The formation of complex bacterial communities known as biofilms begins with the interaction of planktonic cells with a surface in response to appropriate environmental signals. We report the isolation and characterization of mutants of Pseudomonas aeruginosa PA14 defective in the initiation of biofilm formation on an abiotic surface, polyvinylchloride (PVC) plastic. These mutants are designated surface attachment defective (sad ). Two classes of sad mutants were analysed: (i) mutants defective in flagellar-mediated motility and (ii) mutants defective in biogenesis of the polar-localized type IV pili. We followed the development of the biofilm formed by the wild type over 8 h using phase-contrast microscopy. The wild-type strain first formed a monolayer of cells on the abiotic surface, followed by the appearance of microcolonies that were dispersed throughout the monolayer of cells. Using time-lapse microscopy, we present evidence that microcolonies form by aggregation of cells present in the monolayer. As observed with the wild type, strains with mutations in genes required for the synthesis of type IV pili formed a monolayer of cells on the PVC plastic. However, in contrast to the wild-type strain, the type IV pili mutants did not develop microcolonies over the course of the experiments, suggesting that these structures play an important role in microcolony formation. Very few cells of a non-motile strain (carrying a mutation in flgK ) attached to PVC even after 8 h of incubation, suggesting a role for flagella and/or motility in the initial cell-to-surface interactions. The phenotype of these mutants thus allows us to initiate the dissection of the developmental pathway leading to biofilm formation.
Biofilms are sessile bacterial communities adhered to a surface. In most environments, bacteria are thought to reside predominantly in biofilms (Costerton et al., 1995), in contrast to planktonic or free-swimming cells typically studied in the laboratory. Pseudomonas aeruginosa has been shown to form biofilms on a number of surfaces, including the tissues of the cystic fibrosis lung (Govan and Deretic, 1996) and on abiotic surfaces such as contact lenses and catheter lines (Nickel et al., 1985; 1989; Miller and Ahearn, 1987; Fletcher et al., 1993). This ubiquitous organism is also the cause of nosocomial infections in immunocompromised patients and individuals with severe burns (Bodey et al., 1983).
Biofilms of P. aeruginosa (and other microorganisms) are formed from individual planktonic cells in a complex and presumably highly regulated developmental process. Planktonic cells are thought to initiate interactions with a surface in response to various signals, including the nutritional status of the environment (Wimpenny and Colasanti, 1997; O'Toole and Kolter, 1998; Pratt and Kolter, 1998). The fully developed surface-attached community can be a highly structured with distinct architectural and physical/chemical properties (Costerton et al., 1995). These biofilm-grown cells are thought to be markedly different from their planktonic counterparts, based on a number of lines of evidence. For example, P. aeruginosa growing on a surface has increased expression of algC, a gene required for the synthesis of extracellular polysaccharides (Davies et al., 1993; Davies and Geesey, 1995). Biofilm-grown P. aeruginosa has also been shown to acquire increased resistance to antibiotics (Hoyle and Costerton, 1991). To date, most studies of biofilms have focused on characterizing the organisms that comprise these bacterial communities, the physical/chemical properties of biofilms and the physical forces that effect the bacterium's initial interactions with a surface (Costerton et al., 1995; Fletcher, 1996). However, little is known about the molecular genetic mechanisms regulating the initiation of biofilm formation and the development of these complex bacterial communities.
We present the isolation of mutants of P. aeruginosa PA14 defective in the initiation of biofilm formation on an abiotic surface. We report the molecular characterization of two classes of mutants defective in initiation of biofilm formation: (i) mutants defective in flagellar-mediated motility; and (ii) mutants defective in type IV pili biogenesis. The analysis of the flagellar and type IV pili mutants with time-lapse phase-contrast microscopy has allowed us to begin the dissection of the early development of a P. aeruginosa biofilm.
Isolation of mutants defective in biofilm formation
We generated a collection of ≈2400 random transposon mutants of P. aeruginosa PA14 using the transposon Tn5-B30(Tcr) (Simon et al., 1989). This collection of P. aeruginosa mutants was screened in microtitre dishes made of polyvinylchloride (PVC) to test for their ability to form a biofilm on an abiotic surface. The cells were allowed to grow in the wells of the microtitre dishes in a minimal M63 medium supplemented with glucose and casamino acids (CAA), using a technique described previously (O'Toole and Kolter, 1998), to assess their ability to form a biofilm. The biofilm was detected by staining with crystal violet (CV), a purple dye that stains the bacterial cells but does not stain the PVC plastic. After addition of CV and incubation at room temperature for ≈10 min, excess CV and unattached cells were removed by vigorous and repeated washing of the microtitre plates with water. An example of the phenotype of the wild-type strain is shown in Fig. 1. The biofilm is observed as a ring of CV-stained cells that forms at the interface between air and medium. Of the ≈2400 mutants screened, 15 mutants (0.5%) unable to form such a biofilm were isolated. These mutants were designated surface attachment defective or sad. The biofilm formation phenotypes of representative sad mutants are shown in Fig. 1.
