We used leaf gas exchange, sap flow, and eddy covariance measurements to investigate whether high temperature substantially limits CO2 uptake at the LBA-ECO (Large-scale Biosphere-Atmosphere) km-83 tropical forest site in Brazil. Leaf-level temperature-photosynthesis curves, and comparisons of whole-canopy net ecosystem CO2 exchange (NEE) with air temperature, showed that CO2 uptake declined sharply during warm periods. Observations of ambient leaf microclimate showed that leaves oscillate between two states: a cool, dimly lit stage and a hot, brightly illuminated stage where leaf temperatures are often greater than 35°C. The leaf-level rates of photosynthesis decreased when shaded leaves (∼ambient air temperature and < 500 μmol m−2 s−1) were transferred into a prewarmed, brightly illuminated chamber (35° to 38°C and 1000 μmol m−2 s−1), coincident with increased leaf temperature, increased evaporative demand, and stomatal closure. The rates of whole-canopy CO2 uptake calculated at 5-min intervals increased initially at the onset of sunny periods that followed extended cloudy periods, but then decreased as the sunlight continued, leaf temperature and evaporative demand increased, and canopy conductance decreased. The forest at km-83 appears to be close to a high temperature threshold, above which CO2 uptake drops sharply. This sensitivity results in part from the covariance between leaf temperature and leaf illumination; the brightly illuminated leaves that contribute disproportionately to canopy photosynthesis are warmed to the point that leaf gas exchange is curtailed.
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 Researchers have hypothesized that increasing temperatures will have a negative impact on tropical forest production [Clark, 2004], resulting in a positive feedback that amplifies global climate change [Cox et al., 2000]. High temperatures reduce CO2 uptake by C3 plants through reversible, short-term increases in photorespiration, respiration and stomatal closure, and, in extreme cases, irreversible damage to biochemical machinery [Berry and Björkman, 1980]. Increases in temperature that increase photorespiration, total ecosystem respiration, or the incidence of stomatal closure would be expected to decrease tropical forest primary production. The Amazon Forest contains 93 (±23) PgC (1015 g) of live biomass aboveground, and tropical forest accounts for at least 30% of global terrestrial primary production [Malhi et al., 2006; Field et al., 1998], underscoring the need to understand the sign and magnitude of this climate change feedback.
 Field observations have drawn attention to the possibility that tropical forest production is highly sensitive to temperature [Clark et al., 2003; Feeley et al., 2007]. Studies of leaf gas exchange using chambers have found that photosynthesis by tropical leaves declines above 26 to 34°C [Koch et al., 1994; Ishida et al., 1999; Keller and Lerdau, 1999; Lerdau and Throop, 1999; Graham et al., 2003; Tribuzy, 2005]. Sunlit canopy leaves in tropical forests may be several °C above air temperature [Ishida et al., 1999; Leakey et al., 2003; Tribuzy, 2005], implying that photosynthesis is sometimes constrained by high temperatures. Field measurements of whole-ecosystem CO2 exchange in tropical forests made using the eddy covariance technique indicate that CO2 uptake decreases markedly during warmer than average periods [Loescher et al., 2003; Goulden et al., 2004]. Field measurements using diameter tapes in tropical forest show a strong negative correlation between interannual temperature variability and wood increment [Clark et al., 2003]. Taken together, these observations support the idea that tropical forests currently operate near a high temperature threshold, and that future increases in temperature will have a negative impact on primary production. However, field data are still inadequate to reach a strong conclusion and several uncertainties remain [Clark, 2004].
 One of the major questions involves the strength of the warming effects described by Loescher et al.  and Goulden et al. . Goulden et al. reported that CO2 uptake by an Amazonian forest decreased by 12 μmol m−2 s−1 during periods that were only 3°C warmer than average. The strength of this sensitivity is unexpected, since observations of gas exchange in temperate climates show that photosynthesis is generally well adapted and acclimated to average temperature [Berry and Björkman, 1980], and that the rates of photosynthesis are largely insensitive to typical diel and day-to-day temperature variation. Moreover, the maximum growing-season air temperatures imposed on many tropical forests are no higher than the maximum growing-season air temperatures imposed on many temperate forests [Breckle, 2002]. Loescher et al.'s , Goulden et al.'s , and Clark et al.'s  findings imply that tropical forest CO2 exchange is strongly sensitive to warming. Several studies show that tropical forest leaf photosynthesis decreases above 26 to 34°C [Koch et al., 1994; Ishida et al., 1999; Keller and Lerdau, 1999; Lerdau and Throop, 1999; Graham et al., 2003; Tribuzy, 2005]. But it is unclear whether the leaf- and canopy-level observations are quantitatively compatible. More work is needed to mechanistically understand why tropical forest gas exchange declines markedly during warm periods.
