SEARCH

SEARCH BY CITATION

References

  • Abe, H., Abo, T. & Aiba, H. (1999) Regulation of intrinsic terminator by translation in Escherichia coli: transcription termination at a distance downstream. Genes Cells 4, 8797.
  • Abo, T., Inada, T., Ogawa, K. & Aiba, H. (2000) SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon. EMBO J. 19, 37623769.
  • Aiba, H., Fujimoto, S. & Ozaki, N. (1982) Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein. Nucl. Acids Res. 10, 13451361.
  • Brenner, S. & Beckwith, J.R. (1965) Ochre mutants, a new class of suppressible nonsence mutants. J. Mol. Biol. 13, 629637.
  • Carter, A.P., Clemons, W.M., Brodersen, D.E., Morgan-Warren, R.J., Wimberly, B.T. & Ramakrishnan, V. (2000) Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 407, 340348.
  • Datsenko, K.A. & Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97, 66406645.
  • De La Cruz, J. & Vioque, A. (2001) Increased sensitivity to protein synthesis inhibitors in cells lacking tmRNA. RNA 7, 17081716.
  • Gillet, R. & Felden, B. (2001) Emerging views on tmRNA-mediated protein tagging and ribosome rescue. Mol. Microbiol. 42, 879885.
  • Hausner, T.-P., Geigenmüller, U. & Nierhaus, K.H. (1988) The allosteric three-site model for ribosomal elongation cycle: New insights into the mechanisms of aminoglycosides, thiostrepton, and viomycin. J. Biol. Chem. 263, 1310313111.
  • Hayes, C.S., Bose, B. & Sauer, R.T. (2002) Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli. Proc. Natl. Acad. Sci. USA 99, 34403445.
  • Huang, C., Wolfgang, M.C., Withey, J., Koomey, M. & Friedman, D.I. (2000) Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability. EMBO J. 19, 10981107.
  • Ishizuka, H., Hanamura, A., Kunimura, T. & Aiba, H. (1993) A lowered concentration of cAMP receptor protein caused by glucose is an important determinant for catabolite repression in Escherichia coli. Mol. Microbiol. 10, 341350.
  • Jerinic, O. & Joseph, S. (2000) Conformational changes in the ribosome induced by translational miscoding agents. J. Mol. Biol. 304, 707713.
  • Julio, S.M., Heithoff, D.M. & Mahan, M.J. (2000) SsrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis. J. Bacteriol. 182, 15581563.
  • Karzai, A.W., Roche, E.D. & Sauer, R.T. (2000) The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue. Nature Struct. Biol. 7, 449455.
  • Karzai, A.W., Susskind, M.M. & Sauer, R.T. (1999) SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J. 18, 37933799.
  • Keiler, K.C., Waller, P.R. & Sauer, R.T. (1996) Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271, 990993.
  • Kirby, J.E., Trempy, J.E. & Gottesman, S. (1994) Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli. J. Bacteriol. 176, 20682081.
  • Komine, Y., Kitabatake, M., Yokogawa, T., Nishikawa, K. & Inokuchi, H. (1994) A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc. Natl. Acad. Sci. USA 91, 92239227.
  • Muto, A., Fujihara, A., Ito, K.I., Matsuno, J., Ushida, C. & Himeno, H. (2000) Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses. Genes Cells 5, 627635.
  • Oh, B.K. & Apirion, D. (1991) 10Sa RNA, a small stable RNA of Escherichia coli, is functional. Mol. Gen. Genet. 229, 5256.
  • Puglisi, J.D., Blanchard, S.C., et al. (2000a) Aminoglycoside antibiotics and decoding. In: Ribosome: Structure, Function, Antibiotics, and Cellular Interactions (eds R.A.Garrett, S.R.Douthwaite, A.Liljas, et al.), pp. 419429. Washington, DC: ASM Press.
  • Puglisi, J.D., Blanchard, S.C. & Green, R. (2000b) Approaching translation at atomic resolution. Nature Struct. Biol. 7, 855861.
  • Ranquet, C., Geiselmann, J. & Toussaint, A. (2001) The tRNA function of SsrA contributes to controlling repression of bacteriophage Mu prophage. Proc. Natl. Acad. Sci. USA 98, 1022010225.
  • Retallack, D.M. & Friedman, D.I. (1995) A role for a small stable RNA in modulating the activity of DNA-binding proteins. Cell 83, 227235.
  • Retallack, D.M., Johnson, L.L. & Friedman, D.I. (1994) Role for 10Sa RNA in the growth of lambda-P22 hybrid phage. J. Bacteriol. 176, 20822089.
  • Roche, E.D. & Sauer, R.T. (1999) SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J. 18, 45794589.
  • Roche, E.D. & Sauer, R.T. (2001) Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons. J. Biol. Chem. 276, 2850928515.
  • Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • Tate, W.P. & Mannering, S.A. (1996) Three, four or more: the translational stop signal at length. Mol. Microbiol. 21, 213219.
  • Ueda, K., Yamamoto, Y., Ogawa, K., Abo, T., Inokuchi, H. & Aiba, H. (2002) Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by suppressor tRNAs. Genes Cells 7, 509519.
  • Withey, J. & Friedman, D. (1999) Analysis of the role of trans-translation in the requirement of tmRNA for λimmP22 growth in Escherichia coli. J. Bacteriol. 181, 21482157.