Any strains exhibiting poor growth under these screening conditions might give the same phenotype as mutants unable to initiate formation of a biofilm. Therefore, all of the putative sad mutants were grown in liquid minimal M63 medium supplemented with glucose and CAA (the same medium used to screen for mutants). Of the 15 putative sad mutants tested, 13 grew as well as the wild-type strain but were unable to form a biofilm. The other two putative sad mutants had severe growth defects relative to the wild type and were not analysed further.
We performed Southern blot analysis of the 13 sad mutants that did not form a biofilm to determine the number of transposon insertions in each strain. A PCR-generated DNA fragment from the IS50 of Tn5 was used to probe EcoRI-digested chromosomal DNA (there are no EcoRI sites in Tn5-B30). This analysis revealed a single hybridizing band for each strain, consistent with each sad mutant having only a single transposon insertion (data not shown). The further analyses of two classes of mutants (totalling 8 of 13) isolated in this screen is presented below. The analyses of the other five sad mutants will be presented elsewhere.
We reported previously that mutants of P. fluorescens originally identified as unable to initiate biofilm formation on PVC were also defective for biofilm formation on a variety of other abiotic surface (O'Toole and Kolter, 1998). We tested the P. aeruginosa sad mutants for their ability to form a biofilm on abiotic surfaces other than PVC, including polystyrene, polycarbonate and polypropylene. The wild-type strain can form a biofilm on all of these surfaces. All of the sad mutants originally isolated on PVC were also defective for biofilm formation on these other surfaces (data not shown).
Non-motile mutants are defective in biofilm formation
It has been reported that motility is required for both biofilm formation (on biotic and abiotic surfaces) and pathogenesis (Montie et al., 1982; de Weger et al., 1987; Grant et al., 1993; Korber et al., 1994; Simpson et al., 1995). However, these studies generally involved the analysis of molecularly uncharacterized non-motile mutants. Therefore, in addition to the phenotypic analyses described above, all sad mutants were assessed for their motility phenotype on 0.3% agar (minimal M63 medium supplemented with glucose and CAA). Of the 13 mutants tested, three strains (sad-36, sad-39 and sad-42) were found to be non-motile (see Fig. 2). In a typical experiment after 24 h of growth at room temperature, the wild type and two representative mutants defective in pili biogenesis (pilB and pilC) clearly migrated from the point of inoculation, whereas the sad-36, sad-39, and sad-42 strains did not. One of these mutants, sad-36, was chosen for further analysis.
The sad-36::Tn5(Tcr) insertion was mobilized into a wild-type genetic background by phage SN-T-mediated transduction as reported (Jensen et al., 1998). Eighteen out of 18 Tcr transductants (indicating inheritance of the Tn5 element) were non-motile and unable to make a biofilm, demonstrating that the single insertion in this strain was responsible for the observed phenotypes. The DNA sequence flanking the Tn5 insertion in sad-36 was determined using the arbitrary PCR method (see Experimental procedures) and compared with the GenBank database with BLASTX (Altschul et al., 1990). BLASTX translates DNA sequence in all six reading frames and compares these predicted protein sequences with GenBank. The determined DNA sequence flanking the Tn5 element (≈375 nt), when translated, revealed a partial ORF with ≈40% identity and ≈65% similarity to HAP1 (flgK ), the flagellar-associated hook protein 1 of Salmonella typhimurium and Escherichia coli. Mutations in the flgK locus in these organisms results in the synthesis of an incomplete flagellum, which renders the strains non-motile (Homma et al., 1990). The localization of the Tn5 insert of the strain carrying the sad-36 allele to a gene required for flagellar function is consistent with the non-motile phenotype of this strain.
Type IV pili are required for biofilm formation
We analysed the DNA sequence flanking the transposon inserts of the other sad mutants (as described in the section above and in the Experimental procedures). Comparison of the translated DNA sequence flanking the Tn5 element of a number of sad mutants to the GenBank database revealed that five strains carried mutations in genes required for the synthesis of type IV pili.