 The goal of this paper is to relate whole-forest observations of tropical forest gas exchange to measurements of leaf and branch physiology and microclimate. We worked at the km-83 site in the Tapajos National Forest, Para, Brazil, an evergreen tropical forest that was a focus of the Large Scale Biosphere-Atmosphere Experiment in Amazonia (LBA-ECO [Keller et al., 2004]). We compare the effects of temperature and light on CO2 exchange and stomatal conductance measured using eddy covariance, sap flow and leaf-level gas exchange (Table 1).
Table 1. Summary of Measured and Derived Variables
Photosynthetically active Photon Flux Density (μmol m−2 s−1)
GaAsP sensors affixed to leaves
Photosynthetically active Photon Flux Density (μmol m−2s−1)
PPFD sensor at 64 m
Net radiation (W m−2)
Net radiometer at 64 m
Leaf temperature (°C)
Thermocouples affixed to leaves
Air temperature in a gap (°C)
Thermistor with radiation shield
Air temperature at 40 m (°C)
Air temperature at 64 m (°C)
Aerodynamic canopy temperature (°C)
Inverted Penman-Monteith equation
Leaf transpiration (mol m−2 s−1)
Leaf gas exchange system
Branch transpiration (mol m−2 s−1)
Heat balance sap flow sensors
Latent heat flux (W m−2)
Eddy covariance; 5 min averaging
Latent heat flux (W m−2)
Eddy covariance; 30 min averaging
Sensible heat flux (W m−2)
Eddy covariance; 5 min averaging
Sensible heat flux (W m−2)
Eddy covariance; 30 min averaging
Net CO2 assimilation (μmol m−2 s−1)
Leaf gas exchange system
Net CO2 exchange (μmol m−2 s−1)
Eddy covariance; 5 min averaging
Net CO2 exchange (μmol m−2 s−1)
Eddy covariance; 30 min averaging
Net Ecosystem Exchange (μmol m−2 s−1)
Fco2 plus change in profile CO2 storage
Leaf stomatal conductance (mol m−2 s−1)
Measured by gas exchange system
Branch stomatal conductance (mol m−2 s−1)
Calculated from sap flow and Tleaf
Canopy conductance (mol m−2 s−1)
Calculated from inverted Penman-Monteith equation
Horizontal wind speed (m s−1)
Measured with a 3-axis sonic anemometer at 64 m or in a gap
 This study was conducted at the Floresta National do Tapajos (FLONA) as part of LBA-ECO. The FLONA Tapajos is located on the eastern side of the Tapajos River, extending from 50 to 150 km south of Santarem, Para, Brazil (−3.020833°S, 54.972221°W). We worked at the km-83 [Goulden et al., 2004] and km-67 [Saleska et al., 2003] sites. The vegetation at both sites was closed tropical forest, with a canopy height of ∼40 m and emergent trees with heights up to 55 m. An analysis of precipitation showed the FLONA Tapajos was in the 27th driest percentile (±3%) of Amazonian forests for both annual precipitation and length of the wet season [Saleska et al., 2003]. The forest was on a broad, flat plateau. Soils were mainly yellow latosol clay (Haplic acrorthox).
 An area extending 2- to 3-km east of the main km-83 eddy covariance tower was selectively logged in September 2001 as part of the larger LBA-ECO experiment. The logging was patchy, creating a mosaic of new gaps within patches of relatively intact forest. The logging removed ∼12% of the large trees and increased the area of gaps from ∼4% to ∼12% [Miller et al., 2007; Figueira et al., 2008]. The rates and seasonality of CO2 exchange and the stem increment by large trees were largely unchanged by the logging [Figueira et al., 2008]. The stem increment by smaller, understory trees [Figueira et al., 2008] and the ventilation of the subcanopy [Miller et al., 2007] were increased following logging. The changes in subcanopy ventilation and small-tree growth imply that the logging opened the canopy and increased the amount of light reaching the understory, even in areas that were not immediately adjacent to gaps [Figueira et al., 2008].
