• [1]
    Perry, J.J., Staley, J.T., Lory, S. Microbial Life: 2002, Sinauer Associates Inc, Sunderland, MA, USA pp. 1–811.
  • [2]
    Glöckner, F.O., Zaichikov, E., Belkova, N., Denissova, L., Pernthaler, J., Pernthaler, A., Amann, R. (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl. Environ. Microbiol. 66, 50535061.
  • [3]
    Sekar, R., Pernthaler, A., Pernthaler, J., Warnecke, F., Posch, T., Amann, R. (2003) An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl. Environ. Microbiol. 69, 29282935.
  • [4]
    Woo, J.H., Kitamura, E., Myouga, H., Kamei, Y. (2002) An antifungal protein from the marine bacterium Streptomyces sp. strain AP77 is specific for Pythium porphyrae, a causative agent of red rot disease in Porphyra spp. Appl. Environ. Microbiol. 68, 26662675.
  • [5]
    Grein, A., Meyers, S.P. (1958) Growth characteristics., antibiotic production of actinomycetes isolated from littoral sediments and materials suspended in sea water. J. Bacteriol. 76, 457463.
  • [6]
    Schumacher, R.W., Harrigan, B.L., Davidson, B.S. (2001) Kahakamides A and B, new neosidomycin metabolites from a marine-derived actinomycete. Tetrahedron Lett. 42, 51335135.
  • [7]
    Kubota, N.K., Ohta, S., Ohta, E., Koizumi, F., Suzuki, M., Ichimura, M., Rahayu, E.S., Ikegami, S. (2004) Two new analogues of the cytotoxic substance BE-52211 from Streptomyces sp. J. Nat. Prod. 67, 8587.
  • [8]
    Scholler, C.E.G., Gurtler, H., Pedersen, R., Molin, S., Wilkins, K. (2002) Volatile metabolites from actinomycetes. J. Agric. Food Chem. 50, 26152621.
  • [9]
    Smith, V.H., Sieber-Denlinger, J., de Noyelles, F., Campbell, S., Pan, S., Randtke, S.J., Blain, G.T., Strasser, V.A. (2002) Managing taste and odor problems in a eutrophic drinking water reservoir. Lake Res. Manage. 18, 319323.
  • [10]
    Howgate, P. (2004) Tainting of farmed fish by geosmin and 2-methyl-iso-borneol: a review of sensory aspects and of uptake/depuration. Aquaculture 234, 155181.
  • [11]
    Robertson, R.F. and Lawton, L.A. (2003) Off-flavor problems and a potential solution within the UK trout industry. ACS Symposium Series: off-flavors in aquaculture, pp. 55–68
  • [12]
    Hu, Q., Sommerfeld, M., Baker, L., Westerhoff, P. (2003) Canal wall brushing – a control measure for taste and odour problems in drinking water supplies in and environments. J. Water. Supply Res. Technol. – Aqua 52, 545554.
  • [13]
    Izaguirre, G., Taylor, W.D. (1998) A Pseudanabaena species from Castaic Lake, California, that produces 2-methylisoborneol. Water Res. 32, 16731677.
  • [14]
    Durrer, M., Zimmermann, U., Juttner, F. (1999) Dissolved and particle-bound geosmin in a mesotrophic lake (Lake Zurich): spatial and seasonal distribution and the effect of grazers. Water Res. 33, 36283636.
  • [15]
    Lanciotti, E., Santini, C., Lupi, E., Burrini, D. (2003) Actinomycetes, cyanobacteria and algae causing tastes and odours in water of the River Arno used for the water supply of Florence. J. Water. Supply Res. Technol. – Aqua 52, 489500.
  • [16]
    Klausen, C., Jørgensen, N.O.G., Nybroe, O., Strobel, B.W. and Warnecke, F. (2003) The occurrence of actinomycetes and geosmin in freshwater aquacultures in Denmark. American Society for Microbiology Abstracts 2003, pp. 409
  • [17]
    Thomsen, T.R., Kjellerup, B.V., Nielsen, J.L., Hugenholtz, P., Nielsen, P.H. (2002) In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth. Environ. Microbiol. 4, 383391.
  • [18]
    Fuhrman, J.A., Ammerman, J.W., Azam, F. (1980) Bacterioplankton in the coastal euphotic zone: distribution, activity and possible relationships with phytoplankton. Mar. Biol. 60, 201207.
  • [19]
    Smith, D.C., Azam, F. (1992) A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3H-leucine. Mar. Microb. Food Webs 6, 107114.
  • [20]
    Smits, J.D., Riemann, B. (1988) Calculation of cell production from (3H]thymidine incorporation with freshwater bacteria. Appl. Environ. Microbiol. 54, 22132219.
  • [21]
    Edwards, U., Rogall, T., Blocker, H., Emde, M., Bottger, E.C. (1989) Isolation and direct complete nucleotide determination of entire genes – characterization of a gene coding for 16S-ribosomal RNA. Nucleic Acids Res. 17, 78437853.
  • [22]
    D.J. Lane 16S/23S rRNA sequencing E. Stackebrandt M. Goodfellow Nucleic Acid Techniques in Bacterial Systematics 1991 Wiley New York 115 175.
