We use a multiproxy approach to monitor changes in the vertical profile of the Indonesian Throughflow as well as monsoonal wind and precipitation patterns in the Timor Sea on glacial-interglacial, precessional, and suborbital timescales. We focus on an interval of extreme climate change and sea level variation: marine isotope (MIS) 6 to MIS 5e. Paleoproductivity fluctuations in the Timor Sea follow a precessional beat related to the intensity of the Australian (NW) monsoon. Paired Mg/Ca and δ18O measurements of surface- and thermocline-dwelling planktonic foraminifers (G. ruber and P. obliquiloculata) indicate an increase of >4°C in both surface and thermocline water temperatures during Termination II. Tropical sea surface temperature changed synchronously with ice volume (benthic δ18O) during deglaciation, implying a direct coupling of high- and low-latitude climate via atmospheric and/or upper ocean circulation. Substantial cooling and freshening of thermocline waters occurred toward the end of Termination II and during MIS 5e, indicating a change in the vertical profile of the Indonesian Throughflow from surface- to thermocline-dominated flow.
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 It has been increasingly recognized that tropical oceans, and in particular the Western Pacific Warm Pool (WPWP), play a fundamental role in modulating global climate change on interannual, millennial and orbital timescales [e.g., Godfrey, 1996; Cane and Clement, 1999; Lea et al., 2000; Koutavas et al., 2002; Visser et al., 2003; Medina-Elizalde and Lea, 2005]. The Indonesian Throughflow (ITF) connects the upper water masses of the Pacific and Indian Oceans and substantially influences the salinity and heat exchange between these oceans [Gordon and Fine, 1996]. The annual mean heat transport of the ITF (about 1.15 × 1015 W) represents a heat sink for the Pacific Ocean and a major heat source for the Indian Ocean [Schiller et al., 1998]. Today, the ITF transports an annual average ∼16 Sv (1 Sv = 106 m3 s−1) of warm, low-salinity water from the WPWP and Indonesian-Malaysian archipelago into the eastern Indian Ocean [You and Tomczak, 1993; Gordon and Fine, 1996; Schiller et al., 1998; Gordon et al., 2003] (Figure 1). Warm water transported by the ITF amounts to 5.3 Sv of the total transport of 17.8 Sv in the upper branch of the global thermohaline Conveyor Belt at 20°N in the North Atlantic [Speich et al., 2001]. Thus the ITF forms an important component of the global thermohaline circulation, and exerts a strong influence on regional as well as global climate. For instance, blockage of the ITF would depress the mean thermocline of the tropical Pacific and reduce the sea surface temperature (SST) difference between the WPWP and the eastern tropical Pacific cold tongue [Lee et al., 2002].
 Today, the ITF is dominated by low-salinity, well-ventilated upper thermocline North Pacific water. North Pacific water mainly flows southward through the Sulawesi Sea into the Makassar Strait, and then follows two ways: one branch enters the Indian Ocean via the Lombok Strait (sill depth: 350 m) while the other branch mixes into the Flores Sea. Besides the Lombok Strait, there are two other main exit passages: the Ombai Strait (sill depth: 3250 m) and Timor Passage (sill depth: 1890 m). The mean transports through the three pathways obtained from mooring measurements are respectively 1.7 Sv [Murray and Arief, 1988], 5.0 ± 1 Sv [Molcard et al., 2001] and 7.0 Sv [Cresswell et al., 1993]. The modern ITF transport mainly occurs within the thermocline rather than at the sea surface. It has large seasonal and interannual variability with maximum annual average flow speeds between 50 and 100 m and important net flow down to 400 m water depth in the Makassar and Timor Straits [Gordon et al., 1999; Potemra et al., 2003]. Recent modeling work suggested that changes in the vertical profile of the ITF are more important to alter the stratification and surface heat fluxes of the Indian Ocean than mean transport flux [Song and Gordon, 2004] and that during glacials, thermocline flow was significantly reduced, whereas surface flow remained virtually unchanged [Kuhnt et al., 2004; Žuvela, 2005].
 The hydrography of the WPWP region is strongly influenced by the semiannually reversed wind regime of the Asian-Australian monsoon and associated seasonal precipitation patterns. The Asian-Australian monsoon is a huge thermal circulation system driven by seasonal surface temperature differences between broadly central Asia and Australia [Tapper, 2002] (Figure 2). The east Asian boreal winter (northeast) monsoon, which is in phase with the Australian austral summer (northwest) monsoon, is characterized by cold, dry air flowing southward across the South China Sea. In contrast, a moist northwest monsoonal flow becomes established over northern Australia during austral summer. The winds are relatively light in the monsoon transition periods of March–April and October–November, as the Intertropical Convergence Zone (ITCZ) moves alternatively north and south across the region [Tapper, 2002]. The ITCZ shift has substantial impact on the seasonal precipitation pattern over Australasia. While precipitation focuses in the north (South China Sea) and east (west Pacific) during boreal summer, a large part of the ITF area, including the eastern part of the Timor Sea and Timor Strait, receives high precipitation during the austral summer monsoonal season (December to March) [Tapper, 2002]. However, during glacial times, the southward shift of the ITCZ in boreal winter may have been considerably restricted, and/or the Australian summer monsoon may have been drier because of cooler Indian Ocean water masses (Figure 2).
