• [1]
    Goodacre, R., Timmins, É.M., Burton, R., Kaderbhai, N., Woodward, A., Kell, D.B., Rooney, P.J. (1998) Rapid identification of urinary tract infection bacteria using hyperspectral, whole organism fingerprinting and artificial neural networks. Microbiology 144, 11571170.
  • [2]
    Magee, J.T. (1993) Whole-organism fingerprinting. In: Handbook of New Bacterial Systematics (Goodfellow, M. and O'Donnell, A.G., Eds.), pp. 383–427. Academic Press, London.
  • [3]
    Fiehn, O. (2002) Metabolomics – the link between genotypes and phenotypes. Plant Mol. Biol. 48, 155171.
  • [4]
    Maquelin, K., Choo-Smith, L.P., van Vreeswijk, T., Endtz, H.P., Smith, B., Bennett, R., Bruining, H.A., Puppels, G.J. (2000) Raman spectroscopic method for identification of clinically relevant microorganisms growing on solid culture medium. Anal. Chem. 72, 1219.
  • [5]
    Maquelin, K., Choo-Smith, L.P., Endtz, H.P., Bruining, H.A., Puppels, G.J. (2002) Rapid identification of Candida species by confocal Raman micro spectroscopy. J. Clin. Microbiol. 40, 594600.
  • [6]
    Maquelin, K., Kirschner, C., Choo-Smith, L.P., van den Braak, N., Endtz, H.P., Naumann, D., Puppels, G.J. (2002) Identification of medically relevant microorganisms by vibrational spectroscopy. J. Microbiol. Methods 51, 255271.
  • [7]
    Naumann, D., Helm, D., Labischinski, H. (1991) Microbiological characterizations by FT-IR spectroscopy. Nature 351, 8182.
  • [8]
    Lay, J.O.J. (2000) MALDI-TOF mass spectrometry and bacterial taxonomy. Trends Anal. Chem. 19, 507516.
  • [9]
    Vaidyanathan, S., Rowland, J.J., Kell, D.B., Goodacre, R. (2001) Discrimination of aerobic endospore-forming bacteria via electrospray-ionization mass spectrometry of whole cell suspensions. Anal. Chem. 73, 41344144.
  • [10]
    Spiro, T.G. (1974) Resonance Raman spectroscopy: a new structural probe for biological chromophores. Acc. Chem. Res. 7, 339344.
  • [11]
    Moskovits, M. (1985) Surface-enhanced spectroscopy. Rev. Mod. Phys. 57, 783826.
  • [12]
    Nie, S.M., Emery, S.R. (1997) Probing single molecules and single nanoparticles by surface-enhanced Raman scattering. Science 275, 11021106.
  • [13]
    Jarvis, R.M., Goodacre, R. (2004) Rapid discrimination of bacteria using surface enhanced Raman spectroscopy. Anal. Chem. 76, 4047.
  • [14]
    Asher, S.A., Bormett, R.W., Chen, X.G., Lemmon, D.H., Cho, N., Peterson, P., Arrigoni, M., Spinelli, L., Cannon, J. (1993) UV resonance Raman spectroscopy using a new CW laser source – convenience and experimental simplicity. Appl. Spectrosc. 47, 628633.
  • [15]
    Manoharan, R., Ghiamati, E., Dalterio, R.A., Britton, K.A., Nelson, W.H., Sperry, J.F. (1990) UV resonance Raman spectra of bacteria, bacterial spores, protoplasts and calcium dipicolinate. J. Microbiol. Methods 115.
  • [16]
    Chadha, S., Manoharan, R., Moenne-Loccz, P., Nelson, W.H., Peticolas, W.L., Sperry, J.F. (1993) Comparison of the UV resonance Raman spectra of bacteria, bacterial cell walls, and ribosomes excited in the deep UV. Appl. Spectrosc. 47, 3843.
  • [17]
    Wu, Q., Hamilton, T., Nelson, W.H., Elliott, S., Sperry, J.F., Wu, M. (2001) UV Raman spectral intensities of E. coli and other bacteria excited at 228.9, 244.0 and 248.2 nm. Anal. Chem. 73, 34323440.
  • [18]
    Chen, X.G., Lemmon, D.H., Bormett, R.W., Asher, S.A. (1992) Convenient microsampling system for UV resonance Raman spectroscopy. Appl. Spectrosc. 47, 248249.
  • [19]
    Slack, R.C.B. (1995) Urinary infections. In: Antimicrobial Chemotherapy (Greenwood, D., Ed.), pp. 243–250. Oxford University Press, Oxford.
  • [20]
    Kassama, Y., Rooney, P.J., Goodacre, R. (2002) Fluorescent amplified fragment length polymorphism probabilistic database for identification of bacterial isolates from urinary tract infections. J. Clin. Microbiol. 40, 27952800.
  • [21]
    Savitzky, A., Golay, M.J.E. (1964) Smoothing and differentiation of data by simplified least squares procedures. Anal. Chem. 36, 16271633.
  • [22]
    Timmins, É.M., Howell, S.A., Alsberg, B.K., Noble, W.C., Goodacre, R. (1998) Rapid differentiation of closely related Candida species and strains by pyrolysis mass spectrometry and Fourier transform infrared spectroscopy. J. Clin. Microbiol. 36, 367374.
  • [23]
    Jolliffe, I.T. (1986) Principal Component Analysis. Springer-Verlag, New York.
  • [24]
    Manly, B.F.J. (1994) Multivariate Statistical Methods: A Primer, 2 edn. Chapman and Hall/CRC, New York.
  • [25]
    Radovic, B.S., Goodacre, R., Anklam, E. (2001) Contribution of pyrolysis-mass spectrometry (Py-MS) to authenticity testing of honey. J. Anal. Appl. Pyrolysis 60, 7987.
  • [26]
    Dalterio, R.A., Nelson, W.H., Britt, D., Sperry, J.F. (1987) Appl. Spectrosc. 41 417423.
  • [27]
    Manoharan, R., Ghiamati, E., Chadha, S., Nelson, W.H., Sperry, J.F. (1993) Effect of cultural conditions on deep UV resonance Raman spectra of bacteria. Appl. Spectrosc. 47, 21452150.
  • [28]
    Nelson, W.H., Manoharan, R., Sperry, J.F. (1992) UV resonance Raman studies of bacteria. Appl. Spectrosc. Rev. 27, 67124.