2.2. Leaf Microclimate
 We made leaf level measurements at both field sites, working off a 45-m tall scaffold tower at km-67 and a 30-m tall tower at km-83. The km-83 scaffold was located 300 m from the eddy covariance tower. We measured leaf temperature (Tleaf;Table 1) with fine wire thermocouples (copper-constantan 0.005″ Omega, Stamford, CT) that were attached to the underside of leaves by threading the wire through the leaf and inserting the end of the thermocouple into the abaxial surface. The thermocouples were wired into an AM25T multiplexer attached to a Campbell Scientific 23X data logger (Campbell Scientific, Logan, UT) and the data were recorded at 1 Hz. We measured wind speed with a 3-axis sonic anemometer (CSAT-3, Campbell Scientific, Logan, UT); Photosynthetically active Photon Flux Density (PPFD) with silicon quantum sensors (LI190, Li-Cor Biosciences, Lincoln, NE); air temperature with thermistors mounted in radiation shields (model 107, Campbell Scientific, Logan, UT); and the irradiance at the leaf surfaces (PPFDleaf) with Gallium-Arsenide-Phosphide (GaAsP) sensors. The voltage of the GaAsP sensors was linearly related to PPFD [Pontaillier, 1990].
 We studied the leaf microclimate in three separate campaigns. In the first campaign, which occurred during July and August 2003, we rotated the instruments among several locations that were dominated by different plant functional types (gaps, understory, midcanopy, emergent), working for roughly a week at each site. The locations included two ground-level gaps that were located ∼50 m northeast of the km-83 tower, an understory site that was located at the base of the km-83 platform tower, a midcanopy site that was roughly 20-m above ground level at km-83, a canopy-top site at 30-m above ground level at km-83, and a canopy level site at 45-m at km-67.
 In the second campaign, which lasted the dry season from July to December 2004, we focused on three canopy tree species that were accessible from the top of the km-83 platform tower. We placed 50 thermocouples on leaves of Sextonia rubra, Micropholis sp., Lecythis lurida. In the third campaign, which lasted the dry season from July to December 2005 and focused on the same three species at km-83, we repeated the measurements made during the second campaign and added heat balance sap flow sensors [Sakuratani, 1981] on 6 branches. Observations of transpiration (Et-branch) were recorded every 2 min, along with temperature (Tleaf) and light (PPFDleaf). We measured the average area of a leaf for each branch on a subsample of leaves, and determined the total area of leaves by counting leaves. We then converted sap flow to leaf-area-based stomatal conductance (gs-branch) as:
where Et-branch is leaf-area based transpiration in mol m−2 s−1, P is atmospheric pressure in (Pa), ei is water vapor partial pressure in the leaf calculated from Tleaf, and ea is water vapor partial pressure in the air.
2.3. Leaf Gas Exchange Measurements
 We visited the field at least once a week from August to December 2004 to make photosynthesis measurements on three focal species (Sextonia rubra, Micropholis sp., Lecythis lurida) using a portable gas exchange system (LI 6400, Li-Cor Biosciences, Lincoln, NE). We made repeated measurements of the response of leaf gas exchange to irradiance holding leaf temperature constant at 30°C, and the response to leaf temperature holding flow, irradiance and CO2 concentration constant. The temperature response curves were made by placing leaves in the chamber at 30°C and 1000 μmol m−2s−1, allowing conditions to equilibrate for several minutes, and then raising the temperature in the chamber while recording the observations every 20 s. Each temperature response curve took 10 to 20 min, and the maximum achievable temperature was ∼42°C. Observations immediately after the initial temperature increase were often out of calibration and were removed from subsequent analysis. Rising temperature increased evaporative demand and Vapor Pressure Deficit (VPD) and decreased relative humidity (RH). The changes in temperature, VPD and RH were tightly correlated, and we were unable to determine which factor was better correlated with the rates of gas exchange.
2.4. Transient Leaf Gas Exchange Measurements
 We used the leaf gas exchange system to investigate the transient effect of a sudden, concurrent increase in temperature and irradiance. We placed cool, shaded (∼air temperature, < 500 μmol m−2 s−1) leaves into a prewarmed (35° to 38°), brightly illuminated (1000 μmol m−2 s−1) chamber to replicate the coincident increase in irradiance and temperature that occurs when a sun-fleck hits a leaf. We recorded the observations every 20 s, and discarded the observations during the first 1 to 2 min.
