• [1]
    Kester, R.A., de Boer, L., Laanbroek, H.J. (1996) Short exposure to acetylene to distinguish between nitrifier and denitrifier nitrous oxide production in soil and sediment samples. FEMS Microbiol. Ecol. 20, 111120.
  • [2]
    Kim, K.-R., Craig, H. (1993) Nitrogen-15 and oxygen-18 characteristics of nitrous oxide: a global perspective. Science 262, 18551857.
  • [3]
    Perez, T., Trumbore, S.E., Tyler, S.C., Davidson, E.A., Keller, M., de Camargo, P.B. (2000) Isotopic variability of N2O emissions from tropical forest soils. Globe Biogeochem. Cyc. 14, 525535.
  • [4]
    Dore, J.E., Karl, D.M. (1996) Nitrification in the euphotic zone as a source for nitrite, nitrate, and nitrous oxide at Station ALOHA. Limnol. Oceanogr. 41, 16191628.
  • [5]
    Dore, J.E., Popp, B.N., Karl, D.M., Sansone, F.J. (1998) A large source of atmospheric nitrous oxide from subtropical North Pacific surface waters. Nature 396, 6366.
  • [6]
    Kim, K.-R., Craig, H. (1990) Two-isotope characterization of N2O in the Pacific Ocean and constraints on its origin in deep water. Nature 347, 5861.
  • [7]
    Ostrom, N.E., Russ, M.E., Popp, B., Rust, T.M., Karl, D.M. (2000) Mechanisms of nitrous oxide production in the subtropical North Pacific based on determinations of the isotopic abundances of nitrous oxide and di-oxygen. Chemosph. Glob. Change. Sci. 2, 281290.
  • [8]
    Yoshinari, T. (1976) Nitrous oxide in the sea. Mar. Chem. 4, 189202.
  • [9]
    Crutzen, P.J. (1970) The influence of nitrogen oxides on the atmospheric ozone content. Quart. J. Royal Met. Soc. 96, 320325.
  • [10]
    Yung, Y.L., Wang, W.C., Lacis, A.A. (1976) Greenhouse effect due to atmospheric nitrous-oxide. Geophys. Res. Lett. 3, 619621.
  • [11]
    Codispoti, L.A., Christensen, J.P. (1985) Nitrification, denitrification, and nitrous oxide cycling in the eastern tropical Pacific Ocean. Mar. Chem. 16, 277300.
  • [12]
    Yoshida, N., Hattori, A., Saino, T., Matsuo, S., Wada, E. 15N/14N ratio of dissolved N2O in the eastern tropical Pacific Ocean. Nature. 307, 1984, 442444.
  • [13]
    Avrahami, S., Conrad, R., Braker, G. (2002) Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl. Environ. Microbiol. 68, 56855692.
  • [14]
    Hooper, A.B., Arciero, D.M., DiSpirto, A.A., Fuchs, J., Johnson, M., LaQuier, F., Mundfrom, G., McTavish, H. Production of nitrite and N2O by the ammonia-oxidizing nitrifiersGresshoff, Stacey, Newton, Eds. Nitrogen Fixation: Achievements and Objectives 1990, Chapman & Hall, New York, Stacey Gresshoff, Newton. Nitrogen Fixation: Achievements and Objectives. 1990. Chapman & Hall New York.
  • [15]
    Poth, M., Focht, D.D. 15N Kinetic analysis of N2O produced by Nitrosomonas europaea: an examination of nitrifier denitrification. Appl. Environ. Microbiol. 49, 1985, 11341141.
  • [16]
    Ritchie, G.A.F., Nicholas, D.J.D. (1972) Identification of the sources of nitrous oxide produced by oxidative and reductive processes in Nitrosomonas europaea. Biochem. J. 126, 11811191.
  • [17]
    Hooper, A.B. (1968) A nitrite-reducing enzyme from Nitrosomonas europaea. Biochim. Biophys. Acta 162, 4965.
  • [18]
    Miller, D.J., Wood, P.M. (1983) The soluble cytochrome oxidase of Nitrosomonas europaea. J. Gen. Microbiol. 129, 16451650.
  • [19]
    Ritchie, G.A.F., Nicholas, D.J.D. (1974) The partial characterization of purified nitrite reductase and hydroxylamine oxidase from Nitrosomonas europaea. Biochem. J. 138, 471480.
  • [20]
    Chain, P., Lamerdin, J., Larimer, F., Regala, W., Lao, V., Land, M., Hauser, L., Hooper, A., Klotz, M., Norton, J., Sayavedra-Soto, L., Arciero, D., Hommes, N., Whittaker, M., Arp, D. (2003) Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. J. Bacteriol. 185, 27592773.
  • [21]
    Casciotti, K.L., Ward, B.B. (2001) Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 67, 22132221.
  • [22]
    Beaumont, H.J.E., Hommes, N.G., Sayavedra-Soto, L.A., Arp, D.J., Arciero, D.M., Hooper, A.B., Westerhoff, H.V., van Spanning, R.J.M. (2002) Nitrite reductase of Nitrosomonas europaea is not essential for production of gaseous nitrogen oxides and confers tolerance to nitrite. J. Bacteriol. 184, 25572560.
  • [23]
    Beaumont, H.J.E., van Schooten, B., Lens, S.I., Westerhoff, H.V., van Spanning, R.J.M. (2004) Nitrosomonas europaea expresses a nitric oxide reductase during nitrification. J. Bacteriol. 186, 44174421.
  • [24]
    Busch, A., Friedrich, B., Cramm, R. (2002) Characterization of the norB gene, encoding nitric oxide reductase, in the nondenitrifying cyanobacterium Synechocystis sp. strain PCC6803. Appl. Environ. Microbiol. 68, 668672.