Type IV pili have been shown to be important for the adherence to and colonization of eukaryotic cell surfaces and are thought to play a role in pathogenesis (Woods et al., 1980; Ramphal et al., 1984; Doig et al., 1988; Bieber et al., 1998). Four of the five mutants defective in type IV pili biogenesis identified in the screen had mutations in the pilBCD operon, which is thought to code for accessory factors required for pili assembly and function (Nunn et al., 1990). The strains carrying alleles sad-31, sad-33 and sad-34 have mutations in the pilB gene. The DNA sequence flanking the transposon insertions in sad-33 and sad-34 was identical, indicating that these two strains were probably siblings. The mutations carried in sad-31 and sad-33/sad-34 map to two different locations within pilB (data not shown). The strain carrying allele sad-29 has a mutation in the pilC gene. Because the pilBCD locus may form an operon, it is possible that polarity onto pilD is actually causing the phenotype. However, it has been shown in P. aeruginosa PAO1 that mutations in any of these loci result in the loss of the synthesis of pili as indicated by resistance to the pilus-specific bacteriophage PO4 and visual inspection using electron microscopy (Nunn et al., 1990). The fifth mutant, sad-25, maps to yet a third locus, a homologue of the pilY1 gene of P. aeruginosa PAO1. In P. aeruginosa, the pilY1 gene is in a cluster of genes (including pilV, pilW, pilX, pilY2, and pilE) that is required for type IV pili biogenesis (Russell and Darzins, 1994; Alm and Mattick, 1995; Alm et al., 1996). Mutations in the pilY homologues in Neisseria spp. (called pilC in these organsims) can also result in a non-piliated phenotype (Jonsson et al., 1991; Rudel et al., 1992). Consistent with the mapping of these mutations to genes required for type IV pili biogenesis was their resistance to lysis by phage F116 (Pemberton, 1973), which uses type IV pili as its receptor (data not shown).
It has been shown that type IV pili are required for a form of surface-associated movement known as twitching motility. Twitching motility is thought to be a consequence of the extension and retraction of type IV pili, which propels the bacteria across a surface by an undescribed mechanism (Bradley, 1980; Whitchurch et al., 1990; Darzins, 1994). We assessed the twitching motility phenotype of the mutants carrying alleles sad-25 (pilY1), sad-29 (pilC), sad-31 (pilB), and sad-33 (pilB). The wild-type, a representative flagellar mutant (flgK ), and four type IV pili mutants are shown in 3Fig. 3A. In addition to forming a colony on the surface of the agar plate (1.5% agar), Twitch+ strains of P. aeruginosa PA14 form a haze of growth that surrounds the point of inoculation (Bradley, 1980; Whitchurch et al., 1990). This assay differs from the test for flagella-mediated motility, which is performed by inoculating cells onto 0.3% agar plates (see Fig. 2). Furthermore, strains capable of twitching motility have a spreading colony morphology, whereas strains defective in twitching motility produce rounded colonies (Whitchurch et al., 1990; Darzins, 1994). This difference in colony shape can also be observed in 3Fig. 3A.
Twitching motility can also be assessed by phase-contrast microscopy. At the microscopic level, the edge of the colonies of strains proficient in twitching motility are highly irregular. This is thought to be a consequence of the surface movement associated with type IV pili (Whitchurch et al., 1990; Darzins, 1994). Mutants lacking functional type IV pili have smooth-edged colonies. To further confirm that our strains did not have functional type IV pili, we observed the edges of wild-type and pili-deficient mutants using phase-contrast microscopy. As shown in 3Fig. 3B, the wild-type strain has the expected irregular colony edge and the representative pili-deficient strain (sad-31/pilB) has the expected smooth colony edge phenotype. All the pili-defective mutants behaved in a fashion identical to sad-31 (results not shown). Transmission electron-microscopic analysis of the pili mutants confirmed the lack of these structures on the surface of the mutant cells (not shown).
Mutants defective in flagellar-mediated motility and type IV pili biogenesis define two steps in a developmental pathway
We used the sad mutants isolated in this study as tools to initiate the dissection of the early steps in biofilm formation. To follow the initiation of biofilm formation by the wild-type and sad mutants, we directly visualized the formation of the biofilm on PVC using phase-contrast microscopy. A small tab of PVC plastic (≈3 mm × ≈6 mm) was incubated in the well of a microtitre dish that has been inoculated with ≈106 cfu ml−1 of the appropriate strain in minimal M63 medium supplemented with glucose and CAA. After incubation for various times at 37°C, the plastic tab was removed from the microtitre dish with ethanol-sterilized forceps, rinsed with 1 ml of sterile minimal M63 medium and placed on a slide. The slide was examined using phase-contrast microscopy (400× magnification) as described in Experimental procedures.
