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References

  • [1]
    Kunst, F., Ogasawara, N., Moszer, I. (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390, 249256.
  • [2]
    Horsburgh, M.J., Moir, A. (1999) Sigma M, an ECF RNA polymerase sigma factor of Bacillus subtilis 168, is essential for growth and survival in high concentrations of salt. Mol. Microbiol. 32, 4150.
  • [3]
    Sorokin, A., Bolotin, A., Purnelle, B., Hilbert, H., Lauber, J., Dusterhoft, A., Ehrlich, S.D. (1997) Sequence of the Bacillus subtilis genome region in the vicinity of the lev operon reveals two new extracytoplasmic function RNA polymerase sigma factors SigV and SigZ. Microbiology 143, 29392943.
  • [4]
    Huang, X., Decatur, A., Sorokin, A., Helmann, J.D. (1998) Promoter recognition by Bacillus subtilisσW: autoregulation and partial overlap with σX regulon. J. Bacteriol. 180, 37653777.
  • [5]
    Qiu, J., Helmann, J.D. (2001) The −10 region is a key promoter specificity determinant for the Bacillus subtilis extracytoplasmic-function σ factors σX and σW. J. Bacteriol. 183, 19211927.
  • [6]
    Sorokin, A., Zumstein, E., Azevedo, V., Ehrlich, S.D., Serror, P. (1993) The organization of the Bacillus subtilis 168 chromosome region between the spoVA and serA genetic loci, based on sequence data. Mol. Microbiol. 10, 385395.
  • [7]
    Yoshida, K., Shindo, K., Sano, H., Seki, S., Fujimura, M., Yanai, N., Miwa, Y., Fujita, Y. (1996) Sequencing of a 65 kb region of the Bacillus subtilis genome containing the lic and cel loci, and creation of a 177 kb contig covering the gnt-sacXY region. Microbiology 142, 31133123.
  • [8]
    Sorokin, A., Bolotin, A., Purnelle, B., Hilbert, H., Lauber, J., Dusterhoft, A., Ehrlich, S.D. (1997) Sequence of the Bacillus subtilis genome region in the vicinity of the lev operon reveals two new extracytoplasmic function RNA polymerase sigma factors SigV and SigZ. Microbiology 143, 29392943.
  • [9]
    Liu, H., Haga, K., Yasumoto, K., Ohashi, Y., Yoshikawa, H., Takahashi, H. (1997) Sequence and analysis of a 31 kb segment of the Bacillus subtilis chromosome in the area of the rrnH and rrnG operons. Microbiology 143, 27632767.
  • [10]
    Lonetto, M.A., Brown, K.L., Rudd, K.E., Buttner, M.J. (1994) Analysis of the Streptomyces coelicolor sigE gene reveals the existance of a subfamily of eubacterial RNA polymerase σ factors involved in the regulation of extracytoplasmic function. Proc. Natl. Acad. Sci. USA 91, 75737577.
  • [11]
    Raivio, T.L., Silhavy, T.J. (2001) Periplasmic stress and ECF sigma factors. Annu. Rev. Microbiol. 55, 591624.
  • [12]
    Wiegert, T., Homuth, G., Versteeg, S., Schumann, W. (2001) Alkaline shock induces the Bacillus subtilisσW regulon. Mol. Microbiol. 41, 5971.
  • [13]
    Huang, X., Decatur, A., Sorokin, A., Helmann, J.D. (1997) The Bacillus subtilisσX protein is an extracytoplasmic function sigma factor contributing to survival at high temperature. J. Bacteriol. 179, 29152921.
  • [14]
    Cao, M., Bernat, B.A., Wang, Z., Armstrong, R.N., Helmann, J.D. (2001) FosB, a cysteine-dependent fosfomycin resistance protein under the control of σW, an extracytoplasmic-fanction σ factor in Bacillus subtilis. J. Bacteriol. 183, 23802383.
  • [15]
    Huang, X., Gaballa, A., Cao, M., Helmann, J.D. (1999) Identification of target promoters for the Bacillus subtilis extracytoplasmic function sigma factor, sigma W. Mol. Microbiol. 31, 361371.
  • [16]
    Huang, X., Helmann, J.D. (1998) Identification of target promoters for the Bacillus subtilis sigma X factor using a consensus-directed search. J. Mol. Biol. 279, 165173.
  • [17]
    Cao, M., Kpbel, P.A., Morshedi, M.M., Wu, M.F.W., Paddon, C., Helmann, J.D. (2002) Defining the Bacillus subtilisσW regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches. J. Mol. Biol. 316, 443457.
