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  • Alexander, D.M. & St John, A.C. (1994) Characterization of the carbon starvation-inducible and stationary phase-inducible gene slp encoding an outer membrane lipoprotein in Escherichia coli. Mol Microbiol 11: 10591071.
  • Altschul, W., Gish, W., Miller, W., Myers, E.W., Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403410.
  • Arfin, S.M., Long, A.D., Ito, E.T., Tolleri, L., Riehle, M.M., Paegle, E.S., Hatfield, G.W. (2000) Global gene expression profiling in Escherichia coli K12. J Biol Chem 275: 2967229684.DOI: 10.1074/jbc.m002247200
  • Atlung, T. & Ingmer, H. (1997) H-NS: a modulator of environmentally regulated gene expression. Mol Microbiol 24: 717.
  • Bachmann, B.J. (1983) Linkage map of Escherichia coli K-12. Microbiol Rev 47: 180230.
  • Barth, M., Marschall, C., Muffler, A., Fischer, D., Hengge-Aronis, R. (1995) Role for the histone-like protein H-NS in growth phase-dependent and osmotic regulation of σ-dependent genes in Escherichia coli. J Bacteriol 177: 34553464.
  • Bertin, P., Terao, E., Lee, E.H., Lejeune, P., Colson, C., Danchin, A., Collatz, E. (1994) The H-NS protein is involved in the biogenesis of flagella in Escherichia coli. J Bacteriol 176: 55375540.
  • Bertin, P., Benhabiles, N., Krin, E., Laurent-Winter, C., Tendeng, C., Turlin, E., et al. (1999) The structural and functional organization of H-NS-like proteins is evolutionarily conserved in Gram-negative bacteria. Mol Microbiol 31: 319330.
  • Blattner, F.R., Plunkett, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277: 14531474.DOI: 10.1126/science.277.5331.1453
  • Booth, I.R. (1999) The regulation of intracellular pH in bacteria. In Bacterial Responses to pH. Wiley, J. (ed.). Chichester: Novartis Foundation Symposium, pp. 1937.
  • Bridges, B.A. & Timms, A. (1998) Effect of endogenous carotenoids and defective RpoS sigma factor on spontaneous mutation under starvation conditions in Escherichia coli: evidence for the possible involvement of singlet oxygen. Mutat Res 403: 2128.DOI: 10.1016/s0027-5107(98)00013-x
  • Bruni, C.B., Colantuoni, V., Sbordone, L., Cortese, R., Blasi, F. (1977) Biochemical and regulatory properties of Escherichia coli K-12 his mutants. J Bacteriol 130: 410.
  • Caramel, A. & Schnetz, K. (1998) Lac and lambda repressors relieve silencing of the Escherichia coli bgl promoter. Activation by alteration of a repressing nucleoprotein complex. J Mol Biol 284: 875883.DOI: 10.1006/jmbi.1998.2191
  • Castanie-Cornet, M., Penfound, T., Smith, D., Elliott, J., Foster, J. (1999) Control of acid resistance in Escherichia coli. J Bacteriol 181: 35253535.
  • Ceschini, S., Lupidi, G., Coletta, M., Pon, C.L., Fioretti, E., Angeletti, M. (2000) Multimeric self-assembly equilibria involving the histone-like protein H-NS – a thermodynamic study. J Biol Chem 275: 729734.
  • Cotter, P.A., Chepuri, V., Gennis, R.B., Gunsalus, R.P. (1990) Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product. J Bacteriol 172: 63336338.
  • Csonka, L.N. & Epstein, W. (1996) Osmoregulation. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology. Neidhardt, F.C. (ed.). Washington, DC: American Society for Microbiology Press, pp. 12101224.
  • Dame, R.T., Wyman, C., Goosen, N. (2000) H-NS mediated compaction of DNA visualised by atomic force microscopy. Nucleic Acids Res 28: 35043510.DOI: 10.1093/nar/28.18.3504
  • De Biase, D., Tramonti, A., Bossa, F., Visca, P. (1999) The response to stationary-phase stress conditions in Escherichia coli: role and regulation of the glutamic acid decarboxylase system. Mol Microbiol 32: 11981211.
  • Dorman, C.J., Hinton, J.C.D., Free, A. (1999) Domain organization and oligomerization among H-NS-like nucleoid-associated proteins in bacteria. Trends Microbiol 7: 124128.DOI: 10.1016/s0966-842x(99)01455-9
  • Ebel, W. & Trempy, J.E. (1999) Escherichia coli RcsA, a positive activator of colanic acid capsular polysaccharide synthesis, functions to activate its own expression. J Bacteriol 181: 577584.
  • Epstein, W. & Kim, B.S. (1971) Potassium loci in Escherichia coli K-12. J Bacteriol 108: 639644.