2.5. Whole Canopy Gas Exchange
 The tower observations were made at the km-83 site as described by Miller et al. , Goulden et al. , and da Rocha et al. . The turbulent fluxes of CO2 (FCO2), sensible heat (H), latent heat (λE), and momentum were determined at 64-m above ground level on a 67-m tall tower (Rohn 55G, Rohn, Peoria, IL, USA) using the eddy covariance technique [Baldocchi, 2003; Wofsy et al., 1993]. The wind and temperature were measured at 4 Hz with a 3-axis sonic anemometer (Campbell Scientific, Logan, UT). The CO2 and H2O densities were measured with a Li-Cor 7500 open path infrared gas analyzer (IRGA; Li-Cor Biosciences, Lincoln, NE) at 4 Hz. We mathematically rotated the wind speed so that both the mean cross and vertical wind were zero over each half hour, and made density corrections to the open path IRGA following Miller et al. .
 Measurements of the physical environment were recorded at 0.5 Hz, including: net radiation (Rn) with a ventilated net radiometer (Q*7.1; REBS, Seattle, WA, USA), Photosynthetically active Photon Flux Density (PPFDtower) with silicon quantum sensors (Li-Cor LI190), and air temperature (Tair-40m, Tair-64m) with ventilated thermistors (model 076B; Met One, Grants Pass, OR; model 107, Campbell Scientific, Logan, UT).
2.6. Canopy Conductance and Temperature
 We used the inverted Penman-Monteith equation to calculate canopy conductance (Gc), which is analogous to stomatal conductance on a ground area basis [Monteith and Unsworth, 1990]:
where Δ is the slope of the saturation vapor pressure deficit curve (Pa K−1), γ is the psychrometer constant (Pa K−1), ρa is the air density (kg m−3), δe is the air saturation deficit pressure (Pa), λE is the latent heat exchange (W m−2), cp is the specific heat of air at constant pressure (J kg−1 K−1), β is the Bowen ratio, and Ra is the aerodynamic resistance (s m−1). Aerodynamic resistance (Ra) was calculated as [Monteith and Unsworth, 1990]:
where U is the mean horizontal wind speed (m s−1) and u* is the friction velocity (m s−1).
where Tair-64 is air temperature at 64-m and H is the sensible heat flux (W m−2).
2.7. Transient Whole Canopy Gas Exchange
 Eddy covariance fluxes are usually calculated using a half-hour averaging time to ensure that the low frequency contributions to the flux are captured [Baldocchi, 2003]. This averaging period is longer than the dynamics we are interested in, such as stomatal closure and cloud movement, and half hour averages mask important transition states of the forest. We therefore recalculated the eddy covariance observations at km-83 using 5-min averages for flux analysis to investigate the transient response of whole forest CO2 exchange to changes in irradiance associated with cloud passage. We focused on naturally occurring intervals during the 2000 to 2002 dry seasons (July to December), when cloudy periods were followed by extended sunny conditions. We screened the tower top PPFD data (PPFDtower) to identify intervals with 10 cloudy minutes (PPFDtower < 600 μmol m−2 s−1) followed by 20 sunny minutes (PPFDtower > 900 μmol m−2 s−1). We divided these half hour intervals into six 5-min intervals and calculated the turbulent fluxes of sensible heat, latent heat, CO2, and momentum for each 5-min interval.
 We selected a 5-min averaging time as a compromise that would be short enough to resolve the expected physiological dynamics, and long enough to avoid markedly underestimating the flux carried by low frequency eddies. We tested the validity of the 5-min fluxes by regressing the covariance calculated for 30-min intervals using 30-min averaging times (FCO2-30min) against the average of the six fluxes calculated for that same period using 5-min averaging times (FCO2-5min) (Figure 1). We filtered the data to remove outliers, which were associated with nonstationary periods. The r2 between the two CO2 fluxes was 0.83 and the slope was 0.63. The slope indicates the 5-min fluxes systematically underestimated the 30-min fluxes by 37%, presumably due to the underestimation of transport by low frequency eddies. An analysis of the frequency-weighted cospectra confirmed that 5-min averaging underestimated the CO2 flux due to low frequency transport (Figure 2). The 5-min fluxes showed similar shapes among themselves and in comparison to the half-hour fluxes, with periods 4 to 6 (20 to 30 min) showing greater power associated with increased flux during sunny periods. Cospectra for latent heat, sensible heat, and momentum showed comparable patterns (figure not shown). These analyses confirm that FCO2-5min systematically underestimates the flux, while providing a reliable measure of the relative change from one 5-min interval to the next.
