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  • Aiba, H., Adhya, S., and De Crombrugghe, B. (1981) Evidence for two functional gal promoters in intact Escherichia coli cells. J Biol Chem 256: 1190511910.
  • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Bagdasarian, M., Lurz, R., Ruckert, B., Franklin, F.C., Bagdasarian, M.M., Frey, J., and Timmis, K.N. (1981) Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene 16: 237247.
  • Bechhofer, D.H., Kornacki, J.A., Firshein, W., and Figurski, D.H. (1986) Gene control in broad host range plasmid RK2: expression, polypeptide product, and multiple regulatory functions of Korb. Proc Natl Acad Sci USA 83: 394398.
  • Beloin, C., McKenna, S., and Dorman, C.J. (2002) Molecular dissection of VirB, a key regulator of the virulence cascade of Shigella flexneri. J Biol Chem 277: 1533315344.
  • Burrus, V., Pavlovic, G., Decaris, B., and Guédon, G. (2002) Conjugative transposons: the tip of the iceberg. Mol Microbiol 46: 601610.
  • Celli, J., and Trieu-Cuot, P. (1998) Circularization of Tn916 is required for expression of the transposon-encoded transfer functions: characterization of long tetracycline- inducible transcripts reading through the attachment site. Mol Microbiol 28: 103117.
  • Cheng, Q., Paszkiet, B.J., Shoemaker, N.B., Gardner, J.F., and Salyers, A.A. (2000) Integration and excision of a Bacteroides conjugative transposon, CTnDOT. J Bacteriol 182: 40354043.
  • Davies, R.W. (1980) DNA sequence of the int-xis-Pi region of the bacteriophage lambda; overlap of the int and xis genes. Nucleic Acids Res 8: 17651782.
  • Ditta, G., Stanfield, S., Corbin, D., and Helinski, D.R. (1980) Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc Natl Acad Sci USA 77: 73477351.
  • Dorn, E., Hellwig, M., Reineke, W., and Knackmuss, H.J. (1974) Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch Microbiol 99: 6170.
  • Eriksson, S.K., Liu, T., and Haggard-Ljungquist, E. (2000) Interacting interfaces of the P4 antirepressor E and the P2 immunity repressor C. Mol Microbiol 36: 11481155.
  • Friedman, D.I. (1992) Interaction between bacteriophage lambda and its Escherichia coli host. Curr Opin Genet Dev 2: 727738.
  • Gerdes, K., Moller-Jensen, J., and Bugge Jensen, R. (2000) Plasmid and chromosome partitioning: surprises from phylogeny. Mol Microbiol 37: 455466.
  • Gerhardt, P., Murray, R.G.E., Costilow, R.N., Nester, E.W., Wood, W.A., Krieg, N.R., and Briggs Phillips, G., (eds). (1981) Manual of Methods for General Bacteriology. Washington, D.C.: American Society for Microbiology.
  • Hacker, J., and Carniel, E. (2001) Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. EMBO Rep 2: 376381.
  • Hacker, J., and Kaper, J.B., (eds). (2002) Pathogenicity Islands and the Evolution of Pathogenic Microbes. Berlin, Heidelberg, New York: Springer.
  • Harley, C.B., and Reynolds, R.P. (1987) Analysis of E. coli promoter sequences. Nucleic Acids Res 15: 23432361.
  • Herrero, M., De Lorenzo, V., and Timmis, K.N. (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172: 65576567.
  • Ho, Y.S., Wulff, D.L., and Rosenberg, M. (1983) Bacteriophage lambda protein cII binds promoters on the opposite face of the DNA helix from RNA polymerase. Nature 304: 703708.
  • Ihaka, R., and Gentleman, R. (1996) R: a language for data analysis and graphics. J Comp Graph Stat 5: 299314.
  • Jagura-Burdzy, G., Macartney, D.P., Zatyka, M., Cunliffe, L., Cooke, D., Huggins, C., et al. (1999) Repression at a distance by the global regulator KorB of promiscuous IncP plasmids. Mol Microbiol 32: 519532.
  • Jagura-Burdzy, G., and Thomas, C.M. (1994) KorA protein of promiscuous plasmid RK2 controls a transcriptional switch between divergent operons for plasmid replication and conjugative transfer. Proc Natl Acad Sci USA 91: 1057110575.
  • Jaspers, M.C., Meier, C., Zehnder, A.J., Harms, H., and Van Der Meer, J.R. (2001) Measuring mass transfer processes of octane with the help of an alkSalkB:: gfp-tagged Escherichia coli. Environ Microbiol 3: 512524.
  • Kristensen, C.S., Eberl, L., Sanchez-Romero, J.M., Givskov, M., Molin, S., and De Lorenzo, V. (1995) Site-specific deletions of chromosomally located DNA segments with the multimer resolution system of broad-host-range plasmid RP4. J Bacteriol 177: 5258.
  • Kuhstoss, S., and Rao, R.N. (1991) Analysis of the integration function of the streptomycete bacteriophage phi C31. J Mol Biol 222: 897908.
  • Larbig, K.D., Christmann, A., Johann, A., Klockgether, J., Hartsch, T., Merkl, R., et al. (2002) Gene islands integrated into tRNA (Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone. J Bacteriol 184: 66656680.