  • [23]
    G. Muyzer T. Brinkhoff U. Nübel C. Santegoeds H. Schäfer C. Wawer Denaturing gradient gel electrophoresis (DGGE) in microbial ecology A.D.L. Akkermans J.D. van Elsas F.J. de Bruijn Molecular Microbial Ecology Manual 1998 Kluwer Academic Publishers Dordrecht 1 27.
  • [24]
    Altschul, S.F., Gish, W., Miller, W., Meyers, E.W., Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403410.
  • [25]
    Nielsen, J.L., Juretschko, S., Wagner, M., Nielsen, P.H. (2002) Abundance and phylogenetic affiliation of iron reducers in activated sludge as assessed by fluorescence in situ hybridization and microautoradiography. Appl. Environ. Microbiol. 68, 46294636.
  • [26]
    Lee, N., Nielsen, P.H., Andreasen, K.H., Juretschko, S., Nielsen, J.L., Schleifer, K.H., Wagner, M. (1999) Combination of fluorescent in situ hybridization and microautoradiography – a new tool for structure–function analyses in microbial ecology. Appl. Environ. Microbiol. 65, 12891297.
  • [27]
    Pernthaler, A., Pernthaler, J., Amann, R. (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68, 30943101.
  • [28]
    Saito, A., Tokuyama, T., Tanaka, A., Oritani, T., Fuchigami, K. (1999) Microbiological degradation of geosmin. Water Res. 33, 30333036.
  • [29]
    Burdige, D.J., Zheng, S.L. (1998) The biogeochemical cycling of dissolved organic nitrogen in estuarine sediments. Limnol. Oceanogr. 43, 17961813.
  • [30]
    Rheims, H., Felske, A., Seufert, S., Stackebrandt, E. (1999) Molecular monitoring of an uncultured group of the class Actinobacteria in two terrestrial environments. J. Microbiol. Meth. 36, 6575.
  • [31]
    Davenport, R.J., Curtis, T.P., Goodfellow, M., Stainsby, F.M., Bingley, M. (2000) Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants. Appl. Environ. Microbiol. 66, 11581166.
  • [32]
    Thirup, L., Johnsen, K., Winding, A. (2001) Succession of indigenous Pseudomonas spp. and actinomycetes on barley roots affected by the antagonistic strain Pseudomonas fluorescens DR54 and the fungicide Imazalil. Appl. Environ. Microbiol. 67, 11471153.
  • [33]
    Pisano, M.A., Sommer, M.J., Taras, L. (1992) Bioactivity of chitinolytic actinomycetes of marine origin. Appl. Microbiol. Biotechnol. 36, 553555.
  • [34]
    Tiquia, S.M., Wan, J.H.C., Tam, N.F.Y. (2002) Microbial population dynamics and enzyme activities during composting. Compost Sci. Util. 10, 150161.
  • [35]
    Burkert, U., Warnecke, F., Babenzien, D., Zwirnmann, E., Pernthaler, J. (2003) Members of a readily enriched β-proteobacterial clade are common in surface waters of a humic lake. Appl. Environ. Microbiol. 69, 65506559.
  • [36]
    Pollak, F.C., Berger, R.G. (1996) Geosmin and related volatiles in bioreactor-cultured Streptomyces citreus CBS 109.60. Appl. Environ. Microbiol. 62, 12951299.
  • [37]
    Dionigi, C.P., Millie, D.F., Spanier, A.M., Johnsen, P.B. (1992) Spore and geosmin production by Streptomyces tendae on several media. J. Agric. Food Chem. 40, 122125.
  • [38]
    Schrader, K.K., Blevins, W.T. (2001) Effects of carbon source, phosphorus concentration, and several micronutrients on biomass and geosmin production by Streptomyces halstedii. J. Ind. Microbiol. Biotechnol. 26, 241247.
  • [39]
    Gust, B., Challis, G.L., Fowler, K., Kieser, T., Chater, K.F. (2003) PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proc. Natl. Acad. Sci. USA 100, 15411546.
  • [40]
    Aoyama, K., Tomita, B., Chaya, K. (1993) Influence of incubation-temperature on production of earthy-musty odor substances by actinomycetes. Jpn. J. Toxicol. Environ. Health 39, 207212.
  • [41]
    Sugiura, N., Nakano, K. (2000) Causative microorganisms for musty odor occurrence in the eutrophic Lake Kasumigaura. Hydrobiologia 434, 145150.
  • [42]
    Zaitlin, B., Watson, S.B., Dixon, J., Steel, D. (2003) Actinomycetes in the Elbow River basin, Alberta, Canada. Water Qual. Res. J. Can. 38, 115125.
  • [43]
    Cane, D.E., Watt, R.M. (2003) Expression and mechanistic analysis of a germacradienol synthase from Streptomyces coelicolor implicated in geosmin biosynthesis. Proc. Natl. Acad. Sci. USA 100, 15471551.
  • [44]
    Saadoun, I., El Migdadi, F. (1998) Degradation of geosmin-like compounds by selected species of Gram-positive bacteria. Lett. Appl. Microbiol. 26, 98100.
  • [45]
    Tanaka, A., Oritani, T., Uehara, F., Saito, A., Kishita, H., Niizeki, Y., Yokota, H., Fuchigami, K. (1996) Biodegradation of a musty odour component, 2-methylisoborneol. Water Res. 30, 759761.