 The main objectives of this work are to track changes in the vertical profile of the ITF outflow in the Timor Sea during a period of extreme climate change and sea level variation (Termination II) and to determine leads and lags in climatic, hydrographic and paleoproductivity proxies. We use a multiproxy approach to reconstruct temperature and salinity of surface and thermocline waters, and to investigate changes in the productivity driven particle flux to the deep ocean. Our work is based on high-resolution sediment samples from IMAGES Core MD01-2378, recovered during the WEPAMA cruise in 2001, and complements an earlier investigation of the 40.73 m core in a time resolution of ∼1–2 kyr [Holbourn et al., 2005]. This previous study indicated that productivity fluctuations in the Timor Sea over the last 460 kyr were strongly influenced by monsoonal wind patterns offshore NW Australia (23 and 19 kyr variability), but were also modulated by sea-level-related variations in the intensity of the ITF (100 kyr variability) over glacial-interglacial cycles.
2. Material and Methods
 IMAGES Site MD01-2378 (13°4.95′S, 121°47.27′E; water depth: 1783 m) is located at the southern margin of the main outflow of the ITF in the Timor Sea (Figure 1). The sediment consists of undisturbed, homogenous, carbonate-rich nannoplankton ooze with abundant planktonic foraminifers and relatively rare benthic foraminifers. An initial age model was generated for the complete core, based on 21 AMS 14C dates and 38 benthic oxygen isotope events [Holbourn et al., 2005]. For the present study, sediment samples (∼30–40 cc from 1 cm thick sediment slices) were taken at 1 cm distance in the interval 1310 to 1471 cm, corresponding to the transition from MIS 5e to MIS 6 according to the original age model. Samples were dried in an oven below 40°C, disaggregated by soaking in water, then wet sieved over a 63 μm screen. Residues were dried on a sheet of filter paper below 40°C, then sieved into 63–150 μm, 150–250 μm, 250–630 μm fractions.
2.1. Planktonic and Benthic Foraminiferal Census Counts
 Planktonic foraminifers were picked, identified and counted from an aliquot containing about 250 specimens in the size fraction >150 μm. The taxonomy follows Bé  and Saito et al. . An average of 100–150 benthic foraminifers were picked, identified and counted in the size fraction >250 μm from every second sample. We used correspondence analysis to identify changes in faunal distribution following the approach in the work of Holbourn et al. . The initial counts of Holbourn et al.  were included in the analysis. Census counts (normalized to individuals/gram sediment) of 84 species of benthic foraminifers in 81 samples were analyzed with CANOCO version 4.5 (output details given by Ter Braak ). Since only sample scores on the first axis were used, no detrending was necessary. Rare species were downweighted during analysis. Resulting Factor I scores differ from Holbourn et al.  in absolute values because of the different software used for analyses and the shorter stratigraphic interval analyzed. However, the major trends are preserved.
2.2. Stable Isotopes
 For the analysis of stable isotopes, we selected from all samples 20 tests of the surface water dweller Globigerinoides ruber (white), 8∼10 tests of the subsurface dweller Pulleniatina obliquiloculata from the size fraction of 250∼315 μm and 3 to 6 tests (>250 μm) of the epifaunal benthic foraminifer Planulina wuellerstorfi (except in a few samples, where P. wuellerstorfi was absent and Cibicidoides mundulus was analyzed). In a few samples, where benthic foraminiferal density was low, a smaller number (1–2) of specimens was analyzed. The initial isotopic data of Holbourn et al.  were included. 16 replicate samples of G. ruber and P. obliquiloculata indicate that the mean reproducibility (1σ) is ±0.12‰ for δ18O and ±0.13‰ for δ13C. The mean reproducibility of 17 paired samples of P. wuellerstorfi is better than ±0.08‰ for δ18O and δ13C. Paired measurements on P. wuellerstorfi and C. mundulus indicate no significant offset between these two species.