  • Liu, T., Renberg, S.K., and Haggard-Ljungquist, E. (1997) Derepression of prophage P2 by satellite phage P4: cloning of the P4 epsilon gene and identification of its product. J Virol 71: 45024508.
  • Marra, D., and Scott, J.R. (1999) Regulation of excision of the conjugative transposon Tn916. Mol Microbiol 31: 609621.
  • Van Der Meer, J.R., Ravatn, R., and Sentchilo, V. (2001) The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases. Arch Microbiol 175: 7985.
  • Miller, W.G., and Lindow, S.E. (1997) An improved GFP cloning cassette designed for prokaryotic transcriptional fusions. Gene 191: 149153.
  • Mokross, H., Schmidt, E., and Reineke, W. (1990) Degradation of 3-chlorobiphenyl by in vivo constructed hybrid pseudomonads. FEMS Microbiol Lett 59: 179185.
  • Pansegrau, W., Lanka, E., Barth, P.T., Figurski, D.H., Guiney, D.G., Haas, D., et al. (1994) Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysis. J Mol Biol 239: 623663.
  • Pierson, L.S., and Kahn, M.L. (1987) Integration of satellite bacteriophage P4 in Escherichia coli. DNA sequences of the phage and host regions involved in site-specific recombination. J Mol Biol 196: 487496.
  • Rakin, A., Noelting, C., Schropp, P., and Heesemann, J. (2001) Integrative module of the high-pathogenicity island of Yersinia. Mol Microbiol 39: 407415.
  • Ravatn, R., Zehnder, A.J.B., and Van Der Meer, J.R. (1998a) Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl Environ Microbiol 64: 21262132.
  • Ravatn, R., Studer, S., Springael, D., Zehnder, A.J.B., and Van Der Meer, J.R. (1998b) Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J Bacteriol 180: 43604369.
  • Ravatn, R., Studer, S., Zehnder, A.J.B., and Van Der Meer, J.R. (1998c) Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13. J Bacteriol 180: 55055514.
  • Raynal, A., Tuphile, K., Gerbaud, C., Luther, T., Guérineau, M., and Pernodet, J.L. (1998) Structure of the chromosomal insertion site for pSAM2: functional analysis in Escherichia coli. Mol Microbiol 28: 333342.
  • Saha, S., Haggard-Ljungquist, E., and Nordstrom, K. (1987a) The Cox protein of bacteriophage P2 inhibits the formation of the repressor protein and autoregulates the early operon. EMBO J 6: 31913199.
  • Saha, S., Lundqvist, B., and Haggard-Ljungquist, E. (1987b) Autoregulation of bacteriophage P2 repressor. EMBO J 6: 809814.
  • Sezonov, G., Duchene, A.M., Friedmann, A., Guérineau, M., and Pernodet, J.L. (1998) Replicase, excisionase, and integrase genes of the Streptomyces element pSAM2 constitute an operon positively regulated by the pra gene. J Bacteriol 180: 30563061.
  • Sezonov, G., Possoz, C., Friedmann, A., Pernodet, J.L., and Guérineau, M. (2000) KorSA from the Streptomyces integrative element pSAM2 is a central transcriptional repressor: target genes and binding sites. J Bacteriol 182: 12431250.
  • Shearwin, K.E., and Egan, J.B. (2000) Establishment of lysogeny in bacteriophage 186. DNA binding and transcriptional activation by the CII protein. J Biol Chem 275: 2911329122.
  • Shoemaker, N.B., Wang, G.R., and Salyers, A.A. (1996) The Bacteroides mobilizable insertion element, NBU1, integrates into the 3′ end of a Leu-tRNA gene and has an integrase that is a member of the lambda integrase family. J Bacteriol 178: 35943600.
  • Simon, R., Priefer, U., and Puhler, A. (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram-negative bacteria. Bio/Technology 1: 784791.
  • Simpson, A.J., Reinach, F.C., Arruda, P., Abreu, F.A., Acencio, M., Alvarenga, R., et al. (2000) The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa consortium of the organization for nucleotide sequencing and analysis. Nature 406: 151115.
  • Springael, D., Peys, K., Ryngaert, A., Van Roy, S., Hooyberghs, L., Ravatn, R., et al. (2002) Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria. Environ Microbiol 4: 7080.
  • Watanabe, H., Arakawa, E., Ito, K., Kato, J., and Nakamura, A. (1990) Genetic analysis of an invasion region by use of a Tn3-lac transposon and identification of a second positive regulator gene, invE, for cell invasion of Shigella sonnei: significant homology of invE with ParB of plasmid P1. J Bacteriol 172: 619629.
  • Wosten, M.M. (1998) Eubacterial sigma-factors. FEMS Microbiol Rev 22: 127150.
  • Yu, A., and Haggard-Ljungquist, E. (1993) The Cox protein is a modulator of directionality in bacteriophage P2 site-specific recombination. J Bacteriol 175: 78487855.
  • Zatyka, M., Jagura-Burdzy, G., and Thomas, C.M. (1997) Transcriptional and translational control of the genes for the mating pair formation apparatus of promiscuous IncP plasmids. J Bacteriol 179: 72017209.
  • Zhou, J.Z., and Tiedje, J.M. (1995) Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium. Mol Ecol 4: 613618.