SEARCH

SEARCH BY CITATION

References

  • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Nucleic Acids Res25: 33893402.
  • Arnold, H.P., Zillig, W., Ziese, U., Holz, I., Crosby, M., Utterback, T., et al. (2000) A novel lipothrixvirus, SIFV, of the extremely thermophilic crenarchaeon Sulfolobus.Virology267: 252266.DOI: 10.1006/viro.1999.0105
  • Baranyi, U., Klein, R., Lubitz, W., Krüger, D.H., and Witte, A. (2000) The archaeal halophilic virus-encoded Dam-like methyltransferase M.φCh1-I methylates adenine residues and complements dam mutants in the low salt environment of Escherichia coli.Mol Microbiol35: 11681179.
  • Besemer, J., and Borodovsky, M. (1999) Heuristic approach to deriving models for gene finding.Nucleic Acids Res19: 39113920.
  • Black, L.W. (1989) DNA packaging in dsDNA bacteriophages.Annu Rev Microbiol43: 267292.
  • Brüssow, H., and Desiere, F. (2001) Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages.Mol Microbiol39: 213222.
  • Casjens, S., Hatfull, G., and Hendrix, R. (1992) Evolution of dsDNA tailed-bacteriophage genomes.Semin Virol3: 383 397.
  • George, D.G., Yeh, L.S., and Barker, W.C. (1983) Unexpected relationships between bacteriophage lambda hypothetical proteins and bacteriophage T4 tail-fiber proteins.Biochem Biophys Res Commun2: 10611068.
  • Gilakjan, Z.A., and Kropinski, A.M. (1999) Cloning and analysis of the capsid morphogenesis genes of Pseudomonas aeruginosa bacteriophage D3: another example of protein chain mail?J Bacteriol181: 72217227.
  • Gropp, F., Palm, P., and Zillig, W. (1989) Expression and regulation of Halobacterium halobium phage φH genes.Can J Microbiol35: 182188.
  • Gropp, F., Grampp, B., Stolt, P., Palm, P., and Zillig. W. (1992) The immunity-conferring plasmid pφHL from the Halobacterium salinarium phage φH: nucleotide sequence and transcription.Virology190: 4554.
  • Hallet, B., and Sherratt, D.J. (1997) Transposition and site-specific recombination: adapting DNA cut-and-paste mechanisms to a variety of genetic rearrangements.FEMS Microbiol Rev21: 157178.
  • Hatfull, G.F., and Sarkis, G.J. (1993) DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics.Mol Microbiol7: 395405.
  • Hendrix, R.W., Lawrence, J.G., Hatfull, G.F., and Casjens, S. (2000) The origins and ongoing evolution of viruses.Trends Microbiol8: 504507.
  • Hoess, R.H., and Abremski, K. (1984) Interaction of the bacteriophage P1 recombinase Cre with the recombining site loxP.Proc Natl Acad Sci USA81: 10261029.
  • Ishikawa, J., and Hotta, K. (1999) FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G+C content.FEMS Microbiol Lett174: 251253.
  • Kalinin, K., Stegalkinka, S., and Yarmolinsky, M. (2000) pTAR encoded proteins in plasmid partitioning.J Bacteriol182: 18891894.
  • Ken, R., and Hackett, N.R. (1991) Halobacterium halobium strains lysogenic for phage φH contain a protein resembling coliphage repressors.J Bacteriol173: 955960.
  • Klein, R., Greineder, B., Baranyi, U., and Witte, A. (2000) The structural protein E of the archaeal virus φCh1: evidence for processing in Natrialba magadii during virus maturation.Virology276: 376387.
  • Landy, A. (1989) Dynamic, structural, and regulatory aspects of lambda site-specific recombination.Annu Rev Biochem58: 913949.
  • Luo, Y., Pfister, P., Leisinger, T., and Wasserfallen, A. (2001) The genome of archaeal prophage ψM100 encodes the lytic enzyme responsible for autolysis of Methanothermobacter wolfeii.J Bacteriol183: 57885792.
  • Mediavilla, J., Jain, S., Kriakov, J., Ford, M.E., Duda, R.L., Jacobs, W.R., et al. (2000) Genome organization and characterization of mycobacteriophage. Bxb1.Mol Microbiol38: 955970.DOI: 10.1046/j.1365-2958.2000.02183.x
  • Montag, D., Hashemolhosseini, S., and Henning, U. (1990) Receptor-recognizing proteins of T-even type bacteriophages. The receptor-recognizing area of proteins 37 of phages T4 TuIa and TuIb.J Mol Biol216: 327 334.
  • Ng, W.L., and DasSarma, S. (1993) Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100.J Bacteriol175: 45844596.
