SEARCH

SEARCH BY CITATION

References

  • 1
    Ansaldi, M., Lepelletier, M., Méjean, V. (1996) Site-specific mutagenesis by using an accurate recombinant polymerase chain reaction method. Anal Biochem 234: 110111.
  • 2
    Boccard, F. & Prentki, P. (1993) Specific interaction of IHF with RIBs, a class of bacterial repetitive DNA elements located at the 3′ end of transcription units. EMBO J 12: 50195027.
  • 3
    Bracco, L., Kotlarz, D., Kolb, A., Diekmann, S., Buc, H. (1989) Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli. EMBO J 8: 42894296.
  • 4
    Cadwell, R.C. & Joyce, G.F. (1992) Randomization of genes by PCR mutagenesis. PCR Methods Appl 2: 2833.
  • 5
    Déthiollaz, S., Eichenberger, P., Geiselmann, J. (1996) Influence of DNA geometry on transcriptional activation in Escherichia coli. EMBO J 15: 54495458.
  • 6
    Filutowicz, M., Grimek, H., Appelt, K. (1994) Purification of the Escherichia coli integration host factor (IHF) in one chromatographic step. Gene 147: 149150.
  • 7
    Friedman, D.I. (1988) Integration host factor: a protein for all reasons. Cell 55: 545554.
  • 8
    Gamas, P., Burger, A.C., Churchward, G., Caro, L., Galas, D., Chandler, M. (1986) Replication of pSC101: effects of mutations in the E. coli DNA binding protein IHF. Mol Gen Genet 204: 8589.
  • 9
    Gartenberg, M.R. & Crothers, D.M. (1991) Synthetic DNA bending sequences increase the rate of in vitro transcription initiation at the Escherichia coli lac promoter. J Mol Biol 219: 217230.
  • 10
    Giladi, H., Igarashi, K., Ishihama, A., Oppenheim, A.B. (1992a) Stimulation of the phage lambda pL promoter by integration host factor requires the carboxy terminus of the alpha-subunit of RNA polymerase. J Mol Biol 227: 985990.
  • 11
    Giladi, H., Koby, S., Gottesman, M.E., Oppenheim, A.B. (1992b) Supercoiling, integration host factor, and a dual promoter system, participate in the control of the bacteriophage lambda pL promoter. J Mol Biol 224: 937948.
  • 12
    Giladi, H., Murakami, K., Ishihama, A., Oppenheim, A.B. (1996) Identification of an UP element within the IHF binding site at the pL1-pL2 tandem promoter of bacteriophage lambda. J Mol Biol 260: 484491.
  • 13
    Giladi, H., Koby, S., Prag, G., Engelhorn, M., Geiselmann, J., Oppenheim, A.B. (1998) Participation of IHF and a distant UP element in the stimulation of the phage λ PL promoter. Mol Microbiol 30: 443451.
  • 14
    Goosen, N. & Van De Putte, P. (1995) The regulation of transcription initiation by integration host factor. Mol Microbiol 16: 17.
  • 15
    Herbert, M., Kolb, A., Buc, H. (1986) Overlapping promoters and their control in Escherichia coli : the gal case. Proc Natl Acad Sci USA 83: 28072811.
  • 16
    Igarashi, K. & Ishihama, A. (1991) Bipartite functional map of the E. coli RNA polymerase alpha subunit: involvement of the C-terminal region in transcription activation by cAMP-CRP. Cell 65: 10151022.
  • 17
    Malan, T.P., Kolb, A., Buc, H., McClure, W.R. (1984) Mechanisms of CRP-cAMP activation of the lac operon transcription initiation activation of the P1 promoter. J Mol Biol 180: 881909.
  • 18
    Menendez, M., Kolb, A., Buc, H. (1987) A new target for CRP action at the malT promoter. EMBO J 6: 44274434.
  • 19
    Murakami, K., Kimura, M., Owens, J.T., Meares, C.F., Ishihama, A. (1997) The two α subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Proc Natl Acad Sci USA 94: 17091714.
  • 20
    Nash, H.A. (1996) The E. coli HU and IHF proteins: accessory factors for complex protein–DNA assemblies. In Regulation of Gene Expression in Escherichia coli. Lin, E.C.C., and Lynch, A.S. (eds). London: Chapman and Hall, pp. 149179.
  • 21
    Niu, W., Kim, Y., Tau, G., Heyduk, T., Ebright, R.H. (1996) Transcription activation at class II CAP-dependent promoters: two interactions between CAP and RNA polymerase. Cell 87: 11231134.
  • 22
    Nunes-Düby, S.E., Smith-Mungo, L.I., Landy, A. (1995) Single base-pair precision and structural rigidity in a small IHF-induced DNA loop. J Mol Biol 253: 228242.
  • 23
    Pérez-Martin, J. & Espinosa, M. (1994) Correlation between DNA bending and transcriptional activation at a plasmid promoter. J Mol Biol 241: 717.
  • 24
    Raibaud, O., Vidal-Ingigliardi, D., Kolb, A. (1991) Genetic studies on the promoter of malT, the gene that encodes the activator of the Escherichia coli maltose regulon. Res Microbiol 142: 937942.
  • 25
    Rao, L., Ross, W., Appleman, J.A., Gaal, T., Leirmo, S., Schlax, P.J., et al (1994) Factor-independent activation of rrnB P1: an ‘extended’ promoter with an upstream element that dramatically increases promoter strength. J Mol Biol 235: 14211435.
  • 26
    Rice, P.A., Yang, S.W., Mizuuchi, K., Nash, H.A. (1996) Crystal structure of an IHF–DNA complex: a protein-induced DNA U-turn. Cell 87: 12951306.
  • 27
    Van Rijn, P.A., Van De Putte, P., Goosen, N. (1991) Analysis of the IHF binding site in the regulatory region of bacteriophage Mu. Nucleic Acids Res 19: 28252834.
  • 28
    Ross, W., Gosink, K.K., Salomon, J., Igarashi, K., Zou, C., Ishihama, A., et al (1993) A third recognition element in bacterial promoters: DNA binding by the α subunit of RNA polymerase. Science 262: 1413.
  • 29
    Sambrook, J., Fritsch, E.F., Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • 30
    Thompson, J.F. & Landy, A. (1988) Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes. Nucleic Acids Res 16: 96879705.
  • 31
    Van Ulsen, P. (1996) Regulation of transcription initiation from the early promoter of bacteriophage Mu. PhD thesis, University of Leiden, Holland.
  • 32
    Van Ulsen, P., Hillebrand, M., Kainz, M., Collard, R., Zulianello, L., Van De Putte, P., et al (1997a) Function of the C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase in basal expression and integration host factor-mediated activation of the early promoter of bacteriophage Mu. J Bacteriol 179: 530537.
  • 33
    Van Ulsen, P., Hillebrand, M., Zulianello, L., Van De Putte, P., Goosen, N. (1997b) The integration host factor–DNA complex upstream of the early promoter of bacteriophage Mu is functionally symmetric. J Bacteriol 179: 30733075.