4Figure 4A shows a time-course of the development of a biofilm on PVC by the wild-type strain over 7.5 h at 37°C as observed using phase-contrast microscopy. As early as 30 min after inoculation, the wild type formed a dispersed monolayer of bacterial cells attached to the surface of the PVC plastic. A progressively more dense monolayer of cells formed on the surface over the next 3–4 h. By 5 h, and continuing until at least 7.5 h, this monolayer almost completely covered the PVC surface and became punctuated by microcolonies that are distributed across the surface of the PVC plastic and comprise multiple layers of cells. Typically, the wild-type microcolonies were ≈3–5 layers of cells thick.
We directly visualized the ability of the type IV pili-deficient and non-motile strains to form a biofilm on PVC using phase-contrast microscopy and compared their phenotypes with the wild-type strain. For the representative non-motile strain (carrying a mutation in flgK ), few to no cells were observed attached the PVC plastic even after 8 h of incubation in the presence of the PVC surface. All other non-motile strains analysed had a phenotype identical to the flgK mutant. This observation is consistent with previous results showing the importance of motility in biofilm formation (Montie et al., 1982; de Weger et al., 1987; Grant et al., 1993; Korber et al., 1994; Simpson et al., 1995).
We also directly visualized the biofilm formation phenotype of a representative mutant defective in pili biogenesis (pilB). At the early time points (≤ 3 h), there was little difference in the biofilm formation phenotype of the wild type and the type IV pili mutants; both the wild-type and the pili-defective strain form a dispersed monolayer of cells on the surface of the PVC plastic. By 8 h, in contrast to the aggregates of cells formed by the wild-type strain, the pili-defective mutants did not develop these characteristic microcolonies. Furthermore, the wild-type strain almost completely covered the PVC surface with a dense, tightly packed layer of cells. The phenotype of the type IV pili mutants at this 8 h time point was unchanged from that observed at 3 h, that is a dispersed monolayer of cells. The other mutants defective in pili biogenesis (pilC and pilY1) had similar phenotypes (data not shown).
A role for twitching motility in biofilm formation
To define better the events that lead to microcolony formation by the wild type and to determine whether surface-based twitching motility plays a role in biofilm formation, we used phase-contrast time-lapse microscopy to follow a developing biofilm. Using time-lapse microscopy, we watched individual microcolonies formed by the wild-type strain over a period of 56 min (with images acquired at 15 s intervals). Shown in Fig. 5 is a montage of nine phase-contrast micrographs taken during biofilm formation by the wild-type strain every 7 min between 360 and 416 min after inoculation. Several microcolonies were followed through the course of this experiment to illustrate the movement of cells across the PVC plastic surface.
In Fig. 5, the white arrow indicates the position of a microcolony that is first clearly visible in B, becomes larger (C) but has dispersed by D. This microcolony does not reform during the course of this experiment (D–I). A series of time-lapse micrographs taken at 15 s intervals between 374 min (C) and 381 min (D) show that this microcolony disperses because the cells comprising the colony move apart while still remaining associated with the plastic surface (data not shown but can be viewed as a time-lapse movie at http://gasp.med.harvard.edu/GO5.html).
The black arrow points to a large microcolony evident in 5Fig. 5A. This large microcolony becomes progressively smaller (B–F) and eventually splits into two small, adjacent microcolonies (G). In H, these two adjacent microcolonies form a larger single colony that has grown slightly in size when visualized 7 min later (I).
The formation of microcolonies in this system is due to, in a large part, the aggregation of cells found dispersed in the monolayer of cells on the surface and not solely to the growth of the bacterial cells. This point is illustrated further by data presented in H and I. The dark circle in I indicates a dense, well-formed microcolony. However, this colony is not evident 7 min previously in H. The elapsed 7 min between the micrograph shown in H and the micrograph shown in I represents less than the time needed for a single population doubling under these growth conditions. Furthermore, analysis of the time-lapse film shows that this microcolony forms by recruiting adjacent cells from the monolayer (data not shown here, but can be viewed as a time-lapse movie at http://gasp.med.harvard.edu/GO5. html). The data described above and shown in Fig. 5 demonstrate the dynamic nature of microcolony formation and dispersal during the course of biofilm development.
