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References

  • [1]
    Snape, I, Riddle, M.J, Stark, J.S, Cole, C.M, King, C.K, Duquesne, S, Gore, D.B (2001) Management and remediation of contaminated sites at Casey Station, Antarctica. Polar Rec. 37, 119214.
  • [2]
    Wilkniss, P.E (1990) Fuel spill clean up in the Antarctic. Antarct. J. USA 25, 310.
  • [3]
    Kennicutt, M.C, McDonald, T.J, Denoux, G.J, McDonald, S.J (1992) Hydrocarbon contamination on the Antarctic peninsula: Arthur Harbour – subtidal sediments. Mar. Pollut. Bull. 24, 499506.
  • [4]
    Deprez, P.P, Arens, M, Locher, H (1999) Identification and assessment of contaminated sites at Casey. Polar Rec. 195, 299316.
  • [5]
    Kennicutt, M.C (1990) Oil spillage in Antarctica. Environ. Sci. Technol. 24, 620624.
  • [6]
    Snape, I., Cole, C.M., Gore, D.B., Riddle, M.J. and Yarnall, M. (1998) A Preliminary Assessment of Contaminants at the Abandoned Wilkes Station, East Antarctica, with Recommendations for Establishing an Environmental Management Strategy. Australian Antarctic Division, Kingston, Tasmania.
  • [7]
    Stark, J.S, Riddle, M.J, Snape, I, Scouller, R.C (2003) Human impacts in Antarctic marine soft-sediment assemblages: correlations between multivariate biological patterns and environmental variables. Estuar. Coast. Shelf Sci. 56, 717734.
  • [8]
    Muyzer, G, DeWaal, E, Uitterlinden, G, Ingeny, B (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695700.
  • [9]
    Buchholz-Cleven, B.E.E, Rattunde, B, Straub, K.L (1997) Screening for genetic diversity of isolates of anaerobic Fe(II) oxidising bacteria using DGGE and whole cell hybridisation. Syst. Appl. Microbiol. 20, 301309.
  • [10]
    Murray, A.E, Hollibaugh, J.T, Orrego, C (1996) Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl. Environ. Microbiol. 62, 26762680.
  • [11]
    Nubel, U, Engelen, B, Felske, A, Snaidr, J, Wieshuber, A, Amann, R.I, Wolfgang, L, Backhaus, H (1996) Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178, 56365643.
  • [12]
    Satokari, R.M, Vaughan, E.E, Akkermans, A.D.L, Saarela, M, de Vos, W.M (2001) Bifidobacterial diversity in human faeces detected by genus specific PCR and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 67, 504513.
  • [13]
    Martin-Laurent, F, Philippot, L, Hallet, S, Chaisson, R, Germon, J.C, Soulas, G, Catroux, G (2001) DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl. Environ. Microbiol. 67, 23542359.
  • [14]
    Schmalenberger, A, Schwieger, F, Tebbe, C.C (2001) Effect of primers hybridising to different evolutionarily conserved regions of the small subunit rRNA gene in PCR based microbial community analyses and genetic profiling. Appl. Environ. Microbiol. 67, 35573563.
  • [15]
    Suzuki, M.T, Giovannoni, S.J (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62, 625630.
  • [16]
    Rochelle, P.A, Cragg, B.A, Fry, J.C, Parkes, R.J, Weightman, A.J (1994) Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis. FEMS Microbiol. Ecol. 15, 215226.
  • [17]
    Roling, W.F.M, van Breukelen, B.M, Braster, M, Goeltom, M.T, Groen, J, van Verseveld, H.W (2000) Analysis of microbial communities in a landfill leachate polluted aquifer using a new method for anaerobic physiological profiling and 16S rDNA based fingerprinting. Microb. Ecol. 40, 177188.
  • [18]
    Schauer, M, Massana, R, Pedros-Alio, C (2000) Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting. FEMS Microbiol. Ecol. 33, 5159.
  • [19]
    van Hannen, E.J, Mooij, W, van Agterveld, M.P, Gons, H.J, Laanbroek, H.J (1999) Detritus dependent development of the microbial community in an experimental system: qualitative analysis by denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65, 24782484.
  • [20]
    Boon, N, De Windt, W, Verstraete, W, Top, E.M (2002) Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol. Ecol. 39, 101112.
  • [21]
    Moeseneder, M.M, Arrieta, J.M, Muyzer, G, Winter, C, Herndl, G.J (1999) Optimization of terminal restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65, 35183525.
  • [22]
    Maidak, B.L, Cole, J.R, Lilburn, T.G, Parker, C.T.Jr, Saxman, P.R, Farris, R.J, Garrity, G.M, Olsen, G.J, Schmidt, T.M, Tiedje, J.M (2001) The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 29, 173174.
  • [23]
    Altschul, S.F, Gish, W, Miller, W, Myers, E.W, Lipman, D.J (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403410.
  • [24]
    Felsenstein, J. (1995) PHYLIP v.3.57c (phylogenetic inference program package). University of Washington, Seattle, WA.
  • [25]
    Keswani, J, Whitman, W.B (2001) Relationship of 16S rRNA sequence similarity to DAN hybridization in prokaryotes. Int. J. Syst. Evol. Microbiol. 51, 667678.
  • [26]
    Singleton, D.R, Furlong, M.A, Rathbun, S.L, Whitman, W.B (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67, 43744376.
  • [27]
    Bowman, J.P, Rea, S.M, McCammonm, S.A, McMeekin, T.A (2000) Diversity and community structure within anoxic sediment from marine salinity meromictic lakes and a coastal meromictic marine basin, Vestfold Hills, Eastern Antarctica. Environ. Microbiol. 2, 227237.
  • [28]
    Ravenschlag, K, Sahm, K, Pernthaler, J, Amann, R (1999) High bacterial diversity in permanently cold marine sediments. Appl. Environ. Microbiol. 65, 39823989.
  • [29]
    Ferrari, V.C, Hollibaugh, J.T (1999) Distribution of microbial assemblages in the Central Arctic Ocean Basin studied by PCR/DGGE: analysis of a large data set. Hydrobiology 401, 5568.