 All tests were checked for cement encrustations and infillings before being broken into large fragments, then cleaned in alcohol in an ultrasonic bath and dried at 40°C. Stable carbon and oxygen isotope measurements were made with the Finnigan MAT 251 mass spectrometer at the Leibniz Laboratory, Kiel University. The instrument is coupled online to a Carbo-Kiel Device (Type I) for automated CO2 preparation from carbonate samples for isotopic analysis. Samples were reacted by individual acid addition. The mean external error and reproducibility (1σ) of carbonate standards is better than ±0.07‰ and ±0.05‰ for δ18O and δ13C, respectively. Results were calibrated using the National Institute of Standards and Technology (Gaithersburg, Maryland) carbonate isotope standard NBS 20 and in addition NBS 19 and 18, and are reported on the Peedee belemnite (PDB) scale.
2.3. Mg/Ca Paleothermometry
 Mg/Ca ratios were measured on ∼30 tests of G. ruber and P. obliquiloculata, from the same size fraction used for stable isotope analysis. To assess overall reproducibility, we duplicated measurements of 24 randomly selected samples. Foraminiferal tests, weighing about 0.2–0.8 mg per sample, were gently crushed under the microscope, and cleaned of contaminant phases using the standard foraminifera cleaning procedure with reductive step [Martin and Lea, 2002]. Samples were analyzed on an ICP-OES (Spectro Ciros SOP) with cooled cyclonic spray chamber and microconcentric nebulization (200 μL min−1) at the Institute of Geosciences, Kiel University. Intensity ratio calibration followed the method of de Villiers et al. . Internal analytical precision from replicate measurements is better than 0.1–0.2% (relative standard deviation), which corresponds to ±0.02°C. Replicate analyses showed a standard deviation of 0.14 mmol/mol, equivalent to ±0.7°C. Consistency of results was checked by analyzing sets of standards obtained from M. Greaves, University of Cambridge. The validity of Mg/Ca ratio was checked by evaluating the consistency of Ca concentration before and after cleaning. Samples with a reduction in Ca concentration of more than 20% were rejected. Fe/Ca, Al/Ca and Mn/Ca ratios were additionally used to monitor cleaning efficacy, and samples with a significant correlation between Fe/Ca, Al/Ca, Mn/Ca and Mg/Ca values were excluded, following the method used by Schmidt et al. . As a result, 13 samples of P. obliquiloculata and 19 samples of G. ruber were discarded.
 SST was calculated from the Mg/Ca ratios of G. ruber, using the equation developed by Anand et al. . The equation, Mg/Ca = 0.38 (±0.02) exp 0.090 (±0.003) T, which yields an accuracy of ±1.2°C in estimating calcification temperature, is based on the calibration of Mg/Ca in 12 species from sediment traps in the Sargasso Sea to δ18O-derived temperatures. In our core, this equation yielded identical SSTs compared to the species-specific equations for the tropical oceans employed by Hastings et al.  and Dekens et al. . Thermocline water temperature derived from the subsurface dweller P. obliquiloculata Mg/Ca was based on a species-specific calibrated equation assuming an exponential constant of 0.09 [Anand et al., 2003]. The equation is expressed as Mg/Ca = 0.328 (±0.007) exp 0.090 (±0.003)T. Termination II profiles of stable isotopes, Mg/Ca ratios and estimated temperatures at MD01-2378 are archived at WDC-MARE (http://www.pangaea.de, doi:10.1594/PANGAEA.472294).
 To assess validity of these equations in the region, foraminifera were picked from 12 multicore core top samples from six stations along a depth transect between 560 m and 2320 m including MD01-2378. These samples yielded average Mg/Ca values of 4.81 mmol/mol for G. ruber (n = 12, standard deviation: 0.25) and 2.38 mmol/mol for P. obliquiloculata (n = 12, standard deviation: 0.26). These values correspond to temperatures of 28.2° for G. ruber and 22.0° for P. obliquiloculata, which fall into the range of average summer SST (28°–29°C) and summer upper thermocline temperatures at 75–125 m water depth (22°–23°C) (World Ocean Atlas 2001 seasonal temperature data [Conkright et al., 2002]). These data are archived at WDC-MARE (http://www.pangaea.de, doi:10.1594/PANGAEA.472296).
2.4. Salinity Reconstructions
 We calculated surface and thermocline water oxygen isotope composition (δ18Ow) from paired Mg/Ca and δ18O measurements of G. ruber and P. obliquiloculata. We used the paleotemperature equation of Bemis et al.  and Thunell et al. . This equation is expressed as δ18Ow(VSMOW) = 0.27 + (T(°C) − 16.5 + 4.8 × δ18Ocalcite(VPDB))/4.8. Using our core top data, a regional surface δ18Ow value of −0.1‰ (±0.3) versus SMOW and an upper thermocline δ18Ow of −0.3‰ (±0.2) versus SMOW are predicted. These values are intermediate between the measured δ18Ow values of −0.5‰ in the WPWP water mass and 0.6‰ in the upper 300 m of the eastern Indian Ocean (Global Seawater Oxygen-18 Database (G. A.Schmidt et al., Goddard Institute for Space Studies, NASA, New York, 1999, available at http://data.giss.nasa.gov/o18data/, hereinafter referred to as Schmidt et al., Global Seawater Oxygen-18 Database, 1999)). Since δ18Ow is corrected for the effect of temperature on the oxygen isotope fractionation between the foraminiferal test and water, δ18Ow is only influenced by the change in δ18O related to continental ice volume and local δ18O variations related to the salinity of surface and thermocline water masses. As the δ18Ow curves (bottom, thermocline and surface waters) carry the same ice volume signal, deviations mainly reflect changes in salinity.