As discussed above, type IV pili are required for surface-based twitching motility and mutants defective in type IV pili biogenesis do not make the microcolonies characteristic of the wild-type strain. It is important to note that none of the behaviours described above for the wild-type were observed in the representative type IV pili mutant, pilB. As shown above in Fig. 4, this strain does not form microcolonies when observed either after 8 h of growth or when monitored by time-lapse microscopy (data not shown).
Flagellar-mediated motility, type IV pili and the initiation of biofilm formation
Among the non-biofilm forming mutants isolated in this screen were those defective in flagellar-mediated motility (Fig. 2). Motility has also been suggested to be involved in biofilm formation in other model systems (Montie et al., 1982; de Weger et al., 1987; Smit et al., 1989; Korber et al., 1994; O'Toole and Kolter, 1998; Pratt and Kolter, 1998). Therefore, the isolation of non-motile strains helps to validate our experimental approach. Furthermore, for one of the mutants (sad-36), we have shown that the insertion element in this strain is in a structural gene required for the synthesis of a functional flagellum. For a more complete discussion of the role of flagella-mediated motility in biofilm development in Pseudomas and E. coli see Pratt and Kolter (1998).
Using the sad mutants to initiate the dissection of the biofilm developmental pathway
We have used the sad mutants, in conjunction with phase-contrast microscopy, to begin to elucidate the early steps in biofilm formation on an abiotic surface. The goal of these studies is to correlate specific bacterial structures with defined steps in the biofilm developmental pathway. Our current model for biofilm formation is shown in Fig. 6. The direct visual inspection of the biofilm formation phenotype of non-motile strains on PVC plastic revealed that, compared with the wild-type strain, only very few cells could make a stable interaction with this abiotic surface (Fig. 4B). Furthermore, our studies were performed with a molecularly characterized non-motile strain with a defined defect in flagellar synthesis. Earlier studies used uncharacterized strains that may have had pleiotrophic defects (Lawrence et al., 1987; Mills and Powelson, 1996). Our observations, which concur with previous studies (Lawrence et al., 1987), suggest that motility is important for the cells to make initial contacts with an abiotic surface. From these experiments it is not clear whether the flagellum plays a direct role as an adhesin as previously suggested for P. fluorescens (Lawrence et al., 1987), or, as also proposed, that flagellar-mediated motility is required to bring the cell within close proximity of the surface to overcome repulsive forces between the bacterium and the surface to which it will eventually attach (Mills and Powelson, 1996). It is possible that flagellar-mediated motility is required for both of these processes.
The direct visual analysis of mutants defective in type IV pili biogenesis revealed that early biofilm formation by these mutants (≤ 3 h) was very similar to the wild-type strain, in that all of these strains form a dispersed monolayer of cells on the PVC plastic. However, the wild-type strain eventually forms a dense, tightly packed monolayer of cells punctuated by microcolonies on the plastic surface; the pili-defective mutants remained as a dispersed monolayer of cells (Fig. 4B and C). Based on our observations, it appears that type IV pili are required downstream of flagella but still early in this developmental pathway.
The data above suggest possible roles for type IV pili and type IV pili-mediated twitching motility in P. aeruginosa biofilm development. It is possible that type IV pili play a direct role in stabilizing interactions with the abiotic surface (that may have been initiated via flagella or flagella-mediated motility) and/or in the cell-to-cell interactions required to form a microcolony. Type IV pili-mediated twitching motility may also be necessary for cells to migrate along the surface to form the multicell aggregates characteristic of the wild-type strain. In support of such a role for twitching motility in biofilm formation, we present evidence that the wild-type strain does move across the surface and form cell aggregates by recruiting cells from the adjacent monolayer (Fig. 5). It is important to note that strains defective in pili biogenesis (like the pilB mutant) express neither twitching motility nor microcolony formation phenotypes.
The microscopic colonies formed by P. aeruginosa PA14 on PVC plastic during biofilm development are reminiscent of the macroscopic aggregates formed by Myxococcus during the development of fruiting bodies (Kaiser, 1984). Furthermore, the development of these fruiting bodies by Myxococcus has also been shown to require type IV pili (Wu and Kaiser, 1995). Interestingly, recent studies suggest a requirement for homoserine lactones (HSLs) to express type IV pili-mediated twitching motility (Glessner et al., 1998). These data suggest a role for cell-to-cell signalling early in microcolony formation in addition to the established role of HSLs in the later stages of biofilm development (Davies et al., 1998). However, it is also important to note that type IV pili mutants can still interact with the abiotic surface, suggesting the existence of additional, unidentified adhesions that promote cell-to-surface interactions.