3.1. Whole Canopy CO2 Exchange
 Previous analyses of the relationship between irradiance and CO2 exchange at the km-83 site indicate that whole canopy photosynthesis saturates at a PPFDtower of 1000 μmol m−2 s−1 [Goulden et al., 2004]. We therefore analyzed the rates of NEE30min during periods with PPFDtower above 1000 μmol m−2 s−1 to determine the sensitivity of light-saturated CO2 exchange to air temperature (Tair-40m). NEE30min was relatively insensitive to changes in air temperature below 28.5°C and highly sensitive to changes in air temperature above 28.5°C (Figure 3). The 3°C rise from 28.5°C to 31.5°C resulted in a 10 μmol m−2 s−1 reduction in CO2 uptake, which corresponds to a 55 to 60% reduction in net ecosystem exchange and a 35 to 40% reduction in gross exchange, assuming a respiration rate of 10 μmol m−2 s−1 [Goulden et al., 2004]. The level of temperature sensitivity is similar to that previously described for km-83 by Goulden et al. . This sensitivity is unlikely to result from increasing soil respiration, since automated chamber measurements at the site indicate soil respiration changes by only ∼1 μmol m−2 s−1 from morning to afternoon [Goulden et al., 2004]. The response is strong (the rates of CO2 exchange changed markedly with just a few degree rise in air temperature) and occurs at a relatively modest temperature (many temperate ecosystems are exposed to air temperatures above 28.5°C during the growing season). The sensitivity of the forest to temperature was similar both before and after the logging. CO2 uptake declined at air temperatures above 29°C versus below 29°C in saturated light conditions (PPFDtower > 1000 μmol m−2 s−1) in a similar, statistically significant (P < 0.001) manner before (3.85 μmol m−2 s−1) and after (3.92 μmol m−2 s−1) the logging.
3.2. Leaf Microclimate
 Leaves are exposed to a rapidly fluctuating microenvironment associated with the passage of sun-flecks (PPFDleaf; Figure 4). Sun-flecks result from the movement of shadows cast by clouds or higher branches. Rapid changes in leaf temperature (Tleaf) were associated with the changes in PPFDleaf; Tleaf was linearly related to PPFDleaf at an r2 of 0.84 (figure not shown). Changes in Tleaf were damped and lagged by 1 to 2 min relative to changes in PPFDleaf, presumably as a result of thermal inertia.
 Tleaf varied moderately even during periods when PPFDleaf was constant, as a result of changing wind speed (U) and gap air temperature (Tair-gap). Extended periods of sunlight resulted in moderate increases in Tair-gap. Tair-gap varied by 1 to 2° between cloudy and sunny conditions and changed more slowly in response to changes in sunlight than did Tleaf. Increases in Tair-gap depended on the length of the sunny period; a relatively long sunny period that began at 12.95 Local Time (LT) caused air temperature to warm by ∼1.5° (Figures 4a and 4d). The rise and fall in Tair-gap caused a similar rise and fall in Tleaf. Wind speed also affected Tair-gap, with wind gusts at 13.05 LT ventilating the gap and reducing air temperature by ∼0.5° (Figures 4d and 4e).
 The above canopy light environment (PPFDtower) during midday (11–12 AM local time) was bimodal, with a near normal distribution around a sunny peak at ∼1450 μmol m−2 s−1 and a second near normal distribution around a cloudy peak at ∼450 μmol m−2 s−1 (Figure 5a). The central irradiance of each peak, and the relative occurrence of sunny periods compared to cloudy periods, varied with both time of day and season. The intensity of light at the leaf surfaces (PPFDleaf; Figure 5b), and the temperature difference between the leaf and the air (Tleaf; Figure 5c), were also bimodal. The bimodal patterns of both PPFDleaf and Tleaf were the result of sun-flecks. Strong and sustained sun-flecks invariably resulted in elevated leaf temperatures as a result of increased solar load. Leaves alternated between two states: a dimly lit state with leaf temperatures that were close to ambient air temperature and a brightly illuminated state with leaf temperatures that were elevated by several degrees.