  • [25]
    Braker, G., Zhou, J.Z., Wu, L.Y., Devol, A.H., Tiedje, J.M. (2000) Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities. Appl. Environ. Microbiol. 66, 20962104.
  • [26]
    Braker, G., Alaya-del-Rio, H.L., Devol, A.H., Fesefeldt, A., Tiedje, J.M. (2001) Community structure of denitrifiers, Bacteria, and Archaea along redox gradients in Pacific northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Appl. Environ. Microbiol. 67, 18931901.
  • [27]
    Prieme, A., Braker, G., Tiedje, J.M. (2002) Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl. Environ. Microbiol. 68, 18931900.
  • [28]
    Taroncher-Oldenburg, G., Griner, E.M., Francis, C.A., Ward, B.B. (2003) Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl. Environ. Microbiol. 69, 11591171.
  • [29]
    Ward, B.B, Cockroft, A.R., Kilpatrick, K.A. (1993) Antibody and DNA probes for detection of nitrite reductase in seawater. J. Gen. Microbiol. 139, 22852293.
  • [30]
    van der Oost, J., de Boer, A.P.N., de Gier, J.-W.L., Zumft, W.G., Stouthamer, A.H., van Spanning, R.J.M. (1994) The heme-copper oxidase family consists of three distinct types of terminal oxidases and is related to nitric oxide reductase. FEMS Microbiol. Lett. 121, 110.
  • [31]
    Hendriks, J., Oubrie, A., Castresana, J., Urbani, A., Gemeinhardt, S., Saraste, M. (2000) Nitric oxide reductases in bacteria. Biochim. Biophys. Acta 1459, 266273.
  • [32]
    Hendriks, J., Warne, A., Gohlke, U. (1998) The active site of the bacterial nitric oxide reductase is a dinuclear iron center. Biochemistry 37, 1310213109.
  • [33]
    Sakurai, T., Sakurai, N., Matsumoto, H., Hirota, S., Yamauchi, O. (1998) Roles of four iron centers in Paracoccus halodenitrificans nitric oxide reductase. Biochem. Biophys. Res. Commun. 251, 248251.
  • [34]
    Cramm, R., Siddiqui, R.A., Friedrich, B. (1997) Two isofunctional nitric oxide reductases in Alcaligenes eutrophus H16. J. Bacteriol. 179, 67696777.
  • [35]
    de Vries, S., Strampraad, M.J.F., Schroder, I. Biochemical characterization of the reductases involved in denitrification in the hyperthermophilic Pyrobaculum aerophilum and purification of the NO reductase. J. Inorg. Biochem. 86, 2001, 199.
  • [36]
    Cramm, R., Pohlmann, A., Friedrich, B. (1999) Purification and characterization of the single-component nitric oxide reductase from Ralstonia eutropha H16. FEBS Lett. 460, 610.
  • [37]
    Braker, G., Tiedje, J.M. (2003) Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Appl. Environ. Microbiol. 69, 34763483.
  • [38]
    Soriano, S., Walker, N. (1968) Isolation of ammonia-oxidizing autotrophic bacteria. J. Appl. Bacteriol. 31, 493507.
  • [39]
    Ward, B.B. (1987) Kinetic studies on ammonia and methane oxidation by Nitrosococcus oceanus. Arch. Microbiol. 147, 126133.
  • [40]
    Ausubel, F.M., Brent, R., Kingston, R.E., Moore, E.E., Smith, J.A., Sideman, J.G., Struhl, K., Eds. Current Protocols in Molecular Biology 1987, John Wiley and Sons, New York, NY.
  • [41]
    Thompson, J.D., Higgins, D.G., Gibson, T.J. (1994) CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 46734680.
  • [42]
    Butland, G., Spiro, S., Watmough, N.J., Richardson, D.J. (2001) Two conserved glutamates in the bacterial nitric oxide reductase are essential for activity but not assembly of the enzyme. J. Bacteriol. 183, 189199.
  • [43]
    Matsuda, Y., Inamori, K., Osake, T., Eguchi, A., Wantabe, A., Kawabata, S., Iba, K., Arata, H. (2002) Nitric oxide reductase homologue that contains copper atom and has cytochrome c-oxidase activity from an aerobic phototrophic bacterium Roseobacter denitrificans. J. Biochem. 131, 791800.
  • [44]
    Bano, N., Hollibaugh, J.T. (2000) Diversity and distribution of DNA sequences with affinity to ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in the Arctic Ocean. Appl. Environ. Microbiol. 66, 19601969.
  • [45]
    Hollibaugh, J.T., Bano, N., Ducklow, H. (2002) Widespread distribution in polar oceans of a 16S rRNA gene sequence with affinity to Nitrosospira-like ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 68, 14781484.
  • [46]
    T.J. Goreau W.A. Kaplan S.C. Wofsy M.B. McElroy F.W. Valois S.W. Watson Production of NO 2 - and N 2 O by nitrifying bacteria at reduced concentrations of oxygen Appl. Environ. Microbiol. 40 1980 526 532.
  • [47]
    Q.-Q. Jiang L.R. Bakken Nitrous oxide production and methane oxidation by different ammonia-oxidizing bacteria 1999.
  • [48]
    Wrage, N., Velthof, G.L., Oenema, O., Laanbroek, H.J. (2004) Acetylene and oxygen as inhibitors of nitrous oxide production in Nitrosomonas europaea and Nitrosospira briensis: a cautionary tale. FEMS Microbiol. Ecol. 47, 1318.