2.5. Depth of Thermocline (DOT) Reconstructions
 Planktonic foraminiferal census data were used to estimate DOT, based on the transfer function developed by Andreasen and Ravelo  for the tropical Pacific Ocean, where the 18°C isothermal is arbitrarily defined as the DOT. Today, the position of the 18°C isothermal in the Timor Sea is ∼170 m, corresponding to the depth range at which water temperature changes most rapidly (Figure 3). The equation has a standard error of ±22 m, and an additional ±5-m error is introduced by low species counts in the core top database. The DOT was also estimated from temperature differences between surface- and thermocline-dwelling species [Anand et al., 2003]. P. obliquiloculata is considered to live below the mixed surface layer in thermocline waters, whereas G. ruber generally maintains a near-surface dwelling habitat [Hemleben et al., 1989; Ravelo and Fairbanks, 1992]. Reported calcification depths for these two species are on the order of 100 m and 0–50 m, respectively [Ravelo et al., 1990; Anand et al., 2003], which is in agreement with measured Mg/Ca temperatures in core top samples (Figure 3). Thus the thermal gradient (ΔT(G. ruber-P. obliquiloculata)) increases, when DOT shallows, and decreases, when DOT deepens.
3.1. Age Model
 The temporal resolution (∼1–2 kyr) of the original age model for Core MD01-2378 [Holbourn et al., 2005] is too low to be applied to Termination II. Thus we developed a new age model for MIS 6–5e, which follows the specific benthic oxygen isotope stratigraphy for MIS 5e at MD95-2042 (37°48′N, 10°10′W; water depth: 3146 m) in the work of Shackleton et al. [2002, 2003]. Our benthic δ18O curve closely resembles the MD95-2042 curve for the interval MIS 6–5e, showing a distinct plateau between 1326 and 1400 cm. This plateau was assigned an age of 116–128 ka by Shackleton et al. [2002, 2003] using radiometric dates of marine coral terraces corresponding to the MIS 5e sea level highstand. While the end (116 ka) of the MIS 5e plateau is quite distinct at 1326 cm in our δ18O curve, the onset of the plateau (128 ka) is somewhat ambiguous (Figure 4). Low δ18O values of 2.5‰ already occur at 1400–1385 cm, but consistent δ18O values around 2.4‰ are only reached at 1383 cm. We selected this latter point as the onset of the MIS 5e plateau, as the thermocline species P.obliquiloculata also exhibits a marked decrease in δ18O of more than 1‰ between 1400 cm and 1385 cm.
 The midpoint of the MIS 6–5e transition was correlated with the sea level stillstand of −60 to −80 m, dated at 132 ± 2 ka in the “Alladin's Cave” record [Esat et al., 1999; Shackleton et al., 2003]. We correlate this sea level stillstand with the small δ18O plateau between 1406 and 1417 cm, corresponding to 12 data points, with an average value of 3.24‰ and ∼1.4‰ standard deviation. The midpoint of the plateau at 1410 cm was correlated to the Alladin's Cave event. Event 6.1 at 1431 cm in our core, was determined at 135 ka following Martinson et al. , as no revised age was proposed by Shackleton et al. [2002, 2003].
 To construct our age model, a smooth curve was fitted using locally weighted (10% of data) least squares (Stineman function) to tie points at 135 ka (1431 cm), 132 ka (1410 cm), 128 ka (1383 cm) and 116 ka (1326 cm), then the interpolated curve was sampled. For the few samples above 1326 cm we assumed that sedimentation rate remained consistent. For the interval below 1431 cm, we used the well-defined MIS 6.5 as additional tie point [Holbourn et al., 2005]. The interval between 1471 and 1310 cm then covers 140.6∼112 ka and the average temporal sampling resolution is about 200 yr. Sedimentation rates vary between 4 and 4.5 cm/kyr during MIS 5e and between 6 and 7.5 cm/kyr during MIS 6 (Figure 4), which appears much lower than a rate of 19 cm/kyr during the last 30 kyr [Holbourn et al., 2005]. However, the high sedimentation rate in the upper part of the core is artificial because of the Calypso coring technique.