3.3. Canopy Temperature
 We calculated canopy temperature two ways: (1) the average temperature of canopy-top leaves measured with thermocouples (Tleaf) and (2) the aerodynamic canopy temperature calculated from the momentum and sensible heat fluxes (Tcanopy). Both measures increased following increased sunlight (Figure 6). The average Tleaf reached a new value within 2 min of increased illumination, whereas Tcanopy required 7.5 min to reach a new value. This lag is likely a measurement artifact. Tleaf provides a direct measure of leaf temperature, and responds rapidly to increased illumination, whereas Tcanopy will not record an increase until any change in canopy temperature results in a change in the 5-min-averaged sensible heat flux past the tower top. Both Tleaf and Tcanopy indicated an increased leaf temperature of 2.5 to 3°C. The individual measurements of Tleaf indicated marked heterogeneity in the amount that canopy leaves warmed. Tcanopy provides a measure of the temperature of the leaves that contribute to aerodynamic drag. Both Tleaf and Tcanopy indicate the aggregate increase in leaf temperature, which reflects the combined effect of well-illuminated leaves that were warmed more than 2.5 to 3°C and poorly illuminated leaves that remained near air temperature.
3.4. Leaf Gas Exchange
 Leaf photosynthesis (An) declined gradually at leaf temperatures from 30.5° to 37.5°C and more rapidly above 37.5°C (Figure 7a). The decline in An above 37.5°C coincided with stomatal closure (gs-leaf; Figure 7b). Transpiration (Et-leaf) increased with leaf temperature and evaporative demand to 37.5°, and declined at higher temperatures (Figure 7c). The leaf gas exchange measurements indicate that An and gs-leaf are modestly sensitive to leaf temperatures from 30.5° to 37.5°C and more strongly sensitive to leaf temperatures above 37.5°C. The immediate cause of this response was not determined. Higher temperatures could result in reduced rates of photosynthesis due to photorespiration or other biochemical effects, and subsequent reductions in conductance. Alternatively, a change in vapor pressure deficit or relative humidity could cause stomatal closure and subsequent reduction in CO2 uptake. The reduction in Et-leaf above 37.5°C cannot be explained solely by a tendency for leaves to prevent transpiration from rising above, or water potential from dropping below, a physiological set point.
3.5. Leaf Gas Exchange Transient Response to Increased Illumination
 We investigated the effect of a simultaneous increase in light and temperature by placing cool, shaded leaves (Tleaf ∼ = air temperature, PPFDleaf < 500 μmol m−2 s−1) into a prewarmed, brightly illuminated leaf gas exchange chamber. These leaves rapidly equilibrated to the chamber temperature of 35 to 38°C, and began to show a decline in An, gs-leaf, and Et-leaf within 3 min of placement into the chamber (Figure 8). The rates of decline became more gradual after ∼6.5 min. The changes in CO2 uptake and conductance were tightly correlated, and it was not possible to determine whether the change in assimilation was causing the change in conductance or the change in conductance was causing the change in assimilation.
3.6. Whole Forest Transient Response to Increased Illumination
 We focused on forty-two 30-min intervals with 10 cloudy minutes followed by 20 sunny minutes. Most of these periods were in the afternoon. Cloudy periods (−10 to 0 min) had a mean PPFDtower of ∼300 μmoles m−2 s−1 and a range of 150 to 500 μmoles m−2 s−1. Sunny periods (0 to 20 min) had a mean PPFDtower of 1200 μmoles m−2 s−1 and a range of 1000 to 1500 μmoles m−2 s−1 (Figure 9a).
 Both latent (λE5min) and sensible (H5min) heat fluxes increased beginning 5 min after increased illumination, and remained relatively constant thereafter (Figure 9b). The 5-min lag was presumably a result of the time required for a change at the leaf surfaces to translate into a change in the 5-min-averaged turbulent flux past the tower top. The sum of λE5min and H5min was ∼23% less than the coincident net radiation (Rnet; Figure 9c). This imbalance is greater than the 13% reported for the site based on 30-min averaged fluxes [da Rocha et al., 2004], a pattern that is consistent with the underestimation of flux caused by 5-min averaging (Figures 1 and 2). The sum of λE5min and H5min was a constant fraction of Rnet from 5 to 20 min (Figure 9c). The sap-flow-based leaf conductance (gs-branch) increased during the first 6 min of illumination, and then declined from 6 to 20 min (Figure 9d). The eddy-covariance-based canopy conductance (Gc) increased after a 5-min lag and then declined from 10 to 20 min (Figure 9e). The CO2 flux (FCO2-5min) followed a trend that was similar to Gc, with an initial peak at 5 to 10 min followed by a decline at 10 to 20 min (Figure 9f).