  • Gajiwala, K.S. & Burley, S.K. (2000) HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria. J Mol Biol 295: 605612.DOI: 10.1006/jmbi.1999.3347
  • Gausing, K. (1977) Regulation of ribosome production in Escherichia coli: synthesis and stability of ribosomal RNA and of ribosomal protein messenger RNA at different growth rates. J Mol Biol 115: 335354.
  • Hayat, M.A. & Mancarella, D.A. (1995) Nucleoid proteins. Micron 26: 461480.DOI: 10.1016/0968-4328(95)00022-4
  • Hengge-Aronis, R. (1999) Interplay of global regulators and cell physiology in the general stress response of Escherichia coli. Curr Opin Microbiol 2: 148152.DOI: 10.1016/s1369-5274(99)80026-5
  • Hofmann, K., Bucher, P., Falquet, L., Bairoch, A. (1999) The PROSITE database, its status in 1999. Nucleic Acids Res 27: 215219.DOI: 10.1093/nar/27.1.215
  • Hoheisel, J.D. & Vingron, M. (2000) Transcriptional profiling: is it worth the money? Res Microbiol 151: 113119.DOI: 10.1016/s0923-2508(00)00120-0
  • Jacquet, M., Cukier-Kahn, R., Pla, J., Gros, F. (1971) A thermostable protein factor acting on in vitro DNA transcription. Biochem Biophys Res Commun 45: 15971607.
  • Jordi, B.J. & Higgins, C.F. (2000) The downstream regulatory element of the proU operon of Salmonella typhimurium inhibits open complex formation by RNA polymerase at a distance. J Biol Chem 275: 1212312128.
  • Jordi, B.J., Fielder, A., Burns, C.M., Hinton, J.C.D., Dover, N., Ussery, D.W., Higgins, C.F. (1997) DNA binding is not sufficient for H-NS-mediated repression of proU expression. J Biol Chem 272: 1208312090.
  • Kadner, R.J. (1996) Cytoplasmic membrane. In Escherichia coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C. (ed.). Washington, DC: American Society for Microbiology Press, pp. 5887.
  • Kato, A., Tanabe, H., Utsumi, R. (1999) Molecular characterization of the PhoP-PhoQ two-component system in Escherichia coli K-12: identification of extracellular Mg2+-responsive promoters. J Bacteriol 181: 55165520.
  • Kempf, B. & Bremer, E. (1998) Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolarity environments. Arch Microbiol 170: 319330.DOI: 10.1007/s002030050649
  • Kunst, F., Ogasawara, N., Moszer, I., Albertini, A.M., Alloni, G., Azevedo, V., et al. (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390: 249256.DOI: 10.1038/36786
  • Kyrpides, N.C. & Ouzounis, C.A. (1999) Whole-genome sequence annotation: going wrong with confidence. Mol Microbiol 32: 886887.
  • La Teana, A., Brandi, A., Falconi, M., Spurio, R., Pon, C.L., Gualerzi, C.O. (1991) Identification of a cold shock transcriptional enhancer of the Escherichia coli gene encoding nucleoid protein H-NS. Proc Natl Acad Sci USA 88: 1090710911.
  • Laurent-Winter, C., Ngo, S., Danchin, A., Bertin, P. (1997) Role of Escherichia coli histone-like nucleoid-structuring protein in bacterial metabolism and stress response. Eur J Biochem 244: 767773.
  • Lin, J., Lee, I.S., Frey, J., Slonczewki, J.L., Foster, J.W. (1995) Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli. J Bacteriol 177: 40974104.
  • Mahan, M.J., Slauch, J.M., Mekalanos, J.J. (1996) Environmental regulation of virulence gene expression in Escherichia, Salmonella and Shigella sp. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology. Neidhardt, F.C. (ed.). Washington, DC: American Society for Microbiology Press, pp. 28032813.
  • Miller, J.H. (1992) A Short Course in Bacterial Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • Morrissey, J.H. (1981) Silver stain for proteins in polyacrylamide gels: a modified procedure with enhanced uniform sensitivity. Anal Biochem 117: 307310.
  • Moszer, I. (1998) The complete genome of Bacillus subtilis: from sequence annotation to data management and analysis. FEBS Lett 430: 2836.DOI: 10.1016/s0014-5793(98)00620-6
  • Newman, E.B., Lin, R.T., D'Ari, R. (1992) The leucine-Lrp regulon in E. coli: a global response in search of a raison d'être. Cell 68: 617619.
  • Richmond, C.S., Glasner, J.D., Mau, R., Jin, H., Blattner, F.R. (1999) Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Res 27: 38213835.DOI: 10.1093/nar/27.19.3821
  • Schröder, O. & Wagner, R. (2000) The bacterial DNA-binding protein H-NS represses ribosomal RNA transcription by trapping RNA polymerase in the initiation complex. J Mol Biol 298: 737748.