3.2. Surface and Subsurface Water Temperature Reconstructions Based on Mg/Ca
 Several lines of evidence indicate that calcite is well preserved in our samples and that Mg/Ca ratios are not significantly biased by partial dissolution. First, Site MD01-2378 (1783 m water depth) is located ∼2000 m above the present lysocline. Secondly, planktonic foraminiferal fragmentation (calculated from the relation: (fragments/8)/(fragments/8 + whole tests) × 100%), which provides a reliable dissolution index [Le and Shackleton, 1992; Conan et al., 2002], is low with an average of 1.9%, and highest value of only 3.9% at 115.1 ka (Figure 5a). In addition, the weight of individual tests remains consistent in both G. ruber (average 0.0107 ± 0.0009 mg per individual) and P. obliquiloculata (0.0190 ± 0.0025 mg), and no significant correlation is apparent between Mg/Ca values and shell weights in glacial (MIS 6) and interglacial (MIS 5e) periods (Figure 5b). Correlation coefficients (R2) are 0.097 and 0.069 for G. ruber, and 0.168 and 0.065 for P. obliquiloculata during MIS 5e and 6, respectively.
3.2.2. Mg/Ca in G. ruber and P. obliquiloculata
 Mg/Ca ratios in G. ruber range from 3.34 to 5.56 mmol/mol and in P. obliquiloculata from 1.82 to 3.26 mmol/mol (Figure 5a). These ratios are within the ranges of average intra-annual variations in sediment traps observed by Anand et al. . The highest values occur in MIS 5e, at 126 and 128 ka. The lowest value for G. ruber is at 139.1 ka and for P. obliquiloculata at 140.2 ka. Two striking features of the G. ruber curve are the plateaux in MIS 6 (3.54 ± 0.10 mmol/mol between 140.6 and 135.4 ka) and in MIS 5e (5.19 ± 0.14 mmol/mol during 129.3∼118.9 ka interval). In contrast, the Mg/Ca ratios of P. obliquiloculata increase sharply until 128 ka, then decrease gradually (Figure 5a).
3.2.3. Temperature Reconstructions
Figure 6 shows estimates of calcification temperatures for G. ruber and P. obliquiloculata based on Mg/Ca ratios. G. ruber has been suggested as the most accurate recorder of SST by Dekens et al. . G. ruber shows highest SST (29.8°C) at 126 ka, within the “plateau” of MIS 5e, and lowest SST (24.2°C) at 139.1 ka. The average estimated glacial SST between 140.6 and 135.4 ka is 24.8°C ± 0.3°C, and the average SST within the MIS 5e “plateau” (128–116 ka) is 28.8 ± 0.4°C (Figure 6). The mean temperature difference and the difference between maximum and minimum in these two intervals are 4.2°C and 5.6°C, respectively. These glacial-interglacial SST differences are comparable to the values of 4.1 ± 0.6°C and 5.3 ± 0.7°C estimated by Visser et al.  for Site MD98-2162 in the Makassar Strait (4°41.33′S, 117°54.17′E; 1855 m water depth; Figure 1).
P. obliquiloculata Mg/Ca-based thermocline water temperatures (ranging from 19°C to 25.5°C) are on average lower by ∼4°C than G. ruber surface temperatures. Calcification temperature estimates for P. obliquiloculata increase from ∼19° at 140.6 ka to ∼25° at 128 ka, then decrease to ∼19.5°C at 113 ka (Figure 6). It is also striking that both G. ruber and P. obliquiloculata Mg/Ca-based temperatures show a sudden cooling of ∼1°C at ∼129.5 ka, just before temperatures reach their highest values at the end of Termination II.
3.3. Surface and Subsurface Salinity Changes (δ18Ow)
 Sea surface and upper thermocline δ18Ow remain high (around 1‰ versus SMOW) until ∼130 ka, whereas the ice-volume-related component of δ18Ow started to decrease at ∼135 ka (Figure 7). This difference to the global trend probably stems from the high salinity of surface and upper thermocline waters in the early part of Termination II, related to low regional precipitation and high evaporation. A steep decrease in thermocline δ18Ow begins at ∼130 ka and is maintained throughout the MIS5e plateau indicating freshening of thermocline waters. The difference in thermocline δ18Ow between the early part of Termination II and the late part of MIS 5e exceeds 1.5‰, which is significantly more than the ice volume effect of ∼1‰ [Waelbroeck et al., 2002]. Surface water δ18Ow during Termination II and early MIS 5e is within the range of the ice volume effect, but shows a phase lag of approximately 3 kyr, which probably relates to delayed freshening.