4.1. Does Warming Negatively Impact Tropical Forest Photosynthesis?
 The leaf and canopy measurements confirmed that gas exchange decreases with increased temperature. The leaf measurements showed a ∼25% decrease in CO2 uptake with a 5-to-8° rise in leaf temperature above 30°C (Figure 7). The decrease in leaf CO2 exchange either resulted from or caused rapid stomatal closure. The 30-min whole-canopy observations indicated a 35-to-40% reduction in gross CO2 exchange with a 3°C rise in air temperature above 28.5°C (Figure 3). The decrease in canopy CO2 exchange either resulted from or caused the rapid reduction in canopy conductance.
 Both the leaf- and canopy-level observations indicate that these responses occurred within 5 min of increased temperature (Figures 6, 8, and 9), and that the negative response to temperature was stronger than the positive response to light, such that a simultaneous increase in both irradiance and temperature resulted in a decrease in photosynthesis. The sap-flow measurements indicated a rapid but transient increase in stomatal conductance following increased illumination (Figure 9d). The eddy covariance measurements indicated the response lagged increased illumination (Figure 9), but this lag was likely an artifact of delays in atmospheric transport, and the true rate of canopy gas exchange probably responded very rapidly to increased irradiance. The increase in canopy gas exchange was transient, and the rates of conductance and photosynthesis began to decline within 5 min of reaching a peak (Figure 9), and within a few minutes of the increases in leaf and canopy temperature (Figure 6).
4.2. Why is Whole Forest CO2 Uptake Highly Sensitive to Increased Temperature?
 A key question involves the strength of the warming effects we observed and whether the leaf- and canopy-level observations are congruent. The sensitivity of canopy gas exchange to an increase in aerodynamic temperature appears greater than the sensitivity of leaf gas exchange to an increase in leaf temperature. A 3°C rise in air temperature caused a 35 to 40% reduction in whole-canopy gross gas exchange (Figure 3), whereas a 5 to 8°C rise in leaf temperature caused a ∼25% reduction in leaf gas exchange (Figure 7).
 The difference between canopy- and leaf-level sensitivity appears to result from leaf-to-leaf heterogeneity in warming. Observations of the leaf microclimate indicate that leaves exist in two states: a well-illuminated, warm state and a poorly illuminated, cool state (Figures 4 and 5). The aerodynamic and air temperatures reflect the bulk properties of the physical environment. A few degree rise in aerodynamic temperature with increased illumination (Figure 6b) does not indicate that all the leaves in the canopy have warmed by a few degrees, but rather that the sunlit leaves warmed considerably while the shaded leaves remained relatively cool (Figure 6a). The most brightly illuminated leaves approached or exceeded the leaf temperate where gas exchange is curtailed, while the shaded leaves remained well below this threshold (Figure 6a). The rates of photosynthesis by the well-illuminated, warm leaves are presumably limited by temperature; the rates of photosynthesis by the poorly illuminated, cool leaves are limited by light. The rate of whole canopy gas exchange is heavily dependent on the fluxes by sunlit leaves; shaded leaves contribute disproportionately less to whole ecosystem gas exchange. Whole ecosystem gas exchange is therefore strongly sensitive to modest increases in bulk temperature.
4.3. What Are the Implications for Modeling Tropical Forest Gas Exchange?
 Our observations explain the strong sensitivity of canopy gas exchange to temperature, and the apparent discrepancy between leaf and canopy observations. The finding provides a mechanism that potentially increases the sensitivity of tropical forest to warming. The finding also has implications for modeling canopy gas exchange. The relationship between leaf gas exchange and leaf temperature is nonlinear (Figure 7). The combination of a nonliner leaf-level response and large, correlated heterogeneity in leaf irradiance and temperature (Figures 4 and 5) creates a nonlinear averaging problem for models of tropical forest gas exchange. The average response of leaves to their local environments differs from the response of leaves to the average environment. A similar pattern may occur across the landscape at any given moment associated with the movement of clouds and correlated changes in temperature and irradiance. Photosynthesis by cloud-covered forest patches may be limited by light; photosynthesis by brightly illuminated patches may be limited by temperature. The average response of canopies in a grid cell to their local physical conditions may differ from the response of canopies to the grid cell's average physical conditions.