The requirement for type IV pili in biofilm formation on an abiotic surface has an additional important implication. As mentioned above, type IV pili have been shown to be important for bacterial adhesion to eukaryotic cell surfaces and pathogenesis (Woods et al., 1980; Ramphal et al., 1984; Sato et al., 1988; Ramphal et al., 1991; Tang et al., 1995; Bieber et al., 1998). These data suggest that there may be an overlap in factors required for the initiation of biofilm formation on an abiotic surface and the factors necessary for bacterial attachment and pathogenesis in vivo. If this is the case, the biofilm formation assay presented here may serve as a simple primary screen for identifying novel virulence factors. The analysis of additional mutants isolated in this screen and their testing in models of pathogenesis is in progress.
Bacterial strains, media and chemicals
P. aeruginosa PA14 was grown on rich medium (Luria Bertani; LB) or minimal medium (as indicated in each experiment) at 37°C, unless otherwise noted. The minimal medium used was minimal M63 salts (Pardee et al., 1959) supplemented with glucose (0.2%), MgSO4 (1 mM) and, where indicated, casamino acids (CAA, 0.5%). Antibiotics were added at the following concentrations: for E. coli, ampicillin (Ap), 150 μg ml−1; naladixic acid (Nal), 20 μg ml−1; for P. aeruginosa, Tc, 150 μg ml−1. All enzymes for DNA manipulation were purchased from New England Biolabs. All plasmids were constructed in E. coli JM109 using standard protocols (Ausubel et al., 1990). Plasmids were transferred to P. aeruginosa by electroporation (Bloemberg et al., 1997). Transductions were performed as reported (Jensen et al., 1998). Assays for assessing flagellar-mediated motility were performed as reported (O'Toole and Kolter, 1998). Twitching motility was assessed as described (Whitchurch et al., 1990).
Transposon mutants were generated with Tn5-B30(Tcr) using a modification of published protocols (Simon et al., 1989) as described (O'Toole and Kolter, 1998). The resulting transposon mutants were screened as described below.
Biofilm formation assay Screen for mutants defective in biofilm formation
This assay is based on the ability of bacteria to initiate biofilm formation on polyvinylchloride plastic (PVC). The initiation of biofilm formation was assayed as described (O'Toole and Kolter, 1998).
Quantification of biofilm formation
Biofilm formation was quantified as described (O'Toole and Kolter, 1998). Briefly, the crystal violet was solubilized in 95% ethanol and the absorbance was determined at 600 nm.
Visualization of bacterial cells attached to PVC was performed by phase-contrast microscopy (400× magnification) using a Nikon Diaphot 200 inverted microscope (Nikon). The images were captured with a black and white CCD72 camera integrated with a Power Macintosh 8600/300 computer with video capability (Cupertino). The images were processed using SCION IMAGE software, a modification of NIH IMAGE (NIH) by the Scion Corporation.
DNA sequence flanking transposon mutants were determined using arbitrary PCR (Caetano-Annoles, 1993) as described (O'Toole and Kolter, 1998). Southern blots were performed as follows: chromosomal DNA of the sad mutants was prepared (Pitcher et al., 1989), digested with EcoRI (Tn5-B30 does not have a EcoRI site) and transferred to GeneScreen Plus (NEN Research Products) as reported (Ausubel et al., 1990). The hybridization was performed with the ECL direct nucleic acid labelling and detection system (Amersham Life Science) according to the manufacturer's instructions without modification. The DNA probe used was derived from the insertion sequence element (IS50) of Tn5 and generated using PCR with the Tn5 element as a template. The PCR primers used to generate the probe were IS50R.1 (5′-GCTTCCTTTAGCAGCCCTTGCGC-3′) and IS50R.2 (5′-CTTCCATGTGACCTCCTAACATGG-3′).
We thank L. G. Rahme for providing us with strain P. aeruginosa PA14. This work was supported by grant number GM58213 from the NIH to R.K. and Fellowship DRG of the Cancer Research Fund of the Damon Runyon–Walter Winchell Foundation to G.A.O. We also thank the Micro Core Facility at the Harvard Medical School for DNA sequencing and L. A. Pratt and S. E. Finkel for a critical review of the manuscript.