3.4. Depth of Thermocline (DOT)
 DOT estimates for Termination II in Core MD 01-2378 are shown in Figure 8. The DOT curve exhibits a sinuoidal pattern, with a flat valley between 135∼128 ka. The average DOT is 162 ± 16 m during MIS 5e (128∼112 ka), 159 ± 12 m during MIS 6 (140.6∼135 ka) and ∼175 m during Termination II. The present-day DOT position, which is constrained by the 18°C isotherm [Andreasen and Ravelo, 1997], is at ∼170 m in our core [Bassinot et al., 2002; Kuhnt et al., 2006]. Therefore DOT estimates are close to the modern 18°C isotherm depth (∼170 m). Variations in ΔT are consistent with fauna-based DOT estimates, except for the latest part of MIS 5e, when both estimates exhibit high-frequency variations.
3.5. Paleoproductivity Proxies
 Accumulation rates of benthic foraminifers show a linear correlation to food resources and thus to digestible export flux at the seafloor [Herguera and Berger, 1991]. However, they may be influenced by high-frequency fluctuations in sedimentation rates related to sediment focusing, winnowing or current-related rapid sedimentation events. In Core MD01-2378, benthic foraminiferal accumulation rates decrease from ∼50 to ∼20 specimens/cm2/kyr during the transition from MIS 6 to 5e (135–131 ka), remained at ∼20 until 122 ka before steadily increasing from ∼20 (at 122 ka) to ∼60 specimens/cm2/kyr (at 113 ka) (Figure 9). The productivity index based on F1 values derived from correspondence analysis takes into account the distribution of species within assemblages, and is less sensitive to changes in sedimentation rate. This index is generally strongly correlated to the export flux at the seafloor [Kuhnt et al., 1999; Wollenburg and Kuhnt, 2000].
 The difference in δ13C between planktonic and benthic foraminifers (Δδ13C(PF-BF)) has also been used for qualitative estimates of export productivity in tropical and subtropical oceans [Sarnthein and Winn, 1990; Jian et al., 2001]. However, owing to the complexity of factors influencing δ13C, this index needs to be evaluated in combination with other export flux proxies. In Core MD01-2378, the Δδ13C(PF-BF) curve bears similarity to the productivity index based on benthic foraminiferal census counts (Figure 9), and thus is probably related to productivity changes in near-surface waters.
4.1. Stepwise Deglaciation
 The small plateaux in the benthic δ18O record of Core MD01-2378 (Figure 6), centered at approximately 132 ka (Alladin's Cave event [Shackleton et al., 2003]) and 130 ka (“Younger Dryas II” [Cortese and Abelmann, 2002]), indicate a stepwise deglaciation during Termination II. Each plateau ends with a short increase in δ18O values, suggesting transient cooling of deep-intermediate water or ice expansion. Whereas the “Alladin's Cave event” is not reflected in tropical SST in Core MD01-2378, our planktonic data suggest that surface cooling also occurred during the Younger Dryas II event at 129.5 ka (Figure 6). The sudden decrease in SST and thermocline temperatures by ∼1°C at the end of Termination II (129.5 ka) is reminiscent of the Younger Dryas cooling event during Termination I. The Younger Dryas II event was previously recognized in ODP Site 1089 in the South Atlantic [Cortese and Abelmann, 2002], and may represent a global event related to perturbations of the thermohaline circulation related to meltwater pulses, as was proposed for the Younger Dryas event.
 It is also striking that the MIS 5e plateau is marked by increases in benthic δ18O at 126.2, 124.9, 123 and 118.5 ka (Figure 6). The most striking increase at 118.5 ka seems to correspond to the cooling event in the Southern Ocean at 118.5 ka [Cortese and Abelmann, 2002], in the north Greenland ice core at 119 ka [North Greenland Ice Core Project Members, 2004], and to the global sea level drop at 118 ka [Lambeck and Chappell, 2001, Figure 3] and late Eemian aridity pulse at 118 ka [Sirocko et al., 2005]. However, it is difficult to ascertain whether the δ18O increase at 118.5 ka in Core MD01-2378 refers indeed to a global event, since the other records considered above are based on different age models.
4.2. Sea Level and Monsoonal Controls on Timor Sea Hydrography
4.2.1. Glacial-Interglacial Change in ITF Vertical Profile
 Seawater oxygen isotope reconstructions based on paired Mg/Ca and δ18O measurements of surface- and thermocline-dwelling planktonic foraminifers indicate high salinity in surface and thermocline waters during MIS 6 and the early part of Termination II (Figure 7), pointing to the strong influence of Indian Ocean intermediate water in the Timor Sea. A decrease in surface water δ18O, started around 132 ka (the Alladin's Cave event or midpoint of the MIS 6 to 5e transition), implying increased flow of warm, fresh surface water from an expanding WPWP. The freshening of thermocline water, coinciding with the Younger Dryas II event (129.5 ka) started later, indicating delayed strengthening of thermocline flow. Interestingly at that time, the rising sea level must have reached the threshold water depth of −50 to −60 m, allowing a marine connection to be established between the South China Sea and Java Sea. Such a connection would have promoted the establishment of a freshwater pool at the southern end of the Makassar Strait, which inhibited surface outflow and promoted thermocline outflow from the Makassar Strait, in a similar fashion to the present day [Gordon et al., 2003].
