Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004; 3:Article3.
  • 38
    Tusnády GE, Simon I. The HMMTOP transmembrane topology prediction server. Bioinformatics 2001; 17: 849850.
  • 39
    Käll L, Krogh A, Sonnhammer EL. A combined transmembrane topology and signal peptide prediction method. J Mol Biol 2004; 338: 10271036.
  • 40
    Möller S, Croning MD, Apweiler R. Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 2001; 17: 646653.
  • 41
    Emanuelsson O, Nielsen H, Brunak S et al. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 2000; 300: 10051016.
  • 42
    Bendtsen JD, Nielsen H, von Heijne G et al. Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 2004; 340: 783795.
  • 43
    Müller FJ, Laurent LC, Kostka D et al. Regulatory networks define phenotypic classes of human stem cell lines. Nature 2008; 455: 401405.
  • 44
    Enver T, Soneji S, Joshi C et al. Cellular differentiation hierarchies in normal and culture-adapted human embryonic stem cells. Hum Mol Genet 2005; 14: 31293140.
  • 45
    Chang WY, Stanford WL. Translational control: a new dimension in embryonic stem cell network analysis. Cell Stem Cell 2008; 2: 410412.
  • 46
    Sampath P, Pritchard DK, Pabon L et al. A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation. Cell Stem Cell 2008; 2: 448460.
  • 47
    Trzpis M, McLaughlin PM, de Leij LM et al. Epithelial cell adhesion molecule: more than a carcinoma marker and adhesion molecule. Am J Pathol 2007; 171: 386395.
  • 48
    Gonzalez B, Denzel S, Mack B et al. EPCAM is involved in maintenance of the murine ES cell phenotype. Stem Cells 2009 [Epub ahead of print].