  • Shevchenko, A., Wilm, M., Vorm, O., Mann, M. (1996) Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels. Anal Chem 68: 850858.DOI: 10.1021/ac950914h
  • Shi, X., Waasdorp, C., Bennett, G. (1993) Modulation of acid-induced amino acid decarboxylase gene expression by hns in Escherichia coli. J Bacteriol 175: 11821186.
  • Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., et al. (1995) Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett 360: 125131.DOI: 10.1016/0014-5793(95)00079-o
  • Smyth, C.P., Lundback, T., Renzoni, D., Siligardi, G., Beavil, R., Layton, M., et al. (2000) Oligomerization of the chromatin-structuring protein H-NS. Mol Microbiol 36: 962972.DOI: 10.1046/j.1365-2958.2000.01917.x
  • Soutourina, O., Kolb, A., Krin, E., Laurent-Winter, C., Rimsky, S., Danchin, A., Bertin, P. (1999) Multiple control of flagella biosynthesis in Escherichia coli: Role of H-NS protein and the cyclic AMP/catabolite activator protein complex in transcription of the flhDC master operon. J Bacteriol 181: 75007508.
  • Sprenger, G.A. (1995) Genetics of pentose-phosphate pathway enzymes of Escherichia coli K-12. Arch Microbiol 164: 324330.DOI: 10.1007/s002030050270
  • Spurio, R., Falconi, M., Brandi, A., Pon, C.L., Gualerzi, C.O. (1997) The oligomeric structure of nucleoid protein H-NS is necessary for recognition of intrinsically curved DNA and for DNA bending. EMBO J 16: 17951805.DOI: 10.1093/emboj/16.7.1795
  • Stock, A.M., Mottonen, J.M., Stock, J.B., Schutt, C.E. (1989) Three-dimensional structure of CheY, the response regulator of bacterial chemotaxis. Nature 337: 745749.
  • Sturr, M.G., Krulwich, T.A., Hicks, D.B. (1996) Purification of a cytochrome bd terminal oxidase encoded by the Escherichia coli app locus from a delta cyo delta cyd strain complemented by genes from Bacillus firmus OF4. J Bacteriol 178: 17421749.
  • Talukder, A.A., Akira, I., Akiko, N., Susumu, U., Akira, I. (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181: 63616370.
  • Tao, H., Bausch, C., Richmond, C., Blattner, F.R., Conway, T. (1999) Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J Bacteriol 181: 64256440.
  • Tendeng, C., Badaut, C., Krin, E., Gounon, P., Ngo, S., Danchin, A., et al. (2000) Isolation and characterization of vicH, encoding a new pleiotropic regulator in Vibrio cholerae. J Bacteriol 182: 20262032.
  • Tupper, A.E., Owen-Hughes, T.A., Ussery, D.W., Santos, D.S., Ferguson, D.J.P., Sidebotham, J.M., et al. (1994) The chromatin-associated protein H-NS alters DNA topology in vitro. EMBO J 13: 258268.
  • Ueguchi, C., Suzuki, T., Yoshida, T., Tanaka, K., Mizuno, T. (1996) Systematic mutational analysis revealing the functional domain organization of Escherichia coli nucleoid protein H-NS. J Mol Biol 263: 149162.DOI: 10.1006/jmbi.1996.0566
  • Utsumi, R., Katayama, S., Ikeda, M., Igaki, S., Nakagawa, H., Miwa, A., et al. (1992) Cloning and sequence analysis of the evgAS genes involved in signal transduction of Escherichia coli K-12. Nucleic Acids Symp Series 27: 149150.
  • Whitfield, C. & Roberts, I.S. (1999) Structure, assembly and regulation of expression of capsules in Escherichia coli. Mol Microbiol 31: 13071319.
  • Williams, R.M. & Rimsky, S. (1997) Molecular aspects of the E. coli nucleoid protein, H-NS: a central controller of gene regulatory networks. FEMS Microbiol Lett 156: 175185.DOI: 10.1016/s0378-1097(97)00397-2
  • Williams, R.M., Rimsky, S., Buc, H. (1996) Probing the structure, function and interactions of the Escherichia coli H-NS and StpA proteins using dominant negative derivatives. J Bacteriol 178: 43354343.
  • Yamashino, T., Uegushi, C., Mizuno, T. (1995) Quantitative control of the stationary phase-specific sigma, σS, in Escherichia coli: involvement of the nucleoid protein H-NS. EMBO J 14: 594602.
  • Zhang, A., Rimsky, S., Reaban, M.E., Buc, H., Belfort, M. (1996) Escherichia coli protein analogs StpA and H-NS: regulatory loops, similar and disparate effects on nucleic acid dynamics. EMBO J 15: 13401349.