 Lowered sea level and restricted passages remained a major control on ITF vertical structure during MIS 6 and most of Termination II. Modeling experiments also suggest that during glacial sea level lowstands ITF intensity decreased and the ITF vertical structure changed toward increased surface flow relative to thermocline flow [Žuvela, 2005]. Contributing mechanisms would be (1) strengthened NE Asian winter monsoon increasing surface flow in the Makassar Strait (the main passage of the ITF) and (2) unrestricted surface outflow from the Makassar Strait during NE Asian winter monsoon, since fresh water entering from the Java Sea, which today obstructs surface circulation at the southern end of the Makassar Strait [Gordon et al., 2003], was suppressed, when the Sunda Shelf was exposed during sea level lowstands.
 Substantial deepening of the thermocline occurred during Termination II in the Timor Sea (Figure 8). However, it is somewhat surprising that the DOT reached its deepest position just before the beginning of the MIS 5e plateau, and was comparatively shallow during both MIS 6 and MIS 5e (Figure 8). Deepening of the thermocline in the early part of Termination II probably stemmed from increased surface flow, before a marine connection existed between the South China Sea and Java Sea. A reduced glacial ITF would explain thermocline shallowing during MIS 6, but cannot account for the shallowing during MIS 5e. Modeling experiments and oceanographic measurements indicate that today the ITF transport is stronger within the thermocline than at the surface [Gordon et al., 2003; Song and Gordon, 2004]. An increase in cool, fresh thermocline flow, resulting in a vertical profile similar to that of the modern ITF, would explain shoaling of the thermocline in the Timor Sea in the latest part of Termination II and MIS 5e.
4.2.2. Monsoonal Influence on Paleoproductivity
 Modern seasonal productivity patterns along the NW Australian margin are strongly influenced by intrusions of cool, nitrate-rich slope waters below the warm, low-salinity surface layer during austral summer, when the surface ITF is weak and the Leeuwin current is relaxed, resulting in a comparatively shallow pycnocline. These intrusions result in intense deep chlorophyll maxima since the solar radiation is strong enough to sufficiently illuminate subpycnocline water for algal growth [Longhurst, 1998]. Additionally, mixing of the surface layer by cyclones, which occurs frequently offshore NW Australia during the austral summer monsoon season [Tapper, 2002], contributes to increased productivity.
 The strength of the Australian (NW) monsoon thus influences the upper water column in the Timor Sea by intensifying vertical mixing of the surface layer and promoting the reversing of currents in December–February. The effect of the Australian monsoon was detected in the productivity record of the Timor Sea, which revealed a marked precessional response over the last 460 kyr [Holbourn et al., 2005]. The high-resolution benthic foraminiferal paleoproductivity proxy record over Termination II also follows closely summer insolation variations over NW Australia. A strong decrease in marine productivity is evident at ∼138 ka with a minimum at the onset of MIS 5e (128 ka), which is followed by a slight recovery during MIS 5e (Figure 9). Paleoproductivity fluctuations in the Timor Sea appear linked to the waxing and waning of monsoonal winds and associated changes in vertical mixing and currents. An additional effect of strengthened Australian monsoon may be the blockage of warm surface outflow from the Timor Strait, which would lead to thermocline shoaling in the Timor Sea and promote local upwelling of nutrient-rich Indian Ocean intermediate water.
4.3. Phasing of Ice Volume Change and Tropical SST: High- Versus Low-Latitude Climate Change
 The MD01-2378 SST record, based on Mg/Ca of G.ruber, reveals a rise of ∼4°C in the Timor Sea during Termination II, which has similar magnitude as the increase detected in Core MD98-2162 from the Makassar Strait [Visser et al., 2003]. In Core MD01-2378, the temperature rise is coeval with the first decline in benthic δ18O at ∼135 ka marking the onset of Termination II, and a “plateau” in SST (∼29°–30°C) is sustained between 129 and 118 ka (Figure 6). However, at these two locations, there is a fundamental difference in the phasing between SST and planktonic δ18O (Figure 10). In the Timor Sea, SSTs are in phase with both planktonic and benthic δ18O until the beginning of MIS 5e. In contrast, SSTs lead planktonic δ18O, interpreted as global ice volume, by 2∼3 kyr in the Makassar Strait [Visser et al., 2003]. However, since no benthic δ18O data are available for the Makassar Strait, the interpretation of the δ18O record remains ambiguous. A lead of tropical SST to ice volume was also reported from the equatorial Pacific by Lea et al. , spurring an intense debate about the role of the tropics in past global climate change. Pacific tropical SST records lead continental ice volume by ∼3 kyr [e.g., Lea et al., 2000; Koutavas et al., 2002; Visser et al., 2003; Medina-Elizalde and Lea, 2005], but coincide with changes in Antarctic air temperature [Lea et al., 2000]. In contrast, Atlantic records suggested that tropical SST changed synchronously with Northern Hemisphere high-latitude climate and ice sheet response [Lea et al., 2003].