  • [18]
    Fawcett, P., Eichenberger, P., Losick, R., Youngman, P. (2000) The transcriptional profile of early to middle sporulation in Bacillus subtilis. Proc. Natl. Acad. Sci. USA 97, 80638068.
  • [19]
    Caldwell, R., Sapolsky, R., Weyler, W., Maile, R.R., Causey, S.C., Ferrari, E. (2001) Correlation between Bacillus subtilis scoC phenotype and gene expression determined using microarrays for transcriptome analysis. J. Bacteriol. 183, 73297340.
  • [20]
    Moreno, M.S., Schneider, B.L., Maile, R.R., Weyler, W., Saier, M.H. Jr. (2001) Catabolite repression mediated by the CcpA protein in Bacillus subtilis: novel modes of regulation revealed by whole-genome analyses. Mol. Microbiol. 39, 13661381.
  • [21]
    Ogura, M., Yamaguchi, H., Yoshida, K., Fujita, Y., Tanaka, T. (2001) DNA microarray analysis of Bacillus subtilis DegU, ComA and PhoP regulons: an approach to comprehensive analysis of Bacillus subtilis two-component regulatory systems. Nucleic Acids Res. 29, 38043813.
  • [22]
    Petersohn, A., Brigulia, M., Hass, S., Hoheisel, J.D., Volker, U., Hecker, M. (2001) Global analysis of the general stress response of Bacillus subtilis. J. Bacteriol. 183, 56175631.
  • [23]
    Price, C.W., Fawcett, P., Ceremonie, H., Su, N., Murphy, C.K., Youngman, P. (2001) Genome-wide analysis of the general stress response in Bacillus subtilis. Mol. Microbiol. 41, 757774.
  • [24]
    Berka, R.M., Hahn, J., Albano, M., Draskovic, I., Persuh, M., Cui, X., Sloma, A., Widner, W., Dubnau, D. (2002) Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK. Mol. Microbiol. 43, 13311345.
  • [25]
    Britton, R.A., Eichenberger, P., Gonzalez-Pastor, J.E., Fawcett, P., Monson, R., Losick, R., Grossman, A.D. (2002) Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis. J. Bacteriol. 184, 48814890.
  • [26]
    Cao, M., Wang, T., Ye, R., Helmann, J.D. (2002) Antibiotics that inhibit cell wall biosynthesis induce expression of the Bacillus subtilisσW and σM regulons. Mol. Microbiol. 45, 12671276.
  • [27]
    Kaan, T., Homuth, G., Mader, U., Bandow, J., Schweder, T. (2002) Genome-wide transcriptional profiling of the Bacillus subtilis cold-shock response. Microbiology 148, 34413455.
  • [28]
    Ogura, M., Yamaguchi, H., Kobayashi, K., Ogasawara, N., Fujita, Y., Tanaka, T. (2002) Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J. Bacteriol. 184, 23442351.
  • [29]
    Kobayashi, K., Ogura, M., Yamaguchi, H., Yoshida, K., Ogasawara, N., Tanaka, T., Fujita, Y. (2001) The comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory system. J. Bacteriol. 183, 73657370.
  • [30]
    Yansura, D.G., Henner, D.J. (1986) Use of the Escherichia coli lac repressor and operator to control gene expression in Bacillus subtilis. Proc. Natl. Acad. Sci. USA 81, 439443.
  • [31]
    Stragier, P., Bonamy, C., Karmazyn-Campelli, C. (1988) Processing of a sporulation sigma factor in Bacillus subtilis: How morphological structure could control gene expression. Cell 52, 697704.
  • [32]
    Ohshima, H., Matsuoka, S., Asai, K., Sadaie, Y. (2002) Molecular organization of intrinsic restriction and modification genes Bsu M of Bacillus subtilis Marburg. J. Bacteriol. 184, 381389.
  • [33]
    Fukuchi, K., Kasahara, Y., Asai, K., Kobayashi, K., Moriya, S., Ogasawara, N. (2000) The essential two-component regulatory system encoded by yycF and yycG modulates expression of the ftsAZ operon in Bacillus subtilis. Microbiology 146, 15731583.
  • [34]
    Vagner, V., Dervyn, E., Ehrlich, S.D. (1998) A vector for systematic gene inactivation in Bacillus subtilis. Microbiology 144, 30973104.
  • [35]
    Sadaie, Y. (1998) secA341 mutation inhibition of expression of the Bacillus subtilis protease gene, aprE. Biosci. Biotechnol. Biochem. 62, 17841787.
  • [36]
    Yoshida, K., Kobayashi, K., Miwa, Y., Kang, C.-M., Matsunaga, M., Yamaguchi, H., Tojo, S., Yamamoto, M., Nishi, R., Ogasawara, N., Nakayama, T., Fujita, Y. (2001) Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Res. 29, 683692.