4.4. Does Decreased Cloud Cover Increase or Decrease Tropical Forest CO2 Uptake?
 The light environment above many tropical forests is highly dynamic, with the rapid passage of small, shallow cumulus clouds that punctuate sunny intervals (Figure 4). Over 60% of the light at km-83 during the dry season arrives in intervals with less than 10-min duration (data not shown). The occurrence of frequent, brief cloudy intervals cools the canopy, and reduces the likelihood that leaf temperatures will reach the point of markedly diminished CO2 uptake (Figures 4 and 6). The frequency of cloud cover in the tropics has declined in the last decade, with a reduction in low-level clouds in the spring and fall [Wielicki et al., 2002]. Nemani et al.  suggested that tropical forest production is light limited, and that the observed reduction in cloud cover in the Amazon Basin has markedly increased NPP. However, the decrease in Amazonian cloud cover would also be expected to lead to longer sunny intervals and greater canopy heating. This increased heating might have amplified the high temperature stress on tropical leaves, resulting in a much smaller effect on tropical production than Nemani et al.  suggested. High aerosol optical depth due to smoke from biomass burning can also cool the canopy, reducing temperature stress and contributing to the observed increase in CO2 uptake during smoky periods [Oliveira et al., 2007] (C. E. Doughty et al., Effect of smoke on subcanopy diffuse light, canopy temperature, and CO2 uptake in an Amazon rainforest, submitted to Global Biogeochemical Cycles, 2008).
4.5. Will Climatic Warming Harm Tropical Forests?
 We have identified a mechanism that increases the sensitivity of tropical forest photosynthesis to warming; the brightly illuminated leaves that contribute disproportionately to canopy photosynthesis are warmed to the point that leaf gas exchange is curtailed. Tropical air temperatures are forecast to rise 2 to 5°C with global warming [Cramer et al., 2004; Zhang et al., 2001]. The air temperature in the tropics is expected to rise less than that in temperate or artic regions. But the plants that grow in the tropics may be more sensitive to warming than the plants in temperate or arctic regions, and the impact of warming on the tropical biota may exceed that on the temperate or arctic biota. Will warming harm tropical forests? At least three unknowns will determine the answer to this question: Can tropical plants acclimate to warming? Are tropical plants carbon limited? Will elevated CO2 offset the deleterious effects of warming on photosynthetic physiology and stomatal conductance?
 Most temperate plant species can acclimate to changing temperature conditions [Berry and Björkman, 1980], and it is possible that the plants at km-83 would simply acclimate to higher temperatures with a warmer climate. However, it remains uncertain whether most tropical species have the ability to acclimate to higher temperatures. The tropics are a thermally stable environment, and most tropical plants are not forced to acclimate to the wide seasonal fluctuations in temperature experienced by temperate ecosystems [Janzen, 1967]. There is evidence that tropical species are less likely than temperate species to acclimate to changing temperatures [Cunningham and Read, 2003a]. Tropical trees have a lower temperature optimum for carbon assimilation than for growth, which could cause increasing growth even as photosynthesis declines [Cunningham and Read, 2003b; Raich et al., 2006]. Biochemical analyses indicate that tropical trees possess large carbohydrate pools and that plant growth is not limited by the availability of carbon [Wurth et al., 2005]. A decrease in GPP associated with warming might not impact tropical forest NPP, if forest NPP is limited by something other than GPP such nutrients or water. Finally, an increase in atmospheric CO2 concentration might offset the impact of warming, either by providing increased substrates for carboxylation or by reducing the limitation on photosynthesis imposed by stomatal closure.
 Large changes in tropical forests primary production have the potential to amplify global climate change [Clark, 2004; Cox et al., 2000]. Further research is needed to determine whether the rapid, deleterious effects of warming on gas exchange that we have described will translate into a sustained reduction in primary production. Tropical forests currently appear close to a high temperature threshold, but whether they cross such a threshold in a warmer world will depend in a large measure on their ability to acclimate to high temperatures.
 We thank Helber Freitas, Michela Figueira, Augusto Maia, and Albert de Sousa for field help; Scott Miller and Humberto da Rocha for help with the tower measurements; UFPA in Santarem and Belem for help identifying species; Andrew McMillan, Jim Randerson, and Diane Pataki for comments; and the LBA-ECO Santarem field office for support. This work was funded by NASA as a component of LBA-ECO and an Earth System Science Fellowship.