  • Palm, P., Schleper, C., Grampp, B., Yeats, S., McWilliam, P., Reiter, W.D., and Zillig, W. (1991) Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae.Virology185: 242250.
  • Paunesku, T., Mittal, S., Protic, M., Oryhon, J., Korolev, S.V., Joachimiak, A., and Woloschak. G.E. (2001) Proliferating cell nuclear antigen (PCNA): ringmaster of the genome.Int J Radiat Biol77: 10071021.
  • Pfeifer, F., and Ghahraman, P. (1993) Plasmid pHH1 of Halobacterium salinarium: characterization of the replicon region, the gas vesicle gene cluster and insertion elements.Mol Gen Genet238: 193200.
  • Pfister, P., Wasserfallen, A., Stettler, R., and Leisinger, T. (1998) Molecular analysis of. Methanobacterium phage ψM2.Mol Microbiol30: 233244.DOI: 10.1046/j.1365-2958.1998.01073.x
  • Popa, M.P., McKelvey, T.A., Hempel, J., and Hendrix, R.W. (1991) Bacteriophage HK97 structure: wholesale covalent cross-linking between the major head shell subunits.J Virol65: 32273227.
  • Reiter, W.-D., Palm, P., and Zillig, W. (1988) Transcription termination in the archaebacterium Sulfolobus: signal structures and linkage to transcription initiation.Nucleic Acids Res16: 24452459.
  • Saint Girons, I.S., Bourhy, P., Ottone, C., Picardeau, M., Yelton, D., Hendrix, R.W., et al. (2000) The LE1 bacteriophage replicates as a plasmid within Leptospira biflexa: construction of an L. biflexa– Escherichia coli shuttle vector.J Bacteriol182: 57005705.
  • Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • Sanger, F., Coulson, A.R., Hong, G.F., Hill, D.F., and And Peterson, G.B. (1982) Nucleotide sequence of bacteriophage lambda DNA.J Mol Biol162: 729773.
  • Schnabel, H. (1984) An immune strain of Halobacterium halobium carries the invertible L segment of phage φH as a plasmid.Proc Natl Acad Sci USA81: 10171020.
  • Schnabel, H., and Zillig, W. (1984) Circular structure of the genome of phage φH in a lysogenic.Halobacterium halobium. Mol Gen Genet193: 422426.
  • Schnabel, H., Zillig, W., Pfäffle, M., Schnabel, R., Michel, H., and Delius, H. (1982) Halobacterium halobium phage φH.EMBO J1: 8792.
  • Stark, W.M., Boocock, M.R., and Sherratt, D.J. (1992) Catalysis by site-specific recombinases.Trends Genet8: 432439.
  • Stolt, P., and Zillig, W. (1992) In vivo studies on the effects of immunity genes on early lytic transcription in the Halobacterium salinarium phage φH.Mol Gen Genet235: 197204.
  • Stolt, P., and Zillig, W. (1993a) In vivo and in vitro analysis of transcription of the L region from the Halobacterium salinarium phage φH: definition of a repressor-enhancing gene.Virology195: 649658.DOI: 10.1006/viro.1993.1416
  • Stolt, P., and Zillig, W. (1993b) Antisense RNA mediates transcriptional processing in an archaebacterium, indicating a novel kind of RNase activity.Mol Microbiol7: 875882.
  • Stolt, P., and Zillig, W. (1993c) Structure specific ds/ss-RNase activity in the extreme halophile.Halobacterium salinarium. Nucleic Acids Res21: 55955599.
  • Stolt, P., and Zillig, W. (1994) Transcription of the halophage φH repressor gene is abolished by transcription from an inversely oriented lytic promoter.FEBS Lett344: 125128.
  • Stolt, P., Grampp, B., and Zillig, W. (1994) Genes for DNA cytosine methyltransferases and structural proteins, expressed during lytic growth by the phage φH of the archaebacterium.Halobacterium salinarium. Biol Chem Hoppe-Seyler375: 747757.
  • Tang, S.-L., Fisher, C., Ngui, K., Nuttall, S.D., and Dyall-Smith, M.L. (2002) HF2: a double-stranded DNA tailed haloarchaeal virus with a mosaic genome.Mol Microbiol44: 283296.
  • Van Sinderen, D., Karsens, H., Kok, J., Terpstra, P., Ruiters, M.H., Venema, G., and Nauta. A. (1996) Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t.Mol Microbiol19: 13431355.
  • Wikoff, W.R., Liljas, L., Duda, R.L., Tsuruta, H., Hendrix, R.W., and Johnson, J.E. (2000) Topologically linked protein rings in the bacteriophage HK97 capsid.Science289: 21292133.
  • Witte, A., Baranyi, U., Klein, R., Sulzner, M., Luo, C., Wanner, G., et al. (1997).Characterization of Natronobacterium magadii phage φCh1, a unique archaeal phage containing DNA and RNA.Mol Microbiol23: 603616.