 These discrepancies may to some extent be explained by local variability in tropical climate, mainly stemming from monsoonal systems and seasonal migration of the ITCZ [Lea et al., 2003], seasonal proxy bias during cool glacial periods or proxy noise masking a small early rise of sea level [Ashkenazy and Tziperman, 2006]. A lag of planktonic δ18O to both SST and benthic δ18O was recently reported from the northern South China Sea where surface water hydrography is strongly affected by the east Asian summer monsoon [Oppo and Sun, 2005]. These authors suggested a strong influence of summer monsoon intensity on sea surface salinity and surface water δ18O by large-scale redistribution of δ18O depleted rainfall from land to sea when the monsoon weakens. The Makassar Strait record is likely influenced by changes in local monsoonal precipitation, since surface salinity at this location is strongly influenced by local rainfall and continental runoff from Borneo. A lag of surface δ18Ow to SST at glacial terminations could be related to decreasing monsoonal rainfall over Borneo associated with a northward shift of the ITCZ during the boreal summer with strong repercussion on surface salinity and δ18Ow in the early phase of the glacial termination. In Core MD01-2378, the synchroneity of SST and benthic δ18O supports that 16O-enriched water from melting ice sheets reached the Timor Sea when warming started in the tropics, indicating an almost instantaneous heat transfer between high and low latitudes. Synchronous warming of SE Asian tropical-subtropical seas and melting of continental ice sheets is also reported from several sites in the South China Sea and support the notion of a strong atmospheric connection between high northern latitudes and SE Asia [Kienast et al., 2001; Oppo and Sun, 2005]. A high-latitude influence on tropical SST was also detected in long-term Pleistocene records from the eastern equatorial Pacific, which revealed a strong obliquity component in tropical SST [Liu and Herbert, 2004]. According to these authors, tropical SST lead ice volume at the obliquity band, but are in phase with high-latitude insolation, indicating a direct coupling between low and high latitudes via the atmosphere or/and upper ocean.
 Sediment samples taken at 1 cm interval in Core MD01-2378, located at the northwestern margin of the Scott Plateau in the Timor Sea, were analyzed to reconstruct temperature and salinity in surface and thermocline waters and paleoproductivity fluctuations during Termination II. Our study reveals changes in the vertical profile of the ITF as well as monsoonal wind and precipitation patterns in the Timor Sea on glacial-interglacial, precessional and suborbital timescales.
 Paleoproductivity fluctuations in the Timor Sea follow a precessional beat related to the intensity of the Australian (NW) Monsoon with maxima at 138 ka (MIS 6) and 116 ka (end of MIS 5e). Paired Mg/Ca and δ18O measurements of surface- and thermocline-dwelling planktonic foraminifers (G. ruber and P. obliquiloculata) indicate an overall increase of >4°C in both SST and thermocline water temperature over Termination II. Surface flow increased at the onset of Termination II, whereas thermocline flow was still restricted, and thermocline waters in the Timor Sea remained strongly influenced by relatively saline Indian Ocean intermediate water. Lowered sea level and restricted passages exerted a major control on ITF vertical structure during the onset of Termination II.
 Substantial cooling and freshening of thermocline waters during MIS 5e indicate a change in the vertical profile of the Indonesian Throughflow from surface to thermocline-dominated flow, possibly related to restricted surface flow through the southern exit of the Makassar Strait. In contrast, SST exhibits a distinct plateau during most of the MIS 5e sea level highstand indicating the persisting influence of a stable WPWP. Tropical SST changed synchronously with ice volume (benthic δ18O) during deglaciation, implying a direct coupling of high- and low-latitude climate via atmospheric and/or upper ocean circulation.
 We thank Yair Rosenthal, Arnold Gordon, and Lowell Stott for helpful discussions and Robert Thunell for providing Mg/Ca and δ18O data from Visser et al. . We are grateful to Delia Oppo and an anonymous reviewer for their insightful comments and helpful suggestions; to Yvon Balut and the R/V “Marion Dufresne” crew for all their efforts; to Mara Weinelt for constructive suggestions; to Nadine Gehre, Karin Kissling, and Brigitte Salomon for technical help; and to H. H. Cordt, H. Gier, and H. Heckt for carefully processing the isotope analysis. This work was funded by DFG grant KU649/14-2.